data_3RGB # _model_server_result.job_id 7-hLeRJDqqGDHrKJTWJraA _model_server_result.datetime_utc '2024-12-01 09:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":416}' # _entry.id 3RGB # _exptl.entry_id 3RGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.092 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DINUCLEAR COPPER ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RGB _cell.length_a 264.14 _cell.length_b 264.14 _cell.length_c 150.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 Q N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 33 A HIS 33 1_555 L CU2 CUA . A CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A ND1 HIS 33 A HIS 33 1_555 L CU1 CUA . A CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 A ND1 HIS 48 A HIS 48 1_555 J CU CU . A CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc4 A OE1 GLU 57 A GLU 57 1_555 K ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 K ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc6 A ND1 HIS 72 A HIS 72 1_555 J CU CU . A CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc7 A ND1 HIS 137 A HIS 137 1_555 L CU2 CUA . A CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 A NE2 HIS 139 A HIS 139 1_555 L CU2 CUA . A CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 C OD2 ASP 156 C ASP 156 1_555 N ZN ZN . C ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc10 C OD1 ASP 156 C ASP 156 1_555 N ZN ZN . C ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc11 C NE2 HIS 160 C HIS 160 1_555 N ZN ZN . C ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc12 C NE2 HIS 173 C HIS 173 1_555 N ZN ZN . C ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc13 D ND1 HIS 33 E HIS 33 1_555 Q CU1 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? metalc ? metalc14 D N HIS 33 E HIS 33 1_555 Q CU1 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc15 D ND1 HIS 48 E HIS 48 1_555 O CU CU . E CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 D ND1 HIS 72 E HIS 72 1_555 O CU CU . E CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc17 D ND1 HIS 137 E HIS 137 1_555 Q CU2 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc18 D NE2 HIS 137 E HIS 137 1_555 Q CU2 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc19 D NE2 HIS 139 E HIS 139 1_555 Q CU1 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc20 D NE2 HIS 139 E HIS 139 1_555 Q CU2 CUA . E CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc21 E N HIS 33 I HIS 33 1_555 T CU1 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc22 E ND1 HIS 33 I HIS 33 1_555 T CU1 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc23 E ND1 HIS 33 I HIS 33 1_555 T CU2 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc24 E ND1 HIS 48 I HIS 48 1_555 R CU CU . I CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc25 E ND1 HIS 72 I HIS 72 1_555 R CU CU . I CU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc26 E ND1 HIS 137 I HIS 137 1_555 T CU2 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc27 E NE2 HIS 139 I HIS 139 1_555 T CU1 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc28 E NE2 HIS 139 I HIS 139 1_555 T CU2 CUA . I CUA 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc29 F NE2 HIS 11 J HIS 11 1_555 U ZN ZN . J ZN 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc30 G NE2 HIS 11 F HIS 11 1_555 V ZN ZN . F ZN 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc31 V ZN ZN . F ZN 664 1_555 I OE1 GLU 284 G GLU 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc32 H OD2 ASP 156 K ASP 156 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc33 H NE2 HIS 160 K HIS 160 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc34 H NE2 HIS 173 K HIS 173 1_555 W ZN ZN . K ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc35 I OD2 ASP 156 G ASP 156 1_555 X ZN ZN . G ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc36 I OD1 ASP 156 G ASP 156 1_555 X ZN ZN . G ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc37 I NE2 HIS 160 G HIS 160 1_555 X ZN ZN . G ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc38 I NE2 HIS 173 G HIS 173 1_555 X ZN ZN . G ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc39 AA O HOH . G HOH 290 1_555 X ZN ZN . G ZN 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula Cu2 _chem_comp.formula_weight 127.092 _chem_comp.id CUA _chem_comp.mon_nstd_flag . _chem_comp.name 'DINUCLEAR COPPER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 CU1 _chem_comp_bond.atom_id_2 CU2 _chem_comp_bond.comp_id CUA _chem_comp_bond.value_order sing _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3RGB _atom_sites.fract_transf_matrix[1][1] 0.003786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CU A 1 415 4 CU CU . K 5 ZN A 1 800 800 ZN ZN . L 6 CUA A 1 416 3 CUA CUA . M 5 ZN B 1 664 664 ZN ZN . N 5 ZN C 1 663 663 ZN ZN . O 4 CU E 1 415 4 CU CU . P 5 ZN E 1 800 800 ZN ZN . Q 6 CUA E 1 416 3 CUA CUA . R 4 CU I 1 415 4 CU CU . S 5 ZN I 1 800 800 ZN ZN . T 6 CUA I 1 416 3 CUA CUA . U 5 ZN J 1 664 664 ZN ZN . V 5 ZN F 1 664 664 ZN ZN . W 5 ZN K 1 663 663 ZN ZN . X 5 ZN G 1 663 663 ZN ZN . Y 7 HOH C 1 290 1 HOH HOH . Z 7 HOH K 1 290 2 HOH HOH . AA 7 HOH G 1 290 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CU CU1 CUA . . . L 6 37.815 128.528 82.467 1 91.53 ? CU1 CUA 416 A 1 HETATM 2 CU CU2 CUA . . . L 6 36.217 130.513 83.2 1 76.27 ? CU2 CUA 416 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 2 #