data_3REY # _model_server_result.job_id p2DDpFVDjb-hGvapcjk7NA _model_server_result.datetime_utc '2024-11-21 13:39:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3REY # _exptl.entry_id 3REY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.485 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-aminoethyl)-2-[4-(2,6-dioxo-1,3-dipropyl-2,3,6,7-tetrahydro-1H-purin-8-yl)phenoxy]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3REY _cell.length_a 111.865 _cell.length_b 113.061 _cell.length_c 126.802 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3REY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C21 H28 N6 O4' _chem_comp.formula_weight 428.485 _chem_comp.id XAC _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-aminoethyl)-2-[4-(2,6-dioxo-1,3-dipropyl-2,3,6,7-tetrahydro-1H-purin-8-yl)phenoxy]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 XAC doub 374 n n C1 N2 XAC sing 375 n n C1 C5 XAC sing 376 n n N1 C2 XAC sing 377 n n N1 C4 XAC sing 378 n n N1 C8 XAC sing 379 n n C2 N2 XAC sing 380 n n C2 O2 XAC doub 381 n n N2 C6 XAC sing 382 n n C3 N3 XAC doub 383 n y C3 N4 XAC sing 384 n y C3 C15 XAC sing 385 n y N3 C4 XAC sing 386 n y O3 C12 XAC sing 387 n n O3 C18 XAC sing 388 n n C4 C5 XAC doub 389 n y N4 C5 XAC sing 390 n y O4 C19 XAC doub 391 n n N5 C19 XAC sing 392 n n N5 C20 XAC sing 393 n n C6 C7 XAC sing 394 n n N6 C21 XAC sing 395 n n C7 C11 XAC sing 396 n n C8 C9 XAC sing 397 n n C9 C10 XAC sing 398 n n C12 C13 XAC doub 399 n y C12 C17 XAC sing 400 n y C13 C14 XAC sing 401 n y C14 C15 XAC doub 402 n y C15 C16 XAC sing 403 n y C16 C17 XAC doub 404 n y C18 C19 XAC sing 405 n n C20 C21 XAC sing 406 n n N4 HN4 XAC sing 407 n n N5 HN5 XAC sing 408 n n C6 H6 XAC sing 409 n n C6 H6A XAC sing 410 n n N6 HN6 XAC sing 411 n n N6 HN6A XAC sing 412 n n C7 H7 XAC sing 413 n n C7 H7A XAC sing 414 n n C8 H8 XAC sing 415 n n C8 H8A XAC sing 416 n n C9 H9 XAC sing 417 n n C9 H9A XAC sing 418 n n C10 H10 XAC sing 419 n n C10 H10A XAC sing 420 n n C10 H10B XAC sing 421 n n C11 H11 XAC sing 422 n n C11 H11A XAC sing 423 n n C11 H11B XAC sing 424 n n C13 H13 XAC sing 425 n n C14 H14 XAC sing 426 n n C16 H16 XAC sing 427 n n C17 H17 XAC sing 428 n n C18 H18 XAC sing 429 n n C18 H18A XAC sing 430 n n C20 H20 XAC sing 431 n n C20 H20A XAC sing 432 n n C21 H21 XAC sing 433 n n C21 H21A XAC sing 434 n n # _atom_sites.entry_id 3REY _atom_sites.fract_transf_matrix[1][1] 0.008939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id XAC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id XAC _pdbx_nonpoly_scheme.auth_mon_id XAC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XAC . . . B 2 48.999 24.127 30.369 1 135.88 ? C1 XAC 999 A 1 HETATM 2 N N1 XAC . . . B 2 47.42 21.95 31.232 1 138.86 ? N1 XAC 999 A 1 HETATM 3 O O1 XAC . . . B 2 49.72 25.08 30.049 1 134.02 ? O1 XAC 999 A 1 HETATM 4 C C2 XAC . . . B 2 47.253 22.48 29.971 1 138.43 ? C2 XAC 999 A 1 HETATM 5 N N2 XAC . . . B 2 48.022 23.568 29.592 1 136.32 ? N2 XAC 999 A 1 HETATM 6 O O2 XAC . . . B 2 46.413 21.992 29.2 1 138.97 ? O2 XAC 999 A 1 HETATM 7 C C3 XAC . . . B 2 49.71 23.027 33.745 1 137.42 ? C3 XAC 999 A 1 HETATM 8 N N3 XAC . . . B 2 48.744 22.145 33.419 1 137.76 ? N3 XAC 999 A 1 HETATM 9 O O3 XAC . . . B 2 52.177 23.419 38.861 1 138.97 ? O3 XAC 999 A 1 HETATM 10 C C4 XAC . . . B 2 48.393 22.487 32.111 1 138.09 ? C4 XAC 999 A 1 HETATM 11 N N4 XAC . . . B 2 49.971 23.867 32.721 1 137.07 ? N4 XAC 999 A 1 HETATM 12 O O4 XAC . . . B 2 53.469 23.025 41.513 1 139.58 ? O4 XAC 999 A 1 HETATM 13 C C5 XAC . . . B 2 49.132 23.52 31.679 1 137.35 ? C5 XAC 999 A 1 HETATM 14 N N5 XAC . . . B 2 51.509 23.992 42.074 1 136.41 ? N5 XAC 999 A 1 HETATM 15 C C6 XAC . . . B 2 47.74 24.215 28.29 1 134.91 ? C6 XAC 999 A 1 HETATM 16 N N6 XAC . . . B 2 51.161 25.965 45.217 1 131.76 ? N6 XAC 999 A 1 HETATM 17 C C7 XAC . . . B 2 46.694 25.338 28.436 1 130.45 ? C7 XAC 999 A 1 HETATM 18 C C8 XAC . . . B 2 46.58 20.848 31.722 1 139.84 ? C8 XAC 999 A 1 HETATM 19 C C9 XAC . . . B 2 47.275 19.484 31.565 1 140.76 ? C9 XAC 999 A 1 HETATM 20 C C10 XAC . . . B 2 46.49 18.35 32.233 1 142.47 ? C10 XAC 999 A 1 HETATM 21 C C11 XAC . . . B 2 46.268 25.934 27.091 1 128.15 ? C11 XAC 999 A 1 HETATM 22 C C12 XAC . . . B 2 51.572 23.242 37.635 1 136.8 ? C12 XAC 999 A 1 HETATM 23 C C13 XAC . . . B 2 50.572 22.276 37.365 1 138.29 ? C13 XAC 999 A 1 HETATM 24 C C14 XAC . . . B 2 49.974 22.199 36.092 1 137.27 ? C14 XAC 999 A 1 HETATM 25 C C15 XAC . . . B 2 50.368 23.077 35.056 1 136.45 ? C15 XAC 999 A 1 HETATM 26 C C16 XAC . . . B 2 51.391 24.017 35.316 1 135.82 ? C16 XAC 999 A 1 HETATM 27 C C17 XAC . . . B 2 51.984 24.096 36.593 1 135.27 ? C17 XAC 999 A 1 HETATM 28 C C18 XAC . . . B 2 51.64 22.721 39.981 1 141.47 ? C18 XAC 999 A 1 HETATM 29 C C19 XAC . . . B 2 52.284 23.261 41.262 1 139.22 ? C19 XAC 999 A 1 HETATM 30 C C20 XAC . . . B 2 51.925 24.58 43.339 1 134.77 ? C20 XAC 999 A 1 HETATM 31 C C21 XAC . . . B 2 50.76 25.37 43.957 1 131.01 ? C21 XAC 999 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #