data_3RDX # _model_server_result.job_id CzpHiRl8f9_5C5m1U4Gl4w _model_server_result.datetime_utc '2024-11-18 09:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3RDX # _exptl.entry_id 3RDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RDX _cell.length_a 79.25 _cell.length_b 81.64 _cell.length_c 84.537 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3RDX _atom_sites.fract_transf_matrix[1][1] 0.012618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 300 300 GOL GOL . D 3 HOH A 1 141 5 HOH HOH . D 3 HOH A 2 142 6 HOH HOH . D 3 HOH A 3 143 9 HOH HOH . D 3 HOH A 4 144 10 HOH HOH . D 3 HOH A 5 145 14 HOH HOH . D 3 HOH A 6 146 16 HOH HOH . D 3 HOH A 7 147 19 HOH HOH . D 3 HOH A 8 148 20 HOH HOH . D 3 HOH A 9 149 22 HOH HOH . D 3 HOH A 10 150 24 HOH HOH . D 3 HOH A 11 151 25 HOH HOH . D 3 HOH A 12 152 29 HOH HOH . D 3 HOH A 13 153 30 HOH HOH . D 3 HOH A 14 154 33 HOH HOH . D 3 HOH A 15 155 36 HOH HOH . D 3 HOH A 16 156 38 HOH HOH . D 3 HOH A 17 157 42 HOH HOH . D 3 HOH A 18 158 43 HOH HOH . D 3 HOH A 19 159 48 HOH HOH . D 3 HOH A 20 160 49 HOH HOH . D 3 HOH A 21 161 50 HOH HOH . D 3 HOH A 22 162 51 HOH HOH . D 3 HOH A 23 163 52 HOH HOH . D 3 HOH A 24 164 53 HOH HOH . D 3 HOH A 25 165 54 HOH HOH . D 3 HOH A 26 166 55 HOH HOH . D 3 HOH A 27 167 56 HOH HOH . D 3 HOH A 28 168 57 HOH HOH . D 3 HOH A 29 169 58 HOH HOH . D 3 HOH A 30 170 59 HOH HOH . D 3 HOH A 31 171 60 HOH HOH . D 3 HOH A 32 172 63 HOH HOH . D 3 HOH A 33 173 65 HOH HOH . D 3 HOH A 34 174 69 HOH HOH . D 3 HOH A 35 175 70 HOH HOH . D 3 HOH A 36 176 71 HOH HOH . D 3 HOH A 37 177 72 HOH HOH . D 3 HOH A 38 178 74 HOH HOH . D 3 HOH A 39 179 75 HOH HOH . D 3 HOH A 40 180 76 HOH HOH . D 3 HOH A 41 181 77 HOH HOH . D 3 HOH A 42 182 79 HOH HOH . D 3 HOH A 43 183 81 HOH HOH . D 3 HOH A 44 184 84 HOH HOH . D 3 HOH A 45 185 86 HOH HOH . D 3 HOH A 46 186 87 HOH HOH . D 3 HOH A 47 187 88 HOH HOH . D 3 HOH A 48 188 91 HOH HOH . D 3 HOH A 49 189 96 HOH HOH . D 3 HOH A 50 190 106 HOH HOH . D 3 HOH A 51 191 108 HOH HOH . D 3 HOH A 52 192 109 HOH HOH . D 3 HOH A 53 193 110 HOH HOH . D 3 HOH A 54 194 112 HOH HOH . D 3 HOH A 55 195 115 HOH HOH . D 3 HOH A 56 196 116 HOH HOH . E 3 HOH B 1 141 1 HOH HOH . E 3 HOH B 2 142 3 HOH HOH . E 3 HOH B 3 143 4 HOH HOH . E 3 HOH B 4 144 7 HOH HOH . E 3 HOH B 5 145 8 HOH HOH . E 3 HOH B 6 146 11 HOH HOH . E 3 HOH B 7 147 12 HOH HOH . E 3 HOH B 8 148 13 HOH HOH . E 3 HOH B 9 149 15 HOH HOH . E 3 HOH B 10 150 17 HOH HOH . E 3 HOH B 11 151 18 HOH HOH . E 3 HOH B 12 152 21 HOH HOH . E 3 HOH B 13 153 23 HOH HOH . E 3 HOH B 14 154 26 HOH HOH . E 3 HOH B 15 155 27 HOH HOH . E 3 HOH B 16 156 31 HOH HOH . E 3 HOH B 17 157 32 HOH HOH . E 3 HOH B 18 158 34 HOH HOH . E 3 HOH B 19 159 35 HOH HOH . E 3 HOH B 20 160 37 HOH HOH . E 3 HOH B 21 161 39 HOH HOH . E 3 HOH B 22 162 40 HOH HOH . E 3 HOH B 23 163 44 HOH HOH . E 3 HOH B 24 164 45 HOH HOH . E 3 HOH B 25 165 46 HOH HOH . E 3 HOH B 26 166 47 HOH HOH . E 3 HOH B 27 167 61 HOH HOH . E 3 HOH B 28 168 62 HOH HOH . E 3 HOH B 29 169 64 HOH HOH . E 3 HOH B 30 170 66 HOH HOH . E 3 HOH B 31 171 67 HOH HOH . E 3 HOH B 32 172 68 HOH HOH . E 3 HOH B 33 173 78 HOH HOH . E 3 HOH B 34 174 80 HOH HOH . E 3 HOH B 35 175 82 HOH HOH . E 3 HOH B 36 176 83 HOH HOH . E 3 HOH B 37 177 89 HOH HOH . E 3 HOH B 38 178 90 HOH HOH . E 3 HOH B 39 179 92 HOH HOH . E 3 HOH B 40 180 93 HOH HOH . E 3 HOH B 41 181 94 HOH HOH . E 3 HOH B 42 182 95 HOH HOH . E 3 HOH B 43 183 97 HOH HOH . E 3 HOH B 44 184 98 HOH HOH . E 3 HOH B 45 185 99 HOH HOH . E 3 HOH B 46 186 100 HOH HOH . E 3 HOH B 47 187 101 HOH HOH . E 3 HOH B 48 188 102 HOH HOH . E 3 HOH B 49 189 103 HOH HOH . E 3 HOH B 50 190 105 HOH HOH . E 3 HOH B 51 191 107 HOH HOH . E 3 HOH B 52 192 113 HOH HOH . E 3 HOH B 53 193 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 44.094 -7.743 -9.111 1 31.84 ? C1 GOL 300 B 1 HETATM 2 O O1 GOL . . . C 2 43.735 -6.383 -8.928 1 32.75 ? O1 GOL 300 B 1 HETATM 3 C C2 GOL . . . C 2 43.701 -8.503 -7.837 1 31.62 ? C2 GOL 300 B 1 HETATM 4 O O2 GOL . . . C 2 42.277 -8.563 -7.744 1 33.04 ? O2 GOL 300 B 1 HETATM 5 C C3 GOL . . . C 2 44.326 -9.901 -7.735 1 31.61 ? C3 GOL 300 B 1 HETATM 6 O O3 GOL . . . C 2 45.581 -10.063 -8.401 1 32.13 ? O3 GOL 300 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #