data_3RG2 # _model_server_result.job_id LPLSS-fDsMJxlljalSZ5Bg _model_server_result.datetime_utc '2024-11-28 06:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":698}' # _entry.id 3RG2 # _exptl.entry_id 3RG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.469 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine" _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.06 _cell.angle_gamma 90 _cell.entry_id 3RG2 _cell.length_a 160.575 _cell.length_b 101.771 _cell.length_c 240.678 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 C,H,X,Y,Z,RA,SA,TA 2 1 D,E,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 3 1 F,I,LA,MA,NA,UA,VA,WA,XA,YA 4 1 G,J,OA,PA,QA,ZA,AB,BB,CB 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 Q N N ? 2 X N N ? 2 AA N N ? 2 GA N N ? 2 LA N N ? 2 OA N N ? 2 RA N N ? 2 UA N N ? 2 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 577 A SER 575 1_555 L P24 PNS . A PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale2 K C21 SVS . A SVS 698 1_555 R S44 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? covale ? covale3 L S44 PNS . A PNS 991 1_555 Q C21 SVS . B SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? covale ? covale4 B OG SER 577 B SER 575 1_555 R P24 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale5 C OG SER 577 C SER 575 1_555 Y P24 PNS . C PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale6 X C21 SVS . C SVS 698 1_555 SA S44 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale7 Y S44 PNS . C PNS 991 1_555 RA C21 SVS . H SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale8 D OG SER 577 D SER 575 1_555 BA P24 PNS . D PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale9 AA C21 SVS . D SVS 698 1_555 HA S44 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? covale ? covale10 BA S44 PNS . D PNS 991 1_555 GA C21 SVS . E SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? covale ? covale11 E OG SER 577 E SER 575 1_555 HA P24 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale12 F OG SER 577 F SER 575 1_555 MA P24 PNS . F PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale13 LA C21 SVS . F SVS 698 1_555 VA S44 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? covale ? covale14 MA S44 PNS . F PNS 991 1_555 UA C21 SVS . I SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale15 G OG SER 577 G SER 575 1_555 PA P24 PNS . G PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale16 OA C21 SVS . G SVS 698 1_555 AB S44 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale17 PA S44 PNS . G PNS 991 1_555 ZA C21 SVS . J SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale18 H OG SER 577 H SER 575 1_555 SA P24 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale19 I OG SER 577 I SER 575 1_555 VA P24 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale20 J OG SER 577 J SER 575 1_555 AB P24 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? # _chem_comp.formula 'C18 H22 N6 O6 S' _chem_comp.formula_weight 450.469 _chem_comp.id SVS _chem_comp.mon_nstd_flag . _chem_comp.name "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O2P SVS doub 332 n n N1 C6 SVS sing 333 n y C2 N1 SVS doub 334 n y C2 H2 SVS sing 335 n n N3 C2 SVS sing 336 n y N3 C4 SVS doub 337 n y C4 C5 SVS sing 338 n y C5 C6 SVS doub 339 n y C5 N7 SVS sing 340 n y C6 N6 SVS sing 341 n n N6 HN6 SVS sing 342 n n N6 HN6A SVS sing 343 n n C8 N7 SVS doub 344 n y C8 H8 SVS sing 345 n n N9 C4 SVS sing 346 n y N9 C8 SVS sing 347 n y C1' N9 SVS sing 348 n n C1' O4' SVS sing 349 n n C1' H1' SVS sing 350 n n C14 C19 SVS sing 351 n y O14 C14 SVS sing 352 n n O14 HO14 SVS sing 353 n n C15 C14 SVS doub 354 n y C15 C16 SVS sing 355 n y C15 H15 SVS sing 356 n n C16 C17 SVS doub 357 n y C16 H16 SVS sing 358 n n C17 C18 SVS sing 359 n y C17 H17 SVS sing 360 n n C18 H18 SVS sing 361 n n C19 C18 SVS doub 362 n y C19 C21 SVS sing 363 n n O1P S SVS doub 364 n n C2' C1' SVS sing 365 n n C2' H2' SVS sing 366 n n O2' C2' SVS sing 367 n n O2' HO2' SVS sing 368 n n C21 H21 SVS sing 369 n n C22 S SVS sing 370 n n C22 C21 SVS sing 371 n n C22 H22 SVS sing 372 n n C3' C2' SVS sing 373 n n C3' C4' SVS sing 374 n n C3' H3' SVS sing 375 n n O3' C3' SVS sing 376 n n O3' HO3' SVS sing 377 n n C4' C5' SVS sing 378 n n C4' O4' SVS sing 379 n n C4' H4' SVS sing 380 n n C5' N5' SVS sing 381 n n C5' H5' SVS sing 382 n n C5' "H5'A" SVS sing 383 n n N5' S SVS sing 384 n n N5' HN5' SVS sing 385 n n C21 H211 SVS sing 386 n n C22 H221 SVS sing 387 n n # _atom_sites.entry_id 3RG2 _atom_sites.fract_transf_matrix[1][1] 0.006228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 SVS A 1 698 698 SVS SVS . L 3 PNS A 1 991 991 PNS PNS . M 4 IOD A 1 616 6 IOD IOD . N 4 IOD A 1 617 10 IOD IOD . O 4 IOD A 1 618 21 IOD IOD . P 4 IOD A 1 619 24 IOD IOD . Q 2 SVS B 1 698 698 SVS SVS . R 3 PNS B 1 991 991 PNS PNS . S 4 IOD B 1 616 1 IOD IOD . T 4 IOD B 1 617 11 IOD IOD . U 4 IOD B 1 618 17 IOD IOD . V 4 IOD B 1 619 20 IOD IOD . W 4 IOD B 1 620 22 IOD IOD . X 2 SVS C 1 698 698 SVS SVS . Y 3 PNS C 1 991 991 PNS PNS . Z 4 IOD C 1 616 12 IOD IOD . AA 2 SVS D 1 698 698 SVS SVS . BA 3 PNS D 1 991 991 PNS PNS . CA 4 IOD D 1 616 2 IOD IOD . DA 4 IOD D 1 617 13 IOD IOD . EA 4 IOD D 1 618 18 IOD IOD . FA 4 IOD D 1 619 25 IOD IOD . GA 2 SVS E 1 698 698 SVS SVS . HA 3 PNS E 1 991 991 PNS PNS . IA 4 IOD E 1 616 3 IOD IOD . JA 4 IOD E 1 617 7 IOD IOD . KA 4 IOD E 1 618 14 IOD IOD . LA 2 SVS F 1 698 698 SVS SVS . MA 3 PNS F 1 991 991 PNS PNS . NA 4 IOD F 1 616 15 IOD IOD . OA 2 SVS G 1 698 698 SVS SVS . PA 3 PNS G 1 991 991 PNS PNS . QA 4 IOD G 1 616 16 IOD IOD . RA 2 SVS H 1 698 698 SVS SVS . SA 3 PNS H 1 991 991 PNS PNS . TA 4 IOD H 1 616 8 IOD IOD . UA 2 SVS I 1 698 698 SVS SVS . VA 3 PNS I 1 991 991 PNS PNS . WA 4 IOD I 1 616 4 IOD IOD . XA 4 IOD I 1 617 9 IOD IOD . YA 4 IOD I 1 618 23 IOD IOD . ZA 2 SVS J 1 698 698 SVS SVS . AB 3 PNS J 1 991 991 PNS PNS . BB 4 IOD J 1 616 5 IOD IOD . CB 4 IOD J 1 617 19 IOD IOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SVS . . . OA 2 -42.496 -87.998 50.982 1 132.41 ? S SVS 698 G 1 HETATM 2 N N1 SVS . . . OA 2 -34.149 -87.845 45.702 1 128.22 ? N1 SVS 698 G 1 HETATM 3 C C2 SVS . . . OA 2 -35.061 -87.213 44.943 1 123.47 ? C2 SVS 698 G 1 HETATM 4 N N3 SVS . . . OA 2 -36.368 -87.274 45.244 1 131.01 ? N3 SVS 698 G 1 HETATM 5 C C4 SVS . . . OA 2 -36.797 -87.996 46.319 1 130.95 ? C4 SVS 698 G 1 HETATM 6 C C5 SVS . . . OA 2 -35.868 -88.659 47.103 1 109.57 ? C5 SVS 698 G 1 HETATM 7 C C6 SVS . . . OA 2 -34.532 -88.571 46.779 1 101.71 ? C6 SVS 698 G 1 HETATM 8 N N6 SVS . . . OA 2 -33.636 -89.217 47.549 1 104.95 ? N6 SVS 698 G 1 HETATM 9 N N7 SVS . . . OA 2 -36.529 -89.281 48.095 1 118 ? N7 SVS 698 G 1 HETATM 10 C C8 SVS . . . OA 2 -37.844 -89.025 47.932 1 120.86 ? C8 SVS 698 G 1 HETATM 11 N N9 SVS . . . OA 2 -38.003 -88.243 46.854 1 123.63 ? N9 SVS 698 G 1 HETATM 12 C C1' SVS . . . OA 2 -39.313 -87.749 46.372 1 107.27 ? C1' SVS 698 G 1 HETATM 13 C C14 SVS . . . OA 2 -39.595 -90.591 53.64 1 93.94 ? C14 SVS 698 G 1 HETATM 14 O O14 SVS . . . OA 2 -40.85 -91.028 53.94 1 85.8 ? O14 SVS 698 G 1 HETATM 15 C C15 SVS . . . OA 2 -38.526 -91.445 53.935 1 102.18 ? C15 SVS 698 G 1 HETATM 16 C C16 SVS . . . OA 2 -37.21 -91.07 53.686 1 94.87 ? C16 SVS 698 G 1 HETATM 17 C C17 SVS . . . OA 2 -36.968 -89.822 53.123 1 116.21 ? C17 SVS 698 G 1 HETATM 18 C C18 SVS . . . OA 2 -38.034 -88.965 52.824 1 123.53 ? C18 SVS 698 G 1 HETATM 19 C C19 SVS . . . OA 2 -39.365 -89.328 53.075 1 106.71 ? C19 SVS 698 G 1 HETATM 20 O O1P SVS . . . OA 2 -43.779 -88.634 50.766 1 82.61 ? O1P SVS 698 G 1 HETATM 21 C C2' SVS . . . OA 2 -40.004 -88.741 45.461 1 97.2 ? C2' SVS 698 G 1 HETATM 22 O O2' SVS . . . OA 2 -40.765 -87.97 44.529 1 126.16 ? O2' SVS 698 G 1 HETATM 23 C C21 SVS . . . OA 2 -40.478 -88.324 52.738 1 119.6 ? C21 SVS 698 G 1 HETATM 24 C C22 SVS . . . OA 2 -41.647 -88.997 52.02 1 138.77 ? C22 SVS 698 G 1 HETATM 25 O O2P SVS . . . OA 2 -42.64 -86.651 51.48 1 134.32 ? O2P SVS 698 G 1 HETATM 26 C C3' SVS . . . OA 2 -40.965 -89.504 46.345 1 91.51 ? C3' SVS 698 G 1 HETATM 27 O O3' SVS . . . OA 2 -42.153 -89.919 45.641 1 75.72 ? O3' SVS 698 G 1 HETATM 28 C C4' SVS . . . OA 2 -41.279 -88.469 47.402 1 102.42 ? C4' SVS 698 G 1 HETATM 29 O O4' SVS . . . OA 2 -40.14 -87.617 47.52 1 116.83 ? O4' SVS 698 G 1 HETATM 30 C C5' SVS . . . OA 2 -41.557 -89.041 48.774 1 99.9 ? C5' SVS 698 G 1 HETATM 31 N N5' SVS . . . OA 2 -41.692 -87.87 49.616 1 73.56 ? N5' SVS 698 G 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #