data_3RG2 # _model_server_result.job_id At_P04oHIqu9NiwzCESJlA _model_server_result.datetime_utc '2024-11-14 09:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":991}' # _entry.id 3RG2 # _exptl.entry_id 3RG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.06 _cell.angle_gamma 90 _cell.entry_id 3RG2 _cell.length_a 160.575 _cell.length_b 101.771 _cell.length_c 240.678 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 C,H,X,Y,Z,RA,SA,TA 2 1 D,E,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 3 1 F,I,LA,MA,NA,UA,VA,WA,XA,YA 4 1 G,J,OA,PA,QA,ZA,AB,BB,CB 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 R N N ? 3 Y N N ? 3 BA N N ? 3 HA N N ? 3 MA N N ? 3 PA N N ? 3 SA N N ? 3 VA N N ? 3 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 577 A SER 575 1_555 L P24 PNS . A PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale2 K C21 SVS . A SVS 698 1_555 R S44 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? covale ? covale3 L S44 PNS . A PNS 991 1_555 Q C21 SVS . B SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? covale ? covale4 B OG SER 577 B SER 575 1_555 R P24 PNS . B PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale5 C OG SER 577 C SER 575 1_555 Y P24 PNS . C PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale6 X C21 SVS . C SVS 698 1_555 SA S44 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale7 Y S44 PNS . C PNS 991 1_555 RA C21 SVS . H SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale8 D OG SER 577 D SER 575 1_555 BA P24 PNS . D PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale9 AA C21 SVS . D SVS 698 1_555 HA S44 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? covale ? covale10 BA S44 PNS . D PNS 991 1_555 GA C21 SVS . E SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? covale ? covale11 E OG SER 577 E SER 575 1_555 HA P24 PNS . E PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale12 F OG SER 577 F SER 575 1_555 MA P24 PNS . F PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale13 LA C21 SVS . F SVS 698 1_555 VA S44 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? covale ? covale14 MA S44 PNS . F PNS 991 1_555 UA C21 SVS . I SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale15 G OG SER 577 G SER 575 1_555 PA P24 PNS . G PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale16 OA C21 SVS . G SVS 698 1_555 AB S44 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale17 PA S44 PNS . G PNS 991 1_555 ZA C21 SVS . J SVS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale18 H OG SER 577 H SER 575 1_555 SA P24 PNS . H PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale19 I OG SER 577 I SER 575 1_555 VA P24 PNS . I PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale20 J OG SER 577 J SER 575 1_555 AB P24 PNS . J PNS 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 258 n n O23 HOP1 PNS sing 259 n n P24 O25 PNS sing 260 n n P24 O26 PNS doub 261 n n P24 O27 PNS sing 262 n n O25 HOP2 PNS sing 263 n n O27 C28 PNS sing 264 n n C28 C29 PNS sing 265 n n C28 H282 PNS sing 266 n n C28 H281 PNS sing 267 n n C29 C30 PNS sing 268 n n C29 C31 PNS sing 269 n n C29 C32 PNS sing 270 n n C30 H303 PNS sing 271 n n C30 H302 PNS sing 272 n n C30 H301 PNS sing 273 n n C31 H313 PNS sing 274 n n C31 H312 PNS sing 275 n n C31 H311 PNS sing 276 n n C32 O33 PNS sing 277 n n C32 C34 PNS sing 278 n n C32 H32 PNS sing 279 n n O33 H33 PNS sing 280 n n C34 O35 PNS doub 281 n n C34 N36 PNS sing 282 n n N36 C37 PNS sing 283 n n N36 H36 PNS sing 284 n n C37 C38 PNS sing 285 n n C37 H372 PNS sing 286 n n C37 H371 PNS sing 287 n n C38 C39 PNS sing 288 n n C38 H382 PNS sing 289 n n C38 H381 PNS sing 290 n n C39 O40 PNS doub 291 n n C39 N41 PNS sing 292 n n N41 C42 PNS sing 293 n n N41 H41 PNS sing 294 n n C42 C43 PNS sing 295 n n C42 H422 PNS sing 296 n n C42 H421 PNS sing 297 n n C43 S44 PNS sing 298 n n C43 H431 PNS sing 299 n n C43 H432 PNS sing 300 n n S44 H44 PNS sing 301 n n # _atom_sites.entry_id 3RG2 _atom_sites.fract_transf_matrix[1][1] 0.006228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 SVS A 1 698 698 SVS SVS . L 3 PNS A 1 991 991 PNS PNS . M 4 IOD A 1 616 6 IOD IOD . N 4 IOD A 1 617 10 IOD IOD . O 4 IOD A 1 618 21 IOD IOD . P 4 IOD A 1 619 24 IOD IOD . Q 2 SVS B 1 698 698 SVS SVS . R 3 PNS B 1 991 991 PNS PNS . S 4 IOD B 1 616 1 IOD IOD . T 4 IOD B 1 617 11 IOD IOD . U 4 IOD B 1 618 17 IOD IOD . V 4 IOD B 1 619 20 IOD IOD . W 4 IOD B 1 620 22 IOD IOD . X 2 SVS C 1 698 698 SVS SVS . Y 3 PNS C 1 991 991 PNS PNS . Z 4 IOD C 1 616 12 IOD IOD . AA 2 SVS D 1 698 698 SVS SVS . BA 3 PNS D 1 991 991 PNS PNS . CA 4 IOD D 1 616 2 IOD IOD . DA 4 IOD D 1 617 13 IOD IOD . EA 4 IOD D 1 618 18 IOD IOD . FA 4 IOD D 1 619 25 IOD IOD . GA 2 SVS E 1 698 698 SVS SVS . HA 3 PNS E 1 991 991 PNS PNS . IA 4 IOD E 1 616 3 IOD IOD . JA 4 IOD E 1 617 7 IOD IOD . KA 4 IOD E 1 618 14 IOD IOD . LA 2 SVS F 1 698 698 SVS SVS . MA 3 PNS F 1 991 991 PNS PNS . NA 4 IOD F 1 616 15 IOD IOD . OA 2 SVS G 1 698 698 SVS SVS . PA 3 PNS G 1 991 991 PNS PNS . QA 4 IOD G 1 616 16 IOD IOD . RA 2 SVS H 1 698 698 SVS SVS . SA 3 PNS H 1 991 991 PNS PNS . TA 4 IOD H 1 616 8 IOD IOD . UA 2 SVS I 1 698 698 SVS SVS . VA 3 PNS I 1 991 991 PNS PNS . WA 4 IOD I 1 616 4 IOD IOD . XA 4 IOD I 1 617 9 IOD IOD . YA 4 IOD I 1 618 23 IOD IOD . ZA 2 SVS J 1 698 698 SVS SVS . AB 3 PNS J 1 991 991 PNS PNS . BB 4 IOD J 1 616 5 IOD IOD . CB 4 IOD J 1 617 19 IOD IOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . MA 3 -140.218 -32.638 14.449 1 99.24 ? O23 PNS 991 F 1 HETATM 2 P P24 PNS . . . MA 3 -140.207 -31.549 13.382 1 84.97 ? P24 PNS 991 F 1 HETATM 3 O O26 PNS . . . MA 3 -141.492 -31.401 12.591 1 40.92 ? O26 PNS 991 F 1 HETATM 4 O O27 PNS . . . MA 3 -140.013 -30.11 14.115 1 109.76 ? O27 PNS 991 F 1 HETATM 5 C C28 PNS . . . MA 3 -138.759 -29.59 14.569 1 109.35 ? C28 PNS 991 F 1 HETATM 6 C C29 PNS . . . MA 3 -138.983 -28.3 15.36 1 92.46 ? C29 PNS 991 F 1 HETATM 7 C C30 PNS . . . MA 3 -138.838 -27.086 14.449 1 76.27 ? C30 PNS 991 F 1 HETATM 8 C C31 PNS . . . MA 3 -137.932 -28.198 16.463 1 80.46 ? C31 PNS 991 F 1 HETATM 9 C C32 PNS . . . MA 3 -140.406 -28.391 15.92 1 104.39 ? C32 PNS 991 F 1 HETATM 10 O O33 PNS . . . MA 3 -140.532 -29.542 16.771 1 117.82 ? O33 PNS 991 F 1 HETATM 11 C C34 PNS . . . MA 3 -140.878 -27.098 16.558 1 95.86 ? C34 PNS 991 F 1 HETATM 12 O O35 PNS . . . MA 3 -141.604 -26.382 15.893 1 107.14 ? O35 PNS 991 F 1 HETATM 13 N N36 PNS . . . MA 3 -140.539 -26.746 17.806 1 80.56 ? N36 PNS 991 F 1 HETATM 14 C C37 PNS . . . MA 3 -140.93 -25.5 18.496 1 95.24 ? C37 PNS 991 F 1 HETATM 15 C C38 PNS . . . MA 3 -141.95 -25.743 19.625 1 100.68 ? C38 PNS 991 F 1 HETATM 16 C C39 PNS . . . MA 3 -142.064 -24.55 20.567 1 74.97 ? C39 PNS 991 F 1 HETATM 17 O O40 PNS . . . MA 3 -142.713 -23.551 20.263 1 69.41 ? O40 PNS 991 F 1 HETATM 18 N N41 PNS . . . MA 3 -141.447 -24.655 21.744 1 68.68 ? N41 PNS 991 F 1 HETATM 19 C C42 PNS . . . MA 3 -141.392 -23.634 22.782 1 66.71 ? C42 PNS 991 F 1 HETATM 20 C C43 PNS . . . MA 3 -141.567 -24.274 24.157 1 75.11 ? C43 PNS 991 F 1 HETATM 21 S S44 PNS . . . MA 3 -142.971 -23.453 24.983 1 142.26 ? S44 PNS 991 F 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #