data_3RE5 # _model_server_result.job_id njrCNSM7KX2l7AdoD6df2A _model_server_result.datetime_utc '2024-11-18 09:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3re5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3RE5 # _exptl.entry_id 3RE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RE5 _cell.length_a 57.471 _cell.length_b 57.471 _cell.length_c 173.612 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -57.471 -57.471 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -57.471 -57.471 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 3RE5 _atom_sites.fract_transf_matrix[1][1] 0.0174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 700 700 1PE 1PE . C 3 GOL A 1 300 300 GOL GOL . D 4 HOH A 1 141 141 HOH HOH . D 4 HOH A 2 142 142 HOH HOH . D 4 HOH A 3 143 143 HOH HOH . D 4 HOH A 4 144 144 HOH HOH . D 4 HOH A 5 145 145 HOH HOH . D 4 HOH A 6 146 146 HOH HOH . D 4 HOH A 7 147 147 HOH HOH . D 4 HOH A 8 148 148 HOH HOH . D 4 HOH A 9 149 149 HOH HOH . D 4 HOH A 10 150 150 HOH HOH . D 4 HOH A 11 151 151 HOH HOH . D 4 HOH A 12 152 152 HOH HOH . D 4 HOH A 13 153 153 HOH HOH . D 4 HOH A 14 154 154 HOH HOH . D 4 HOH A 15 155 155 HOH HOH . D 4 HOH A 16 156 156 HOH HOH . D 4 HOH A 17 157 157 HOH HOH . D 4 HOH A 18 158 158 HOH HOH . D 4 HOH A 19 159 159 HOH HOH . D 4 HOH A 20 160 160 HOH HOH . D 4 HOH A 21 161 161 HOH HOH . D 4 HOH A 22 162 162 HOH HOH . D 4 HOH A 23 163 163 HOH HOH . D 4 HOH A 24 164 164 HOH HOH . D 4 HOH A 25 165 165 HOH HOH . D 4 HOH A 26 166 166 HOH HOH . D 4 HOH A 27 167 167 HOH HOH . D 4 HOH A 28 168 168 HOH HOH . D 4 HOH A 29 169 169 HOH HOH . D 4 HOH A 30 170 170 HOH HOH . D 4 HOH A 31 171 171 HOH HOH . D 4 HOH A 32 172 172 HOH HOH . D 4 HOH A 33 173 173 HOH HOH . D 4 HOH A 34 174 174 HOH HOH . D 4 HOH A 35 175 175 HOH HOH . D 4 HOH A 36 176 176 HOH HOH . D 4 HOH A 37 177 177 HOH HOH . D 4 HOH A 38 178 178 HOH HOH . D 4 HOH A 39 179 179 HOH HOH . D 4 HOH A 40 180 180 HOH HOH . D 4 HOH A 41 181 181 HOH HOH . D 4 HOH A 42 182 182 HOH HOH . D 4 HOH A 43 183 183 HOH HOH . D 4 HOH A 44 184 184 HOH HOH . D 4 HOH A 45 185 185 HOH HOH . D 4 HOH A 46 186 186 HOH HOH . D 4 HOH A 47 187 187 HOH HOH . D 4 HOH A 48 188 188 HOH HOH . D 4 HOH A 49 189 189 HOH HOH . D 4 HOH A 50 190 190 HOH HOH . D 4 HOH A 51 191 191 HOH HOH . D 4 HOH A 52 192 192 HOH HOH . D 4 HOH A 53 193 193 HOH HOH . D 4 HOH A 54 194 194 HOH HOH . D 4 HOH A 55 195 195 HOH HOH . D 4 HOH A 56 196 196 HOH HOH . D 4 HOH A 57 197 197 HOH HOH . D 4 HOH A 58 198 198 HOH HOH . D 4 HOH A 59 199 199 HOH HOH . D 4 HOH A 60 200 200 HOH HOH . D 4 HOH A 61 201 201 HOH HOH . D 4 HOH A 62 202 202 HOH HOH . D 4 HOH A 63 203 203 HOH HOH . D 4 HOH A 64 204 204 HOH HOH . D 4 HOH A 65 205 205 HOH HOH . D 4 HOH A 66 206 206 HOH HOH . D 4 HOH A 67 207 207 HOH HOH . D 4 HOH A 68 208 208 HOH HOH . D 4 HOH A 69 209 209 HOH HOH . D 4 HOH A 70 210 210 HOH HOH . D 4 HOH A 71 211 211 HOH HOH . D 4 HOH A 72 212 212 HOH HOH . D 4 HOH A 73 213 213 HOH HOH . D 4 HOH A 74 214 214 HOH HOH . D 4 HOH A 75 215 215 HOH HOH . D 4 HOH A 76 216 216 HOH HOH . D 4 HOH A 77 217 217 HOH HOH . D 4 HOH A 78 218 218 HOH HOH . D 4 HOH A 79 219 219 HOH HOH . D 4 HOH A 80 220 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -3.58 -25.591 -17.775 0.5 73.06 ? C1 GOL 300 A 1 HETATM 2 O O1 GOL . . . C 3 -4.796 -25.586 -18.489 0.5 69.89 ? O1 GOL 300 A 1 HETATM 3 C C2 GOL . . . C 3 -3.69 -24.647 -16.583 0.5 69.02 ? C2 GOL 300 A 1 HETATM 4 O O2 GOL . . . C 3 -3.097 -25.263 -15.46 0.5 71.63 ? O2 GOL 300 A 1 HETATM 5 C C3 GOL . . . C 3 -2.956 -23.348 -16.907 0.5 72.6 ? C3 GOL 300 A 1 HETATM 6 O O3 GOL . . . C 3 -3.67 -22.234 -16.413 0.5 68.74 ? O3 GOL 300 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #