data_3RE3
#
_model_server_result.job_id            ZRSxmE1sAQPRfYjx4ppznQ 
_model_server_result.datetime_utc      '2024-10-19 04:32:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3re3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":160}' 
#
_entry.id    3RE3 
#
_exptl.entry_id    3RE3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RE3 
_cell.length_a            96.116 
_cell.length_b            96.116 
_cell.length_c            155.308 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RE3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA dodecameric 12 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,Q 1 1,2,3 
B,C,D,I,J,K,L,M,N,O,P,R,S,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 96.116 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.058 83.238898 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C LYS 88 A LYS 85 1_555 A N MSE 89 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 89 A MSE 86 1_555 A N LEU 90 A LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C LYS 110 A LYS 107 1_555 A N MSE 111 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 111 A MSE 108 1_555 A N LEU 112 A LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C LYS 117 A LYS 114 1_555 A N MSE 118 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C MSE 118 A MSE 115 1_555 A N ARG 119 A ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B C MSE 4 B MSE 1 1_555 B N SER 5 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 B C LYS 88 B LYS 85 1_555 B N MSE 89 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C MSE 89 B MSE 86 1_555 B N LEU 90 B LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale12 B C LYS 110 B LYS 107 1_555 B N MSE 111 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale13 B C MSE 111 B MSE 108 1_555 B N LEU 112 B LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 B C LYS 117 B LYS 114 1_555 B N MSE 118 B MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale15 B C MSE 118 B MSE 115 1_555 B N ARG 119 B ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale16 C C MSE 4 C MSE 1 1_555 C N SER 5 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale17 C C LYS 88 C LYS 85 1_555 C N MSE 89 C MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 C C MSE 89 C MSE 86 1_555 C N LEU 90 C LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale19 C C LYS 110 C LYS 107 1_555 C N MSE 111 C MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale20 C C MSE 111 C MSE 108 1_555 C N LEU 112 C LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale21 C C LYS 117 C LYS 114 1_555 C N MSE 118 C MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale22 C C MSE 118 C MSE 115 1_555 C N ARG 119 C ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale23 D C ALA 3 D ALA 0 1_555 D N MSE 4 D MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 D C MSE 4 D MSE 1 1_555 D N SER 5 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale25 D C LYS 88 D LYS 85 1_555 D N MSE 89 D MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale26 D C MSE 89 D MSE 86 1_555 D N LEU 90 D LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale27 D C LYS 110 D LYS 107 1_555 D N MSE 111 D MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale28 D C MSE 111 D MSE 108 1_555 D N LEU 112 D LEU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale29 D C LYS 117 D LYS 114 1_555 D N MSE 118 D MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale30 D C MSE 118 D MSE 115 1_555 D N ARG 119 D ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
metalc ? metalc1 A O GLY 56 A GLY 53 1_555 F NA NA . A NA 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? 
metalc ? metalc2 D O GLY 56 D GLY 53 1_555 J NA NA . B NA 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? 
metalc ? metalc3 B O ILE 100 B ILE 97 1_555 J NA NA . B NA 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? 
metalc ? metalc4 C O GLY 56 C GLY 53 1_555 M NA NA . C NA 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? 
metalc ? metalc5 D O ILE 100 D ILE 97 1_555 M NA NA . C NA 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RE3 
_atom_sites.fract_transf_matrix[1][1]    0.010404 
_atom_sites.fract_transf_matrix[1][2]    0.006007 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POP A 1 163 163 POP POP . 
F 3 NA A 1 165 165 NA NA . 
G 4 CL A 1 160 1 CL CL . 
H 5 PO4 A 1 161 1 PO4 PO4 . 
I 2 POP B 1 161 161 POP POP . 
J 3 NA B 1 160 161 NA NA . 
K 5 PO4 C 1 162 162 PO4 PO4 . 
L 6 MPD C 1 163 163 MPD MPD . 
M 3 NA C 1 161 161 NA NA . 
N 6 MPD C 1 160 163 MPD MPD . 
O 5 PO4 D 1 162 162 PO4 PO4 . 
P 4 CL D 1 160 162 CL CL . 
Q 7 HOH A 1 162 1 HOH HOH . 
Q 7 HOH A 2 164 3 HOH HOH . 
Q 7 HOH A 3 166 4 HOH HOH . 
Q 7 HOH A 4 167 6 HOH HOH . 
Q 7 HOH A 5 168 7 HOH HOH . 
Q 7 HOH A 6 169 10 HOH HOH . 
Q 7 HOH A 7 170 11 HOH HOH . 
Q 7 HOH A 8 171 13 HOH HOH . 
Q 7 HOH A 9 172 14 HOH HOH . 
Q 7 HOH A 10 173 15 HOH HOH . 
Q 7 HOH A 11 174 16 HOH HOH . 
Q 7 HOH A 12 175 17 HOH HOH . 
Q 7 HOH A 13 176 26 HOH HOH . 
Q 7 HOH A 14 177 35 HOH HOH . 
Q 7 HOH A 15 178 36 HOH HOH . 
Q 7 HOH A 16 179 41 HOH HOH . 
Q 7 HOH A 17 180 47 HOH HOH . 
Q 7 HOH A 18 181 48 HOH HOH . 
Q 7 HOH A 19 182 49 HOH HOH . 
Q 7 HOH A 20 183 51 HOH HOH . 
Q 7 HOH A 21 184 52 HOH HOH . 
Q 7 HOH A 22 185 55 HOH HOH . 
Q 7 HOH A 23 186 59 HOH HOH . 
Q 7 HOH A 24 187 60 HOH HOH . 
Q 7 HOH A 25 188 62 HOH HOH . 
Q 7 HOH A 26 189 63 HOH HOH . 
R 7 HOH B 1 162 2 HOH HOH . 
R 7 HOH B 2 163 5 HOH HOH . 
R 7 HOH B 3 164 9 HOH HOH . 
R 7 HOH B 4 165 18 HOH HOH . 
R 7 HOH B 5 166 19 HOH HOH . 
R 7 HOH B 6 167 20 HOH HOH . 
R 7 HOH B 7 168 21 HOH HOH . 
R 7 HOH B 8 169 37 HOH HOH . 
R 7 HOH B 9 170 38 HOH HOH . 
R 7 HOH B 10 171 45 HOH HOH . 
R 7 HOH B 11 172 50 HOH HOH . 
R 7 HOH B 12 173 53 HOH HOH . 
R 7 HOH B 13 174 57 HOH HOH . 
R 7 HOH B 14 175 29 HOH HOH . 
S 7 HOH C 1 164 12 HOH HOH . 
S 7 HOH C 2 165 23 HOH HOH . 
S 7 HOH C 3 166 25 HOH HOH . 
S 7 HOH C 4 167 27 HOH HOH . 
S 7 HOH C 5 168 28 HOH HOH . 
S 7 HOH C 6 169 39 HOH HOH . 
S 7 HOH C 7 170 40 HOH HOH . 
S 7 HOH C 8 171 46 HOH HOH . 
S 7 HOH C 9 172 54 HOH HOH . 
S 7 HOH C 10 173 61 HOH HOH . 
T 7 HOH D 1 161 8 HOH HOH . 
T 7 HOH D 2 163 22 HOH HOH . 
T 7 HOH D 3 164 24 HOH HOH . 
T 7 HOH D 4 166 30 HOH HOH . 
T 7 HOH D 5 167 31 HOH HOH . 
T 7 HOH D 6 168 32 HOH HOH . 
T 7 HOH D 7 169 33 HOH HOH . 
T 7 HOH D 8 170 34 HOH HOH . 
T 7 HOH D 9 171 42 HOH HOH . 
T 7 HOH D 10 172 43 HOH HOH . 
T 7 HOH D 11 173 44 HOH HOH . 
T 7 HOH D 12 174 56 HOH HOH . 
T 7 HOH D 13 175 58 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               34.598 
_atom_site.Cartn_y               -5.381 
_atom_site.Cartn_z               105.519 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        68.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           160 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#