data_3RDS # _model_server_result.job_id TGFGg63U3Osm0XaEJ79eEw _model_server_result.datetime_utc '2024-11-18 08:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3RDS # _exptl.entry_id 3RDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDS _cell.length_a 57.469 _cell.length_b 57.469 _cell.length_c 173.492 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -57.469 -57.469 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -57.469 -57.469 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3RDS _atom_sites.fract_transf_matrix[1][1] 0.017401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 700 700 1PE 1PE . C 3 HOH A 1 141 141 HOH HOH . C 3 HOH A 2 142 142 HOH HOH . C 3 HOH A 3 143 143 HOH HOH . C 3 HOH A 4 144 144 HOH HOH . C 3 HOH A 5 145 145 HOH HOH . C 3 HOH A 6 146 146 HOH HOH . C 3 HOH A 7 147 147 HOH HOH . C 3 HOH A 8 148 148 HOH HOH . C 3 HOH A 9 149 149 HOH HOH . C 3 HOH A 10 150 150 HOH HOH . C 3 HOH A 11 151 151 HOH HOH . C 3 HOH A 12 152 152 HOH HOH . C 3 HOH A 13 153 153 HOH HOH . C 3 HOH A 14 154 154 HOH HOH . C 3 HOH A 15 155 155 HOH HOH . C 3 HOH A 16 156 156 HOH HOH . C 3 HOH A 17 157 157 HOH HOH . C 3 HOH A 18 158 158 HOH HOH . C 3 HOH A 19 159 159 HOH HOH . C 3 HOH A 20 160 160 HOH HOH . C 3 HOH A 21 161 161 HOH HOH . C 3 HOH A 22 162 162 HOH HOH . C 3 HOH A 23 163 163 HOH HOH . C 3 HOH A 24 164 164 HOH HOH . C 3 HOH A 25 165 165 HOH HOH . C 3 HOH A 26 166 166 HOH HOH . C 3 HOH A 27 167 167 HOH HOH . C 3 HOH A 28 168 168 HOH HOH . C 3 HOH A 29 169 169 HOH HOH . C 3 HOH A 30 170 170 HOH HOH . C 3 HOH A 31 171 171 HOH HOH . C 3 HOH A 32 172 172 HOH HOH . C 3 HOH A 33 173 173 HOH HOH . C 3 HOH A 34 174 174 HOH HOH . C 3 HOH A 35 175 175 HOH HOH . C 3 HOH A 36 176 176 HOH HOH . C 3 HOH A 37 177 177 HOH HOH . C 3 HOH A 38 178 178 HOH HOH . C 3 HOH A 39 179 179 HOH HOH . C 3 HOH A 40 180 180 HOH HOH . C 3 HOH A 41 181 181 HOH HOH . C 3 HOH A 42 182 182 HOH HOH . C 3 HOH A 43 183 183 HOH HOH . C 3 HOH A 44 184 184 HOH HOH . C 3 HOH A 45 185 185 HOH HOH . C 3 HOH A 46 186 186 HOH HOH . C 3 HOH A 47 187 187 HOH HOH . C 3 HOH A 48 188 188 HOH HOH . C 3 HOH A 49 189 189 HOH HOH . C 3 HOH A 50 190 190 HOH HOH . C 3 HOH A 51 191 191 HOH HOH . C 3 HOH A 52 192 192 HOH HOH . C 3 HOH A 53 193 193 HOH HOH . C 3 HOH A 54 194 194 HOH HOH . C 3 HOH A 55 195 195 HOH HOH . C 3 HOH A 56 196 196 HOH HOH . C 3 HOH A 57 197 197 HOH HOH . C 3 HOH A 58 198 198 HOH HOH . C 3 HOH A 59 199 199 HOH HOH . C 3 HOH A 60 200 200 HOH HOH . C 3 HOH A 61 201 201 HOH HOH . C 3 HOH A 62 202 202 HOH HOH . C 3 HOH A 63 203 203 HOH HOH . C 3 HOH A 64 204 204 HOH HOH . C 3 HOH A 65 205 205 HOH HOH . C 3 HOH A 66 206 206 HOH HOH . C 3 HOH A 67 207 207 HOH HOH . C 3 HOH A 68 208 208 HOH HOH . C 3 HOH A 69 209 209 HOH HOH . C 3 HOH A 70 210 210 HOH HOH . C 3 HOH A 71 211 211 HOH HOH . C 3 HOH A 72 212 212 HOH HOH . C 3 HOH A 73 213 213 HOH HOH . C 3 HOH A 74 214 214 HOH HOH . C 3 HOH A 75 215 215 HOH HOH . C 3 HOH A 76 216 216 HOH HOH . C 3 HOH A 77 217 217 HOH HOH . C 3 HOH A 78 218 218 HOH HOH . C 3 HOH A 79 219 219 HOH HOH . C 3 HOH A 80 220 220 HOH HOH . C 3 HOH A 81 221 221 HOH HOH . C 3 HOH A 82 222 222 HOH HOH . C 3 HOH A 83 223 223 HOH HOH . C 3 HOH A 84 224 224 HOH HOH . C 3 HOH A 85 225 225 HOH HOH . C 3 HOH A 86 226 226 HOH HOH . C 3 HOH A 87 227 227 HOH HOH . C 3 HOH A 88 228 228 HOH HOH . C 3 HOH A 89 229 229 HOH HOH . C 3 HOH A 90 230 230 HOH HOH . C 3 HOH A 91 231 231 HOH HOH . C 3 HOH A 92 232 232 HOH HOH . C 3 HOH A 93 233 233 HOH HOH . C 3 HOH A 94 234 234 HOH HOH . C 3 HOH A 95 235 235 HOH HOH . C 3 HOH A 96 236 236 HOH HOH . C 3 HOH A 97 237 237 HOH HOH . C 3 HOH A 98 238 238 HOH HOH . C 3 HOH A 99 239 239 HOH HOH . C 3 HOH A 100 240 240 HOH HOH . C 3 HOH A 101 241 241 HOH HOH . C 3 HOH A 102 242 242 HOH HOH . C 3 HOH A 103 243 243 HOH HOH . C 3 HOH A 104 244 244 HOH HOH . C 3 HOH A 105 245 245 HOH HOH . C 3 HOH A 106 246 246 HOH HOH . C 3 HOH A 107 247 247 HOH HOH . C 3 HOH A 108 248 248 HOH HOH . C 3 HOH A 109 249 249 HOH HOH . C 3 HOH A 110 250 250 HOH HOH . C 3 HOH A 111 251 251 HOH HOH . C 3 HOH A 112 252 252 HOH HOH . C 3 HOH A 113 253 253 HOH HOH . C 3 HOH A 114 254 254 HOH HOH . C 3 HOH A 115 255 255 HOH HOH . C 3 HOH A 116 256 256 HOH HOH . C 3 HOH A 117 257 257 HOH HOH . C 3 HOH A 118 258 258 HOH HOH . C 3 HOH A 119 259 259 HOH HOH . C 3 HOH A 120 260 260 HOH HOH . C 3 HOH A 121 261 261 HOH HOH . C 3 HOH A 122 262 262 HOH HOH . C 3 HOH A 123 263 263 HOH HOH . C 3 HOH A 124 264 264 HOH HOH . C 3 HOH A 125 265 265 HOH HOH . C 3 HOH A 126 266 266 HOH HOH . C 3 HOH A 127 267 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -18.067 -29.603 -7.447 1 37.03 ? OH2 1PE 700 A 1 HETATM 2 C C12 1PE . . . B 2 -18.419 -28.309 -7.927 1 36.85 ? C12 1PE 700 A 1 HETATM 3 C C22 1PE . . . B 2 -17.51 -28.051 -9.105 1 35.78 ? C22 1PE 700 A 1 HETATM 4 O OH3 1PE . . . B 2 -18.184 -27.173 -9.979 1 37.89 ? OH3 1PE 700 A 1 HETATM 5 C C13 1PE . . . B 2 -18.005 -25.846 -11.979 1 38 ? C13 1PE 700 A 1 HETATM 6 C C23 1PE . . . B 2 -17.395 -26.979 -11.161 1 36.62 ? C23 1PE 700 A 1 HETATM 7 O OH4 1PE . . . B 2 -17.387 -25.816 -13.269 1 38.37 ? OH4 1PE 700 A 1 HETATM 8 C C14 1PE . . . B 2 -19.359 -25.163 -14.421 1 38.77 ? C14 1PE 700 A 1 HETATM 9 C C24 1PE . . . B 2 -17.942 -24.77 -14.053 1 39.38 ? C24 1PE 700 A 1 HETATM 10 O OH5 1PE . . . B 2 -20.27 -24.851 -13.372 1 40.26 ? OH5 1PE 700 A 1 HETATM 11 C C15 1PE . . . B 2 -22.435 -25.868 -13.641 1 41.11 ? C15 1PE 700 A 1 HETATM 12 C C25 1PE . . . B 2 -21.577 -24.645 -13.9 1 40.36 ? C25 1PE 700 A 1 HETATM 13 O OH6 1PE . . . B 2 -23.415 -25.954 -14.664 1 41.72 ? OH6 1PE 700 A 1 HETATM 14 C C16 1PE . . . B 2 -24.921 -27.627 -15.422 1 41.67 ? C16 1PE 700 A 1 HETATM 15 C C26 1PE . . . B 2 -23.458 -27.25 -15.258 1 42.7 ? C26 1PE 700 A 1 HETATM 16 O OH7 1PE . . . B 2 -25.64 -26.444 -15.789 1 44.27 ? OH7 1PE 700 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #