data_3RFM # _model_server_result.job_id mDCMDvRK3RSrA7qjxbRmLg _model_server_result.datetime_utc '2024-12-01 04:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":330}' # _entry.id 3RFM # _exptl.entry_id 3RFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RFM _cell.length_a 112.327 _cell.length_b 113.328 _cell.length_c 129.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 70 n y N1 C10 CFF sing 71 n n N1 C6 CFF sing 72 n y C2 N3 CFF sing 73 n y C2 O11 CFF doub 74 n n C10 H101 CFF sing 75 n n C10 H102 CFF sing 76 n n C10 H103 CFF sing 77 n n C6 C5 CFF sing 78 n y C6 O13 CFF doub 79 n n N3 C12 CFF sing 80 n n N3 C4 CFF sing 81 n y C12 H121 CFF sing 82 n n C12 H122 CFF sing 83 n n C12 H123 CFF sing 84 n n C4 C5 CFF doub 85 n y C4 N9 CFF sing 86 n y C5 N7 CFF sing 87 n y N9 C8 CFF doub 88 n y N7 C8 CFF sing 89 n y N7 C14 CFF sing 90 n n C8 H81 CFF sing 91 n n C14 H141 CFF sing 92 n n C14 H142 CFF sing 93 n n C14 H143 CFF sing 94 n n # _atom_sites.entry_id 3RFM _atom_sites.fract_transf_matrix[1][1] 0.008903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CFF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 330 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id CFF _pdbx_nonpoly_scheme.auth_mon_id CAF _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . B 2 9.174 -33.156 -31.881 1 147.73 ? N1 CFF 330 A 1 HETATM 2 C C2 CFF . . . B 2 9.511 -33.973 -32.948 1 148.15 ? C2 CFF 330 A 1 HETATM 3 C C10 CFF . . . B 2 10.18 -32.79 -30.862 1 138.32 ? C10 CFF 330 A 1 HETATM 4 C C6 CFF . . . B 2 7.88 -32.698 -31.748 1 147.4 ? C6 CFF 330 A 1 HETATM 5 N N3 CFF . . . B 2 8.56 -34.329 -33.882 1 149.3 ? N3 CFF 330 A 1 HETATM 6 O O11 CFF . . . B 2 10.781 -34.432 -33.079 1 142.4 ? O11 CFF 330 A 1 HETATM 7 C C12 CFF . . . B 2 8.923 -35.204 -35.004 1 147.42 ? C12 CFF 330 A 1 HETATM 8 C C4 CFF . . . B 2 7.287 -33.864 -33.735 1 146.85 ? C4 CFF 330 A 1 HETATM 9 C C5 CFF . . . B 2 6.925 -33.068 -32.699 1 145.81 ? C5 CFF 330 A 1 HETATM 10 N N9 CFF . . . B 2 6.24 -34.112 -34.55 1 147.23 ? N9 CFF 330 A 1 HETATM 11 O O13 CFF . . . B 2 7.552 -31.908 -30.705 1 147.52 ? O13 CFF 330 A 1 HETATM 12 N N7 CFF . . . B 2 5.617 -32.775 -32.828 1 147.22 ? N7 CFF 330 A 1 HETATM 13 C C8 CFF . . . B 2 5.235 -33.422 -33.954 1 148.06 ? C8 CFF 330 A 1 HETATM 14 C C14 CFF . . . B 2 4.727 -31.975 -31.994 1 145.92 ? C14 CFF 330 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 1098 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #