data_3REF # _model_server_result.job_id 6LpJICppOIZqXf6zsiCRlQ _model_server_result.datetime_utc '2024-11-15 10:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ref # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":550}' # _entry.id 3REF # _exptl.entry_id 3REF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3REF _cell.length_a 50.3 _cell.length_b 54.476 _cell.length_c 132.285 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3REF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,I,K 1 1 A,C,D,E,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 37 B THR 34 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A O THR 55 B THR 52 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 J O HOH . B HOH 220 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 J O HOH . B HOH 221 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 J O HOH . B HOH 222 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 C O3B GDP . B GDP 274 1_555 D MG MG . B MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 B OG1 THR 37 A THR 34 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 B O THR 55 A THR 52 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc9 G MG MG . A MG 192 1_555 K O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc10 G MG MG . A MG 192 1_555 K O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 G MG MG . A MG 192 1_555 K O HOH . A HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc12 G MG MG . A MG 192 1_555 F O3B GDP . A GDP 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3REF _atom_sites.fract_transf_matrix[1][1] 0.019881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP B 1 274 274 GDP GDP . D 3 MG B 1 550 550 MG MG . E 4 SO4 B 1 192 190 SO4 SO4 . F 2 GDP A 1 274 274 GDP GDP . G 3 MG A 1 192 192 MG MG . H 4 SO4 A 1 193 193 SO4 SO4 . I 4 SO4 A 1 194 194 SO4 SO4 . J 5 HOH B 1 193 1 HOH HOH . J 5 HOH B 2 194 194 HOH HOH . J 5 HOH B 3 195 195 HOH HOH . J 5 HOH B 4 196 196 HOH HOH . J 5 HOH B 5 197 197 HOH HOH . J 5 HOH B 6 198 2 HOH HOH . J 5 HOH B 7 199 3 HOH HOH . J 5 HOH B 8 200 4 HOH HOH . J 5 HOH B 9 201 201 HOH HOH . J 5 HOH B 10 202 5 HOH HOH . J 5 HOH B 11 203 6 HOH HOH . J 5 HOH B 12 204 204 HOH HOH . J 5 HOH B 13 205 7 HOH HOH . J 5 HOH B 14 206 8 HOH HOH . J 5 HOH B 15 207 207 HOH HOH . J 5 HOH B 16 208 9 HOH HOH . J 5 HOH B 17 209 10 HOH HOH . J 5 HOH B 18 210 210 HOH HOH . J 5 HOH B 19 211 211 HOH HOH . J 5 HOH B 20 212 212 HOH HOH . J 5 HOH B 21 213 213 HOH HOH . J 5 HOH B 22 214 11 HOH HOH . J 5 HOH B 23 215 12 HOH HOH . J 5 HOH B 24 216 13 HOH HOH . J 5 HOH B 25 217 14 HOH HOH . J 5 HOH B 26 218 15 HOH HOH . J 5 HOH B 27 219 16 HOH HOH . J 5 HOH B 28 220 17 HOH HOH . J 5 HOH B 29 221 18 HOH HOH . J 5 HOH B 30 222 19 HOH HOH . J 5 HOH B 31 223 20 HOH HOH . J 5 HOH B 32 224 21 HOH HOH . J 5 HOH B 33 225 22 HOH HOH . J 5 HOH B 34 226 23 HOH HOH . J 5 HOH B 35 227 24 HOH HOH . J 5 HOH B 36 228 25 HOH HOH . J 5 HOH B 37 229 26 HOH HOH . J 5 HOH B 38 230 27 HOH HOH . J 5 HOH B 39 231 28 HOH HOH . J 5 HOH B 40 232 29 HOH HOH . J 5 HOH B 41 233 30 HOH HOH . J 5 HOH B 42 234 31 HOH HOH . J 5 HOH B 43 235 32 HOH HOH . J 5 HOH B 44 236 33 HOH HOH . J 5 HOH B 45 237 34 HOH HOH . J 5 HOH B 46 238 35 HOH HOH . J 5 HOH B 47 239 36 HOH HOH . J 5 HOH B 48 240 37 HOH HOH . J 5 HOH B 49 241 38 HOH HOH . J 5 HOH B 50 242 39 HOH HOH . J 5 HOH B 51 243 40 HOH HOH . J 5 HOH B 52 244 41 HOH HOH . J 5 HOH B 53 245 42 HOH HOH . J 5 HOH B 54 246 43 HOH HOH . J 5 HOH B 55 247 44 HOH HOH . J 5 HOH B 56 248 45 HOH HOH . J 5 HOH B 57 249 46 HOH HOH . J 5 HOH B 58 250 47 HOH HOH . J 5 HOH B 59 251 48 HOH HOH . J 5 HOH B 60 252 49 HOH HOH . J 5 HOH B 61 253 50 HOH HOH . J 5 HOH B 62 254 51 HOH HOH . J 5 HOH B 63 255 52 HOH HOH . J 5 HOH B 64 256 53 HOH HOH . J 5 HOH B 65 257 54 HOH HOH . J 5 HOH B 66 258 55 HOH HOH . J 5 HOH B 67 259 56 HOH HOH . J 5 HOH B 68 260 57 HOH HOH . J 5 HOH B 69 261 58 HOH HOH . J 5 HOH B 70 262 59 HOH HOH . J 5 HOH B 71 263 60 HOH HOH . J 5 HOH B 72 264 61 HOH HOH . J 5 HOH B 73 265 62 HOH HOH . J 5 HOH B 74 266 63 HOH HOH . J 5 HOH B 75 267 64 HOH HOH . J 5 HOH B 76 268 65 HOH HOH . J 5 HOH B 77 269 66 HOH HOH . J 5 HOH B 78 270 67 HOH HOH . J 5 HOH B 79 271 68 HOH HOH . J 5 HOH B 80 272 69 HOH HOH . J 5 HOH B 81 273 70 HOH HOH . J 5 HOH B 82 275 71 HOH HOH . J 5 HOH B 83 276 72 HOH HOH . J 5 HOH B 84 277 73 HOH HOH . J 5 HOH B 85 278 74 HOH HOH . J 5 HOH B 86 279 75 HOH HOH . J 5 HOH B 87 280 76 HOH HOH . J 5 HOH B 88 281 77 HOH HOH . J 5 HOH B 89 282 78 HOH HOH . J 5 HOH B 90 283 79 HOH HOH . J 5 HOH B 91 284 80 HOH HOH . J 5 HOH B 92 285 81 HOH HOH . J 5 HOH B 93 286 82 HOH HOH . J 5 HOH B 94 287 83 HOH HOH . J 5 HOH B 95 288 84 HOH HOH . J 5 HOH B 96 289 85 HOH HOH . J 5 HOH B 97 290 86 HOH HOH . J 5 HOH B 98 291 87 HOH HOH . J 5 HOH B 99 292 88 HOH HOH . J 5 HOH B 100 293 89 HOH HOH . J 5 HOH B 101 294 90 HOH HOH . J 5 HOH B 102 295 91 HOH HOH . J 5 HOH B 103 296 92 HOH HOH . J 5 HOH B 104 297 93 HOH HOH . J 5 HOH B 105 298 94 HOH HOH . J 5 HOH B 106 299 95 HOH HOH . J 5 HOH B 107 300 96 HOH HOH . J 5 HOH B 108 301 97 HOH HOH . J 5 HOH B 109 302 98 HOH HOH . J 5 HOH B 110 303 99 HOH HOH . J 5 HOH B 111 304 100 HOH HOH . J 5 HOH B 112 305 165 HOH HOH . J 5 HOH B 113 306 182 HOH HOH . J 5 HOH B 114 307 188 HOH HOH . J 5 HOH B 115 308 191 HOH HOH . J 5 HOH B 116 309 192 HOH HOH . K 5 HOH A 1 195 101 HOH HOH . K 5 HOH A 2 196 102 HOH HOH . K 5 HOH A 3 197 103 HOH HOH . K 5 HOH A 4 198 198 HOH HOH . K 5 HOH A 5 199 199 HOH HOH . K 5 HOH A 6 200 200 HOH HOH . K 5 HOH A 7 201 104 HOH HOH . K 5 HOH A 8 202 202 HOH HOH . K 5 HOH A 9 203 203 HOH HOH . K 5 HOH A 10 204 105 HOH HOH . K 5 HOH A 11 205 205 HOH HOH . K 5 HOH A 12 206 206 HOH HOH . K 5 HOH A 13 207 106 HOH HOH . K 5 HOH A 14 208 208 HOH HOH . K 5 HOH A 15 209 209 HOH HOH . K 5 HOH A 16 210 107 HOH HOH . K 5 HOH A 17 211 108 HOH HOH . K 5 HOH A 18 212 109 HOH HOH . K 5 HOH A 19 213 110 HOH HOH . K 5 HOH A 20 214 111 HOH HOH . K 5 HOH A 21 215 112 HOH HOH . K 5 HOH A 22 216 113 HOH HOH . K 5 HOH A 23 217 114 HOH HOH . K 5 HOH A 24 218 115 HOH HOH . K 5 HOH A 25 219 116 HOH HOH . K 5 HOH A 26 220 117 HOH HOH . K 5 HOH A 27 221 118 HOH HOH . K 5 HOH A 28 222 119 HOH HOH . K 5 HOH A 29 223 120 HOH HOH . K 5 HOH A 30 224 121 HOH HOH . K 5 HOH A 31 225 122 HOH HOH . K 5 HOH A 32 226 123 HOH HOH . K 5 HOH A 33 227 124 HOH HOH . K 5 HOH A 34 228 125 HOH HOH . K 5 HOH A 35 229 126 HOH HOH . K 5 HOH A 36 230 127 HOH HOH . K 5 HOH A 37 231 128 HOH HOH . K 5 HOH A 38 232 129 HOH HOH . K 5 HOH A 39 233 130 HOH HOH . K 5 HOH A 40 234 131 HOH HOH . K 5 HOH A 41 235 132 HOH HOH . K 5 HOH A 42 236 133 HOH HOH . K 5 HOH A 43 237 134 HOH HOH . K 5 HOH A 44 238 135 HOH HOH . K 5 HOH A 45 239 136 HOH HOH . K 5 HOH A 46 240 137 HOH HOH . K 5 HOH A 47 241 138 HOH HOH . K 5 HOH A 48 242 139 HOH HOH . K 5 HOH A 49 243 140 HOH HOH . K 5 HOH A 50 244 141 HOH HOH . K 5 HOH A 51 245 142 HOH HOH . K 5 HOH A 52 246 143 HOH HOH . K 5 HOH A 53 247 144 HOH HOH . K 5 HOH A 54 248 145 HOH HOH . K 5 HOH A 55 249 146 HOH HOH . K 5 HOH A 56 250 147 HOH HOH . K 5 HOH A 57 251 148 HOH HOH . K 5 HOH A 58 252 149 HOH HOH . K 5 HOH A 59 253 150 HOH HOH . K 5 HOH A 60 254 151 HOH HOH . K 5 HOH A 61 255 152 HOH HOH . K 5 HOH A 62 256 153 HOH HOH . K 5 HOH A 63 257 154 HOH HOH . K 5 HOH A 64 258 155 HOH HOH . K 5 HOH A 65 259 156 HOH HOH . K 5 HOH A 66 260 157 HOH HOH . K 5 HOH A 67 261 158 HOH HOH . K 5 HOH A 68 262 159 HOH HOH . K 5 HOH A 69 263 160 HOH HOH . K 5 HOH A 70 264 161 HOH HOH . K 5 HOH A 71 265 162 HOH HOH . K 5 HOH A 72 266 163 HOH HOH . K 5 HOH A 73 267 164 HOH HOH . K 5 HOH A 74 268 166 HOH HOH . K 5 HOH A 75 269 167 HOH HOH . K 5 HOH A 76 270 168 HOH HOH . K 5 HOH A 77 271 169 HOH HOH . K 5 HOH A 78 272 170 HOH HOH . K 5 HOH A 79 273 171 HOH HOH . K 5 HOH A 80 275 172 HOH HOH . K 5 HOH A 81 276 173 HOH HOH . K 5 HOH A 82 277 174 HOH HOH . K 5 HOH A 83 278 175 HOH HOH . K 5 HOH A 84 279 176 HOH HOH . K 5 HOH A 85 280 177 HOH HOH . K 5 HOH A 86 281 178 HOH HOH . K 5 HOH A 87 282 179 HOH HOH . K 5 HOH A 88 283 180 HOH HOH . K 5 HOH A 89 284 181 HOH HOH . K 5 HOH A 90 285 183 HOH HOH . K 5 HOH A 91 286 184 HOH HOH . K 5 HOH A 92 287 185 HOH HOH . K 5 HOH A 93 288 186 HOH HOH . K 5 HOH A 94 289 187 HOH HOH . K 5 HOH A 95 290 189 HOH HOH . K 5 HOH A 96 291 190 HOH HOH . K 5 HOH A 97 292 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 20.355 _atom_site.Cartn_y -10.033 _atom_site.Cartn_z -31.894 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 550 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #