data_3REO
#
_model_server_result.job_id            uKPIFvbqSBGOmOeUdEhEFw 
_model_server_result.datetime_utc      '2024-10-17 13:24:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3reo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":370}' 
#
_entry.id    3REO 
#
_exptl.entry_id    3REO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.67 
_cell.angle_gamma         90 
_cell.entry_id            3REO 
_cell.length_a            66.241 
_cell.length_b            150.754 
_cell.length_c            68.302 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3REO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H,I,L,N 1 1 
B,D,F,G,J,K,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 301 n n 
N HN1 SAH sing 302 n n 
N HN2 SAH sing 303 n n 
CA CB SAH sing 304 n n 
CA C SAH sing 305 n n 
CA HA SAH sing 306 n n 
CB CG SAH sing 307 n n 
CB HB1 SAH sing 308 n n 
CB HB2 SAH sing 309 n n 
CG SD SAH sing 310 n n 
CG HG1 SAH sing 311 n n 
CG HG2 SAH sing 312 n n 
SD C5' SAH sing 313 n n 
C O SAH doub 314 n n 
C OXT SAH sing 315 n n 
OXT HXT SAH sing 316 n n 
C5' C4' SAH sing 317 n n 
C5' "H5'1" SAH sing 318 n n 
C5' "H5'2" SAH sing 319 n n 
C4' O4' SAH sing 320 n n 
C4' C3' SAH sing 321 n n 
C4' H4' SAH sing 322 n n 
O4' C1' SAH sing 323 n n 
C3' O3' SAH sing 324 n n 
C3' C2' SAH sing 325 n n 
C3' H3' SAH sing 326 n n 
O3' HO3' SAH sing 327 n n 
C2' O2' SAH sing 328 n n 
C2' C1' SAH sing 329 n n 
C2' H2' SAH sing 330 n n 
O2' HO2' SAH sing 331 n n 
C1' N9 SAH sing 332 n n 
C1' H1' SAH sing 333 n n 
N9 C8 SAH sing 334 n y 
N9 C4 SAH sing 335 n y 
C8 N7 SAH doub 336 n y 
C8 H8 SAH sing 337 n n 
N7 C5 SAH sing 338 n y 
C5 C6 SAH sing 339 n y 
C5 C4 SAH doub 340 n y 
C6 N6 SAH sing 341 n n 
C6 N1 SAH doub 342 n y 
N6 HN61 SAH sing 343 n n 
N6 HN62 SAH sing 344 n n 
N1 C2 SAH sing 345 n y 
C2 N3 SAH doub 346 n y 
C2 H2 SAH sing 347 n n 
N3 C4 SAH sing 348 n y 
#
_atom_sites.entry_id                     3REO 
_atom_sites.fract_transf_matrix[1][1]    0.015096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000704 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH A 1 370 369 SAH SAH . 
F 3 EUG B 1 369 368 EUG IEG . 
G 2 SAH B 1 370 369 SAH SAH . 
H 3 EUG C 1 369 369 EUG EUG . 
I 2 SAH C 1 370 369 SAH SAH . 
J 3 EUG D 1 369 368 EUG IEG . 
K 2 SAH D 1 370 369 SAH SAH . 
L 4 HOH A 1 371 8 HOH HOH . 
L 4 HOH A 2 372 12 HOH HOH . 
L 4 HOH A 3 373 16 HOH HOH . 
L 4 HOH A 4 374 19 HOH HOH . 
L 4 HOH A 5 375 20 HOH HOH . 
L 4 HOH A 6 376 25 HOH HOH . 
L 4 HOH A 7 377 26 HOH HOH . 
L 4 HOH A 8 378 27 HOH HOH . 
L 4 HOH A 9 379 42 HOH HOH . 
L 4 HOH A 10 380 45 HOH HOH . 
L 4 HOH A 11 381 46 HOH HOH . 
L 4 HOH A 12 382 52 HOH HOH . 
L 4 HOH A 13 383 54 HOH HOH . 
L 4 HOH A 14 384 55 HOH HOH . 
L 4 HOH A 15 385 58 HOH HOH . 
L 4 HOH A 16 386 71 HOH HOH . 
L 4 HOH A 17 387 73 HOH HOH . 
L 4 HOH A 18 388 75 HOH HOH . 
L 4 HOH A 19 389 80 HOH HOH . 
L 4 HOH A 20 390 81 HOH HOH . 
L 4 HOH A 21 391 86 HOH HOH . 
L 4 HOH A 22 392 89 HOH HOH . 
L 4 HOH A 23 393 97 HOH HOH . 
L 4 HOH A 24 394 6 HOH HOH . 
L 4 HOH A 25 395 8 HOH HOH . 
L 4 HOH A 26 396 13 HOH HOH . 
L 4 HOH A 27 397 14 HOH HOH . 
L 4 HOH A 28 398 17 HOH HOH . 
L 4 HOH A 29 399 23 HOH HOH . 
L 4 HOH A 30 400 26 HOH HOH . 
L 4 HOH A 31 401 36 HOH HOH . 
L 4 HOH A 32 402 37 HOH HOH . 
L 4 HOH A 33 403 41 HOH HOH . 
L 4 HOH A 34 404 42 HOH HOH . 
L 4 HOH A 35 405 51 HOH HOH . 
L 4 HOH A 36 406 5 HOH HOH . 
L 4 HOH A 37 407 7 HOH HOH . 
L 4 HOH A 38 408 9 HOH HOH . 
L 4 HOH A 39 409 10 HOH HOH . 
L 4 HOH A 40 410 14 HOH HOH . 
L 4 HOH A 41 411 15 HOH HOH . 
L 4 HOH A 42 412 17 HOH HOH . 
L 4 HOH A 43 413 18 HOH HOH . 
L 4 HOH A 44 414 23 HOH HOH . 
L 4 HOH A 45 415 25 HOH HOH . 
L 4 HOH A 46 416 26 HOH HOH . 
M 4 HOH B 1 371 1 HOH HOH . 
M 4 HOH B 2 372 3 HOH HOH . 
M 4 HOH B 3 373 4 HOH HOH . 
M 4 HOH B 4 374 6 HOH HOH . 
M 4 HOH B 5 375 9 HOH HOH . 
M 4 HOH B 6 376 11 HOH HOH . 
M 4 HOH B 7 377 13 HOH HOH . 
M 4 HOH B 8 378 14 HOH HOH . 
M 4 HOH B 9 379 17 HOH HOH . 
M 4 HOH B 10 380 22 HOH HOH . 
M 4 HOH B 11 381 24 HOH HOH . 
M 4 HOH B 12 382 28 HOH HOH . 
M 4 HOH B 13 383 29 HOH HOH . 
M 4 HOH B 14 384 31 HOH HOH . 
M 4 HOH B 15 385 36 HOH HOH . 
M 4 HOH B 16 386 37 HOH HOH . 
M 4 HOH B 17 387 38 HOH HOH . 
M 4 HOH B 18 388 40 HOH HOH . 
M 4 HOH B 19 389 41 HOH HOH . 
M 4 HOH B 20 390 43 HOH HOH . 
M 4 HOH B 21 391 44 HOH HOH . 
M 4 HOH B 22 392 50 HOH HOH . 
M 4 HOH B 23 393 51 HOH HOH . 
M 4 HOH B 24 394 53 HOH HOH . 
M 4 HOH B 25 395 57 HOH HOH . 
M 4 HOH B 26 396 62 HOH HOH . 
M 4 HOH B 27 397 63 HOH HOH . 
M 4 HOH B 28 398 64 HOH HOH . 
M 4 HOH B 29 399 65 HOH HOH . 
M 4 HOH B 30 400 68 HOH HOH . 
M 4 HOH B 31 401 72 HOH HOH . 
M 4 HOH B 32 402 74 HOH HOH . 
M 4 HOH B 33 403 76 HOH HOH . 
M 4 HOH B 34 404 82 HOH HOH . 
M 4 HOH B 35 405 85 HOH HOH . 
M 4 HOH B 36 406 87 HOH HOH . 
M 4 HOH B 37 407 88 HOH HOH . 
M 4 HOH B 38 408 91 HOH HOH . 
M 4 HOH B 39 409 92 HOH HOH . 
M 4 HOH B 40 410 93 HOH HOH . 
M 4 HOH B 41 411 98 HOH HOH . 
M 4 HOH B 42 412 100 HOH HOH . 
M 4 HOH B 43 413 2 HOH HOH . 
M 4 HOH B 44 414 7 HOH HOH . 
M 4 HOH B 45 415 10 HOH HOH . 
M 4 HOH B 46 416 11 HOH HOH . 
M 4 HOH B 47 417 12 HOH HOH . 
M 4 HOH B 48 418 16 HOH HOH . 
M 4 HOH B 49 419 18 HOH HOH . 
M 4 HOH B 50 420 22 HOH HOH . 
M 4 HOH B 51 421 24 HOH HOH . 
M 4 HOH B 52 422 25 HOH HOH . 
M 4 HOH B 53 423 29 HOH HOH . 
M 4 HOH B 54 424 31 HOH HOH . 
M 4 HOH B 55 425 33 HOH HOH . 
M 4 HOH B 56 426 39 HOH HOH . 
M 4 HOH B 57 427 40 HOH HOH . 
M 4 HOH B 58 428 46 HOH HOH . 
M 4 HOH B 59 429 50 HOH HOH . 
M 4 HOH B 60 430 54 HOH HOH . 
M 4 HOH B 61 431 1 HOH HOH . 
M 4 HOH B 62 432 2 HOH HOH . 
M 4 HOH B 63 433 8 HOH HOH . 
M 4 HOH B 64 434 19 HOH HOH . 
M 4 HOH B 65 435 21 HOH HOH . 
M 4 HOH B 66 436 22 HOH HOH . 
M 4 HOH B 67 437 24 HOH HOH . 
M 4 HOH B 68 438 28 HOH HOH . 
M 4 HOH B 69 439 29 HOH HOH . 
N 4 HOH C 1 371 2 HOH HOH . 
N 4 HOH C 2 372 5 HOH HOH . 
N 4 HOH C 3 373 23 HOH HOH . 
N 4 HOH C 4 374 30 HOH HOH . 
N 4 HOH C 5 375 32 HOH HOH . 
N 4 HOH C 6 376 33 HOH HOH . 
N 4 HOH C 7 377 34 HOH HOH . 
N 4 HOH C 8 378 39 HOH HOH . 
N 4 HOH C 9 379 48 HOH HOH . 
N 4 HOH C 10 380 56 HOH HOH . 
N 4 HOH C 11 381 61 HOH HOH . 
N 4 HOH C 12 382 70 HOH HOH . 
N 4 HOH C 13 383 83 HOH HOH . 
N 4 HOH C 14 384 84 HOH HOH . 
N 4 HOH C 15 385 90 HOH HOH . 
N 4 HOH C 16 386 95 HOH HOH . 
N 4 HOH C 17 387 96 HOH HOH . 
N 4 HOH C 18 388 101 HOH HOH . 
N 4 HOH C 19 389 102 HOH HOH . 
N 4 HOH C 20 390 103 HOH HOH . 
N 4 HOH C 21 391 1 HOH HOH . 
N 4 HOH C 22 392 3 HOH HOH . 
N 4 HOH C 23 393 9 HOH HOH . 
N 4 HOH C 24 394 19 HOH HOH . 
N 4 HOH C 25 395 20 HOH HOH . 
N 4 HOH C 26 396 21 HOH HOH . 
N 4 HOH C 27 397 27 HOH HOH . 
N 4 HOH C 28 398 34 HOH HOH . 
N 4 HOH C 29 399 35 HOH HOH . 
N 4 HOH C 30 400 44 HOH HOH . 
N 4 HOH C 31 401 47 HOH HOH . 
N 4 HOH C 32 402 53 HOH HOH . 
N 4 HOH C 33 403 55 HOH HOH . 
N 4 HOH C 34 404 4 HOH HOH . 
N 4 HOH C 35 405 11 HOH HOH . 
N 4 HOH C 36 406 12 HOH HOH . 
N 4 HOH C 37 407 13 HOH HOH . 
N 4 HOH C 38 408 20 HOH HOH . 
N 4 HOH C 39 409 27 HOH HOH . 
O 4 HOH D 1 371 7 HOH HOH . 
O 4 HOH D 2 372 10 HOH HOH . 
O 4 HOH D 3 373 15 HOH HOH . 
O 4 HOH D 4 374 18 HOH HOH . 
O 4 HOH D 5 375 21 HOH HOH . 
O 4 HOH D 6 376 35 HOH HOH . 
O 4 HOH D 7 377 47 HOH HOH . 
O 4 HOH D 8 378 49 HOH HOH . 
O 4 HOH D 9 379 59 HOH HOH . 
O 4 HOH D 10 380 60 HOH HOH . 
O 4 HOH D 11 381 66 HOH HOH . 
O 4 HOH D 12 382 67 HOH HOH . 
O 4 HOH D 13 383 69 HOH HOH . 
O 4 HOH D 14 384 77 HOH HOH . 
O 4 HOH D 15 385 78 HOH HOH . 
O 4 HOH D 16 386 79 HOH HOH . 
O 4 HOH D 17 387 94 HOH HOH . 
O 4 HOH D 18 388 99 HOH HOH . 
O 4 HOH D 19 389 104 HOH HOH . 
O 4 HOH D 20 390 4 HOH HOH . 
O 4 HOH D 21 391 5 HOH HOH . 
O 4 HOH D 22 392 15 HOH HOH . 
O 4 HOH D 23 393 28 HOH HOH . 
O 4 HOH D 24 394 30 HOH HOH . 
O 4 HOH D 25 395 32 HOH HOH . 
O 4 HOH D 26 396 43 HOH HOH . 
O 4 HOH D 27 397 45 HOH HOH . 
O 4 HOH D 28 398 48 HOH HOH . 
O 4 HOH D 29 399 49 HOH HOH . 
O 4 HOH D 30 400 52 HOH HOH . 
O 4 HOH D 31 401 3 HOH HOH . 
O 4 HOH D 32 402 6 HOH HOH . 
O 4 HOH D 33 403 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . I 2 -28.584 -10.754 -5.961 1 36.86 ? N SAH 370 C 1 
HETATM 2 C CA SAH . . . I 2 -28.434 -10.828 -4.484 1 39.54 ? CA SAH 370 C 1 
HETATM 3 C CB SAH . . . I 2 -27.246 -11.679 -3.98 1 39.27 ? CB SAH 370 C 1 
HETATM 4 C CG SAH . . . I 2 -25.869 -11.253 -4.497 1 33.42 ? CG SAH 370 C 1 
HETATM 5 S SD SAH . . . I 2 -24.655 -12.374 -3.793 1 31.44 ? SD SAH 370 C 1 
HETATM 6 C C SAH . . . I 2 -28.302 -9.428 -3.973 1 41.18 ? C SAH 370 C 1 
HETATM 7 O O SAH . . . I 2 -28.583 -9.233 -2.79 1 43.92 ? O SAH 370 C 1 
HETATM 8 O OXT SAH . . . I 2 -27.942 -8.441 -4.665 1 41.47 ? OXT SAH 370 C 1 
HETATM 9 C C5' SAH . . . I 2 -24.312 -13.482 -5.131 1 26.4 ? C5' SAH 370 C 1 
HETATM 10 C C4' SAH . . . I 2 -25.421 -14.556 -5.202 1 27.08 ? C4' SAH 370 C 1 
HETATM 11 O O4' SAH . . . I 2 -25.128 -15.362 -6.357 1 25.94 ? O4' SAH 370 C 1 
HETATM 12 C C3' SAH . . . I 2 -25.477 -15.497 -4 1 29.48 ? C3' SAH 370 C 1 
HETATM 13 O O3' SAH . . . I 2 -26.82 -15.589 -3.438 1 26.99 ? O3' SAH 370 C 1 
HETATM 14 C C2' SAH . . . I 2 -25.046 -16.815 -4.594 1 26.38 ? C2' SAH 370 C 1 
HETATM 15 O O2' SAH . . . I 2 -25.585 -17.928 -3.895 1 27.69 ? O2' SAH 370 C 1 
HETATM 16 C C1' SAH . . . I 2 -25.538 -16.672 -6.006 1 24.75 ? C1' SAH 370 C 1 
HETATM 17 N N9 SAH . . . I 2 -24.804 -17.614 -6.877 1 28.43 ? N9 SAH 370 C 1 
HETATM 18 C C8 SAH . . . I 2 -23.435 -17.799 -6.897 1 25.84 ? C8 SAH 370 C 1 
HETATM 19 N N7 SAH . . . I 2 -23.079 -18.705 -7.847 1 25.52 ? N7 SAH 370 C 1 
HETATM 20 C C5 SAH . . . I 2 -24.237 -19.08 -8.411 1 27.21 ? C5 SAH 370 C 1 
HETATM 21 C C6 SAH . . . I 2 -24.572 -20.004 -9.471 1 26.52 ? C6 SAH 370 C 1 
HETATM 22 N N6 SAH . . . I 2 -23.547 -20.71 -10.036 1 24.22 ? N6 SAH 370 C 1 
HETATM 23 N N1 SAH . . . I 2 -25.883 -20.108 -9.823 1 27.92 ? N1 SAH 370 C 1 
HETATM 24 C C2 SAH . . . I 2 -26.908 -19.454 -9.197 1 30.29 ? C2 SAH 370 C 1 
HETATM 25 N N3 SAH . . . I 2 -26.669 -18.551 -8.209 1 26.42 ? N3 SAH 370 C 1 
HETATM 26 C C4 SAH . . . I 2 -25.379 -18.339 -7.803 1 25.32 ? C4 SAH 370 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           26 
#