data_3REM # _model_server_result.job_id z0GJdYWTfNefCkzudaeSQA _model_server_result.datetime_utc '2024-11-13 11:04:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 3REM # _exptl.entry_id 3REM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3REM _cell.length_a 47.316 _cell.length_b 60.254 _cell.length_c 60.607 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3REM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 277 n n C OXT PYR sing 278 n n C CA PYR sing 279 n n OXT HXT PYR sing 280 n n CA O3 PYR doub 281 n n CA CB PYR sing 282 n n CB HB1 PYR sing 283 n n CB HB2 PYR sing 284 n n CB HB3 PYR sing 285 n n # _atom_sites.entry_id 3REM _atom_sites.fract_transf_matrix[1][1] 0.021134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAL A 1 301 301 SAL SAL . D 3 PYR B 1 201 201 PYR PYR . E 3 PYR B 1 102 201 PYR PYR . F 2 SAL B 1 301 301 SAL SAL . G 4 HOH A 1 102 3 HOH HOH . G 4 HOH A 2 103 6 HOH HOH . G 4 HOH A 3 104 7 HOH HOH . G 4 HOH A 4 105 10 HOH HOH . G 4 HOH A 5 106 11 HOH HOH . G 4 HOH A 6 107 12 HOH HOH . G 4 HOH A 7 108 13 HOH HOH . G 4 HOH A 8 109 14 HOH HOH . G 4 HOH A 9 110 15 HOH HOH . G 4 HOH A 10 111 16 HOH HOH . G 4 HOH A 11 112 17 HOH HOH . G 4 HOH A 12 113 20 HOH HOH . G 4 HOH A 13 114 21 HOH HOH . G 4 HOH A 14 115 23 HOH HOH . G 4 HOH A 15 116 24 HOH HOH . G 4 HOH A 16 117 25 HOH HOH . G 4 HOH A 17 118 26 HOH HOH . G 4 HOH A 18 119 29 HOH HOH . G 4 HOH A 19 120 32 HOH HOH . G 4 HOH A 20 121 33 HOH HOH . G 4 HOH A 21 122 34 HOH HOH . G 4 HOH A 22 123 35 HOH HOH . G 4 HOH A 23 124 36 HOH HOH . G 4 HOH A 24 125 37 HOH HOH . G 4 HOH A 25 126 38 HOH HOH . G 4 HOH A 26 127 39 HOH HOH . G 4 HOH A 27 128 40 HOH HOH . G 4 HOH A 28 129 43 HOH HOH . G 4 HOH A 29 130 44 HOH HOH . H 4 HOH B 1 103 1 HOH HOH . H 4 HOH B 2 104 2 HOH HOH . H 4 HOH B 3 105 4 HOH HOH . H 4 HOH B 4 106 5 HOH HOH . H 4 HOH B 5 107 8 HOH HOH . H 4 HOH B 6 108 9 HOH HOH . H 4 HOH B 7 109 18 HOH HOH . H 4 HOH B 8 110 19 HOH HOH . H 4 HOH B 9 111 22 HOH HOH . H 4 HOH B 10 112 27 HOH HOH . H 4 HOH B 11 113 28 HOH HOH . H 4 HOH B 12 114 30 HOH HOH . H 4 HOH B 13 115 31 HOH HOH . H 4 HOH B 14 116 41 HOH HOH . H 4 HOH B 15 117 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . E 3 17.55 -11.478 6.444 1 17.53 ? C PYR 102 B 1 HETATM 2 O O PYR . . . E 3 18.268 -12.196 5.614 1 18.72 ? O PYR 102 B 1 HETATM 3 O OXT PYR . . . E 3 18.164 -10.762 7.36 1 16.85 ? OXT PYR 102 B 1 HETATM 4 C CA PYR . . . E 3 16.152 -11.476 6.348 1 17.27 ? CA PYR 102 B 1 HETATM 5 O O3 PYR . . . E 3 15.43 -10.757 7.165 1 17.09 ? O3 PYR 102 B 1 HETATM 6 C CB PYR . . . E 3 15.432 -12.296 5.318 1 16.86 ? CB PYR 102 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #