data_3RFR
#
_model_server_result.job_id            Uu8-RdDT0RxcLD4EK4caWQ 
_model_server_result.datetime_utc      '2024-11-19 18:45:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rfr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":258}' 
#
_entry.id    3RFR 
#
_exptl.entry_id    3RFR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RFR 
_cell.length_a            107.718 
_cell.length_b            178.31 
_cell.length_c            183.147 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RFR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 U N N 
? 6 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 29 A HIS 29 1_555 L CU1 CUA . A CUA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A ND1 HIS 29 A HIS 29 1_555 L CU2 CUA . A CUA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc3 A N HIS 29 A HIS 29 1_555 L CU2 CUA . A CUA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc4 A ND1 HIS 133 A HIS 133 1_555 L CU2 CUA . A CUA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 A NE2 HIS 135 A HIS 135 1_555 L CU2 CUA . A CUA 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
metalc ? metalc6 G OD2 ASP 93 C ASP 93 1_555 O ZN ZN . C ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc7 G OD2 ASP 129 C ASP 129 1_555 N ZN ZN . C ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
metalc ? metalc8 G NE2 HIS 133 C HIS 133 1_555 N ZN ZN . C ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc9 G NE2 HIS 146 C HIS 146 1_555 N ZN ZN . C ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc10 G ND1 HIS 177 C HIS 177 1_555 O ZN ZN . C ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc11 N ZN ZN . C ZN 257 1_555 X O HOH . C HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc12 H OD2 ASP 93 G ASP 93 1_555 Q ZN ZN . G ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc13 H OD2 ASP 129 G ASP 129 1_555 P ZN ZN . G ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
metalc ? metalc14 H NE2 HIS 133 G HIS 133 1_555 P ZN ZN . G ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc15 H NE2 HIS 146 G HIS 146 1_555 P ZN ZN . G ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc16 P ZN ZN . G ZN 257 1_555 Y O HOH . G HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc17 I OD2 ASP 129 K ASP 129 1_555 R ZN ZN . K ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc18 I NE2 HIS 133 K HIS 133 1_555 R ZN ZN . K ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc19 R ZN ZN . K ZN 257 1_555 Z O HOH . K HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc20 J ND1 HIS 29 E HIS 29 1_555 T CU CU . E CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc21 J N HIS 29 E HIS 29 1_555 T CU CU . E CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc22 J ND1 HIS 133 E HIS 133 1_555 T CU CU . E CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc23 J NE2 HIS 135 E HIS 135 1_555 T CU CU . E CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc24 K ND1 HIS 29 I HIS 29 1_555 V CU CU . I CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc25 K N HIS 29 I HIS 29 1_555 V CU CU . I CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc26 K ND1 HIS 133 I HIS 133 1_555 V CU CU . I CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc27 K NE2 HIS 135 I HIS 135 1_555 V CU CU . I CU 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RFR 
_atom_sites.fract_transf_matrix[1][1]    0.009283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 5 CUA A 1 420 3 CUA CUA . 
M 6 ZN A 1 421 9 ZN ZN . 
N 6 ZN C 1 257 1 ZN ZN . 
O 6 ZN C 1 258 5 ZN ZN . 
P 6 ZN G 1 257 4 ZN ZN . 
Q 6 ZN G 1 258 6 ZN ZN . 
R 6 ZN K 1 257 3 ZN ZN . 
S 6 ZN K 1 258 7 ZN ZN . 
T 7 CU E 1 420 3 CU CU . 
U 6 ZN E 1 421 2 ZN ZN . 
V 7 CU I 1 420 3 CU CU . 
W 6 ZN I 1 421 8 ZN ZN . 
X 8 HOH C 1 259 1 HOH HOH . 
Y 8 HOH G 1 259 2 HOH HOH . 
Z 8 HOH K 1 259 3 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         S 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               48.744 
_atom_site.Cartn_y               -4.885 
_atom_site.Cartn_z               -18.294 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        141.86 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           258 
_atom_site.auth_asym_id          K 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#