data_3RG2
#
_model_server_result.job_id            KJvvLEsKgA8OXgLfDM-iCQ 
_model_server_result.datetime_utc      '2024-11-14 09:59:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":618}' 
#
_entry.id    3RG2 
#
_exptl.entry_id    3RG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    25 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.06 
_cell.angle_gamma         90 
_cell.entry_id            3RG2 
_cell.length_a            160.575 
_cell.length_b            101.771 
_cell.length_c            240.678 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 
C,H,X,Y,Z,RA,SA,TA 2 1 
D,E,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 3 1 
F,I,LA,MA,NA,UA,VA,WA,XA,YA 4 1 
G,J,OA,PA,QA,ZA,AB,BB,CB 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 Z N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 NA N N 
? 4 QA N N 
? 4 TA N N 
? 4 WA N N 
? 4 XA N N 
? 4 YA N N 
? 4 BB N N 
? 4 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 577 A SER 575 1_555 L P24 PNS . A PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? 
covale ? covale2 K C21 SVS . A SVS 698 1_555 R S44 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
covale ? covale3 L S44 PNS . A PNS 991 1_555 Q C21 SVS . B SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? 
covale ? covale4 B OG SER 577 B SER 575 1_555 R P24 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale5 C OG SER 577 C SER 575 1_555 Y P24 PNS . C PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? 
covale ? covale6 X C21 SVS . C SVS 698 1_555 SA S44 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
covale ? covale7 Y S44 PNS . C PNS 991 1_555 RA C21 SVS . H SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
covale ? covale8 D OG SER 577 D SER 575 1_555 BA P24 PNS . D PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale9 AA C21 SVS . D SVS 698 1_555 HA S44 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
covale ? covale10 BA S44 PNS . D PNS 991 1_555 GA C21 SVS . E SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
covale ? covale11 E OG SER 577 E SER 575 1_555 HA P24 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale12 F OG SER 577 F SER 575 1_555 MA P24 PNS . F PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? 
covale ? covale13 LA C21 SVS . F SVS 698 1_555 VA S44 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
covale ? covale14 MA S44 PNS . F PNS 991 1_555 UA C21 SVS . I SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
covale ? covale15 G OG SER 577 G SER 575 1_555 PA P24 PNS . G PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale16 OA C21 SVS . G SVS 698 1_555 AB S44 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale17 PA S44 PNS . G PNS 991 1_555 ZA C21 SVS . J SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
covale ? covale18 H OG SER 577 H SER 575 1_555 SA P24 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale19 I OG SER 577 I SER 575 1_555 VA P24 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale20 J OG SER 577 J SER 575 1_555 AB P24 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RG2 
_atom_sites.fract_transf_matrix[1][1]    0.006228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001911 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009826 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 SVS A 1 698 698 SVS SVS . 
L 3 PNS A 1 991 991 PNS PNS . 
M 4 IOD A 1 616 6 IOD IOD . 
N 4 IOD A 1 617 10 IOD IOD . 
O 4 IOD A 1 618 21 IOD IOD . 
P 4 IOD A 1 619 24 IOD IOD . 
Q 2 SVS B 1 698 698 SVS SVS . 
R 3 PNS B 1 991 991 PNS PNS . 
S 4 IOD B 1 616 1 IOD IOD . 
T 4 IOD B 1 617 11 IOD IOD . 
U 4 IOD B 1 618 17 IOD IOD . 
V 4 IOD B 1 619 20 IOD IOD . 
W 4 IOD B 1 620 22 IOD IOD . 
X 2 SVS C 1 698 698 SVS SVS . 
Y 3 PNS C 1 991 991 PNS PNS . 
Z 4 IOD C 1 616 12 IOD IOD . 
AA 2 SVS D 1 698 698 SVS SVS . 
BA 3 PNS D 1 991 991 PNS PNS . 
CA 4 IOD D 1 616 2 IOD IOD . 
DA 4 IOD D 1 617 13 IOD IOD . 
EA 4 IOD D 1 618 18 IOD IOD . 
FA 4 IOD D 1 619 25 IOD IOD . 
GA 2 SVS E 1 698 698 SVS SVS . 
HA 3 PNS E 1 991 991 PNS PNS . 
IA 4 IOD E 1 616 3 IOD IOD . 
JA 4 IOD E 1 617 7 IOD IOD . 
KA 4 IOD E 1 618 14 IOD IOD . 
LA 2 SVS F 1 698 698 SVS SVS . 
MA 3 PNS F 1 991 991 PNS PNS . 
NA 4 IOD F 1 616 15 IOD IOD . 
OA 2 SVS G 1 698 698 SVS SVS . 
PA 3 PNS G 1 991 991 PNS PNS . 
QA 4 IOD G 1 616 16 IOD IOD . 
RA 2 SVS H 1 698 698 SVS SVS . 
SA 3 PNS H 1 991 991 PNS PNS . 
TA 4 IOD H 1 616 8 IOD IOD . 
UA 2 SVS I 1 698 698 SVS SVS . 
VA 3 PNS I 1 991 991 PNS PNS . 
WA 4 IOD I 1 616 4 IOD IOD . 
XA 4 IOD I 1 617 9 IOD IOD . 
YA 4 IOD I 1 618 23 IOD IOD . 
ZA 2 SVS J 1 698 698 SVS SVS . 
AB 3 PNS J 1 991 991 PNS PNS . 
BB 4 IOD J 1 616 5 IOD IOD . 
CB 4 IOD J 1 617 19 IOD IOD . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         KA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -110.269 
_atom_site.Cartn_y               -92.036 
_atom_site.Cartn_z               26.635 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        114.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           618 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    301 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#