data_3RGF
#
_model_server_result.job_id            RyFKCZ_eklI01UxxDC5FMg 
_model_server_result.datetime_utc      '2025-02-18 15:20:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rgf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":465}' 
#
_entry.id    3RGF 
#
_exptl.entry_id    3RGF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.825 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.31 
_cell.angle_gamma         90 
_cell.entry_id            3RGF 
_cell.length_a            70.69 
_cell.length_b            70.61 
_cell.length_c            79.14 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H16 Cl F3 N4 O3' 
_chem_comp.formula_weight    464.825 
_chem_comp.id                BAX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Sorafenib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BAX doub 70 n y 
C1 C6 BAX sing 71 n y 
C1 H1 BAX sing 72 n n 
C2 C3 BAX sing 73 n y 
C2 N12 BAX sing 74 n n 
C3 C4 BAX doub 75 n y 
C3 H3 BAX sing 76 n n 
C4 C5 BAX sing 77 n y 
C4 H4 BAX sing 78 n n 
C13 N12 BAX sing 79 n n 
C13 N14 BAX sing 80 n n 
C13 O15 BAX doub 81 n n 
C16 C17 BAX doub 82 n y 
C16 C21 BAX sing 83 n y 
C16 N14 BAX sing 84 n n 
C17 C18 BAX sing 85 n y 
C17 H17 BAX sing 86 n n 
C18 C19 BAX doub 87 n y 
C18 H18 BAX sing 88 n n 
C19 C20 BAX sing 89 n y 
C19 O22 BAX sing 90 n n 
C20 C21 BAX doub 91 n y 
C20 H20 BAX sing 92 n n 
C21 H21 BAX sing 93 n n 
O22 C23 BAX sing 94 n n 
C24 C25 BAX doub 95 n y 
C24 C23 BAX sing 96 n y 
C24 H24 BAX sing 97 n n 
C25 N26 BAX sing 98 n y 
C25 H25 BAX sing 99 n n 
C27 C28 BAX sing 100 n y 
C27 N26 BAX doub 101 n y 
C27 C29 BAX sing 102 n n 
C28 C23 BAX doub 103 n y 
C28 H28 BAX sing 104 n n 
N30 C31 BAX sing 105 n n 
N30 C29 BAX sing 106 n n 
N30 H30 BAX sing 107 n n 
C31 H311 BAX sing 108 n n 
C31 H312 BAX sing 109 n n 
C31 H313 BAX sing 110 n n 
C5 C6 BAX doub 111 n y 
C5 CL11 BAX sing 112 n n 
C6 C7 BAX sing 113 n n 
C7 F8 BAX sing 114 n n 
C7 F9 BAX sing 115 n n 
C7 F10 BAX sing 116 n n 
N12 H12 BAX sing 117 n n 
N14 H14 BAX sing 118 n n 
C29 O32 BAX doub 119 n n 
#
_atom_sites.entry_id                     3RGF 
_atom_sites.fract_transf_matrix[1][1]    0.014146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004681 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014162 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01331 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BAX A 1 465 1 BAX BAX . 
D 4 EDO A 1 466 3 EDO EDO . 
E 4 EDO A 1 467 6 EDO EDO . 
F 4 EDO A 1 468 9 EDO EDO . 
G 4 EDO A 1 469 10 EDO EDO . 
H 4 EDO B 1 284 1 EDO EDO . 
I 4 EDO B 1 285 2 EDO EDO . 
J 5 GOL B 1 286 4 GOL GOL . 
K 4 EDO B 1 287 5 EDO EDO . 
L 4 EDO B 1 288 7 EDO EDO . 
M 4 EDO B 1 289 8 EDO EDO . 
N 4 EDO B 1 290 11 EDO EDO . 
O 4 EDO B 1 291 13 EDO EDO . 
P 6 HOH A 1 470 1 HOH HOH . 
P 6 HOH A 2 471 2 HOH HOH . 
P 6 HOH A 3 472 3 HOH HOH . 
P 6 HOH A 4 473 4 HOH HOH . 
P 6 HOH A 5 474 5 HOH HOH . 
P 6 HOH A 6 475 6 HOH HOH . 
P 6 HOH A 7 476 13 HOH HOH . 
P 6 HOH A 8 477 14 HOH HOH . 
P 6 HOH A 9 478 19 HOH HOH . 
P 6 HOH A 10 479 24 HOH HOH . 
P 6 HOH A 11 480 25 HOH HOH . 
P 6 HOH A 12 481 29 HOH HOH . 
P 6 HOH A 13 482 34 HOH HOH . 
P 6 HOH A 14 483 35 HOH HOH . 
P 6 HOH A 15 484 36 HOH HOH . 
P 6 HOH A 16 485 37 HOH HOH . 
P 6 HOH A 17 486 38 HOH HOH . 
P 6 HOH A 18 487 40 HOH HOH . 
P 6 HOH A 19 488 41 HOH HOH . 
P 6 HOH A 20 489 42 HOH HOH . 
P 6 HOH A 21 490 43 HOH HOH . 
P 6 HOH A 22 491 44 HOH HOH . 
P 6 HOH A 23 492 45 HOH HOH . 
P 6 HOH A 24 493 52 HOH HOH . 
P 6 HOH A 25 494 53 HOH HOH . 
P 6 HOH A 26 495 54 HOH HOH . 
P 6 HOH A 27 496 55 HOH HOH . 
P 6 HOH A 28 497 57 HOH HOH . 
P 6 HOH A 29 498 64 HOH HOH . 
P 6 HOH A 30 499 65 HOH HOH . 
P 6 HOH A 31 500 67 HOH HOH . 
P 6 HOH A 32 501 68 HOH HOH . 
P 6 HOH A 33 502 69 HOH HOH . 
P 6 HOH A 34 503 70 HOH HOH . 
P 6 HOH A 35 504 71 HOH HOH . 
P 6 HOH A 36 505 72 HOH HOH . 
P 6 HOH A 37 506 79 HOH HOH . 
P 6 HOH A 38 507 80 HOH HOH . 
P 6 HOH A 39 508 81 HOH HOH . 
P 6 HOH A 40 509 82 HOH HOH . 
P 6 HOH A 41 510 83 HOH HOH . 
P 6 HOH A 42 511 84 HOH HOH . 
P 6 HOH A 43 512 87 HOH HOH . 
P 6 HOH A 44 513 88 HOH HOH . 
P 6 HOH A 45 514 89 HOH HOH . 
P 6 HOH A 46 515 90 HOH HOH . 
P 6 HOH A 47 516 91 HOH HOH . 
P 6 HOH A 48 517 92 HOH HOH . 
P 6 HOH A 49 518 93 HOH HOH . 
P 6 HOH A 50 519 101 HOH HOH . 
P 6 HOH A 51 520 103 HOH HOH . 
P 6 HOH A 52 521 104 HOH HOH . 
P 6 HOH A 53 522 106 HOH HOH . 
P 6 HOH A 54 523 109 HOH HOH . 
P 6 HOH A 55 524 110 HOH HOH . 
P 6 HOH A 56 525 111 HOH HOH . 
P 6 HOH A 57 526 112 HOH HOH . 
P 6 HOH A 58 527 113 HOH HOH . 
P 6 HOH A 59 528 114 HOH HOH . 
P 6 HOH A 60 529 118 HOH HOH . 
P 6 HOH A 61 530 123 HOH HOH . 
P 6 HOH A 62 531 124 HOH HOH . 
P 6 HOH A 63 532 125 HOH HOH . 
P 6 HOH A 64 533 126 HOH HOH . 
P 6 HOH A 65 534 127 HOH HOH . 
P 6 HOH A 66 535 129 HOH HOH . 
P 6 HOH A 67 536 130 HOH HOH . 
P 6 HOH A 68 537 131 HOH HOH . 
P 6 HOH A 69 538 132 HOH HOH . 
P 6 HOH A 70 539 134 HOH HOH . 
P 6 HOH A 71 540 136 HOH HOH . 
P 6 HOH A 72 541 137 HOH HOH . 
P 6 HOH A 73 542 138 HOH HOH . 
P 6 HOH A 74 543 139 HOH HOH . 
P 6 HOH A 75 544 140 HOH HOH . 
P 6 HOH A 76 545 141 HOH HOH . 
P 6 HOH A 77 546 142 HOH HOH . 
P 6 HOH A 78 547 143 HOH HOH . 
P 6 HOH A 79 548 147 HOH HOH . 
P 6 HOH A 80 549 148 HOH HOH . 
P 6 HOH A 81 550 149 HOH HOH . 
P 6 HOH A 82 551 152 HOH HOH . 
P 6 HOH A 83 552 155 HOH HOH . 
P 6 HOH A 84 553 156 HOH HOH . 
P 6 HOH A 85 554 157 HOH HOH . 
P 6 HOH A 86 555 158 HOH HOH . 
P 6 HOH A 87 556 159 HOH HOH . 
P 6 HOH A 88 557 160 HOH HOH . 
P 6 HOH A 89 558 165 HOH HOH . 
P 6 HOH A 90 559 173 HOH HOH . 
Q 6 HOH B 1 292 7 HOH HOH . 
Q 6 HOH B 2 293 8 HOH HOH . 
Q 6 HOH B 3 294 9 HOH HOH . 
Q 6 HOH B 4 295 10 HOH HOH . 
Q 6 HOH B 5 296 11 HOH HOH . 
Q 6 HOH B 6 297 12 HOH HOH . 
Q 6 HOH B 7 298 15 HOH HOH . 
Q 6 HOH B 8 299 16 HOH HOH . 
Q 6 HOH B 9 300 17 HOH HOH . 
Q 6 HOH B 10 301 18 HOH HOH . 
Q 6 HOH B 11 302 20 HOH HOH . 
Q 6 HOH B 12 303 21 HOH HOH . 
Q 6 HOH B 13 304 22 HOH HOH . 
Q 6 HOH B 14 305 23 HOH HOH . 
Q 6 HOH B 15 306 26 HOH HOH . 
Q 6 HOH B 16 307 27 HOH HOH . 
Q 6 HOH B 17 308 28 HOH HOH . 
Q 6 HOH B 18 309 30 HOH HOH . 
Q 6 HOH B 19 310 31 HOH HOH . 
Q 6 HOH B 20 311 32 HOH HOH . 
Q 6 HOH B 21 312 33 HOH HOH . 
Q 6 HOH B 22 313 39 HOH HOH . 
Q 6 HOH B 23 314 46 HOH HOH . 
Q 6 HOH B 24 315 47 HOH HOH . 
Q 6 HOH B 25 316 48 HOH HOH . 
Q 6 HOH B 26 317 49 HOH HOH . 
Q 6 HOH B 27 318 50 HOH HOH . 
Q 6 HOH B 28 319 51 HOH HOH . 
Q 6 HOH B 29 320 56 HOH HOH . 
Q 6 HOH B 30 321 58 HOH HOH . 
Q 6 HOH B 31 322 59 HOH HOH . 
Q 6 HOH B 32 323 60 HOH HOH . 
Q 6 HOH B 33 324 61 HOH HOH . 
Q 6 HOH B 34 325 62 HOH HOH . 
Q 6 HOH B 35 326 63 HOH HOH . 
Q 6 HOH B 36 327 66 HOH HOH . 
Q 6 HOH B 37 328 73 HOH HOH . 
Q 6 HOH B 38 329 74 HOH HOH . 
Q 6 HOH B 39 330 75 HOH HOH . 
Q 6 HOH B 40 331 76 HOH HOH . 
Q 6 HOH B 41 332 77 HOH HOH . 
Q 6 HOH B 42 333 78 HOH HOH . 
Q 6 HOH B 43 334 85 HOH HOH . 
Q 6 HOH B 44 335 86 HOH HOH . 
Q 6 HOH B 45 336 94 HOH HOH . 
Q 6 HOH B 46 337 95 HOH HOH . 
Q 6 HOH B 47 338 96 HOH HOH . 
Q 6 HOH B 48 339 97 HOH HOH . 
Q 6 HOH B 49 340 98 HOH HOH . 
Q 6 HOH B 50 341 99 HOH HOH . 
Q 6 HOH B 51 342 100 HOH HOH . 
Q 6 HOH B 52 343 102 HOH HOH . 
Q 6 HOH B 53 344 105 HOH HOH . 
Q 6 HOH B 54 345 107 HOH HOH . 
Q 6 HOH B 55 346 108 HOH HOH . 
Q 6 HOH B 56 347 115 HOH HOH . 
Q 6 HOH B 57 348 116 HOH HOH . 
Q 6 HOH B 58 349 117 HOH HOH . 
Q 6 HOH B 59 350 119 HOH HOH . 
Q 6 HOH B 60 351 120 HOH HOH . 
Q 6 HOH B 61 352 121 HOH HOH . 
Q 6 HOH B 62 353 122 HOH HOH . 
Q 6 HOH B 63 354 128 HOH HOH . 
Q 6 HOH B 64 355 133 HOH HOH . 
Q 6 HOH B 65 356 135 HOH HOH . 
Q 6 HOH B 66 357 144 HOH HOH . 
Q 6 HOH B 67 358 145 HOH HOH . 
Q 6 HOH B 68 359 146 HOH HOH . 
Q 6 HOH B 69 360 150 HOH HOH . 
Q 6 HOH B 70 361 151 HOH HOH . 
Q 6 HOH B 71 362 153 HOH HOH . 
Q 6 HOH B 72 363 154 HOH HOH . 
Q 6 HOH B 73 364 161 HOH HOH . 
Q 6 HOH B 74 365 162 HOH HOH . 
Q 6 HOH B 75 366 163 HOH HOH . 
Q 6 HOH B 76 367 164 HOH HOH . 
Q 6 HOH B 77 368 166 HOH HOH . 
Q 6 HOH B 78 369 167 HOH HOH . 
Q 6 HOH B 79 370 168 HOH HOH . 
Q 6 HOH B 80 371 169 HOH HOH . 
Q 6 HOH B 81 372 170 HOH HOH . 
Q 6 HOH B 82 373 171 HOH HOH . 
Q 6 HOH B 83 374 172 HOH HOH . 
Q 6 HOH B 84 376 174 HOH HOH . 
Q 6 HOH B 85 377 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BAX . . . C 3 -3.479 3.317 22.868 1 40.55 ? C1 BAX 465 A 1 
HETATM 2 C C2 BAX . . . C 3 -4.004 4.602 22.97 1 33.62 ? C2 BAX 465 A 1 
HETATM 3 C C3 BAX . . . C 3 -3.696 5.545 22.001 1 36.59 ? C3 BAX 465 A 1 
HETATM 4 C C4 BAX . . . C 3 -2.871 5.22 20.944 1 36.07 ? C4 BAX 465 A 1 
HETATM 5 C C13 BAX . . . C 3 -4.966 4.41 25.294 1 32.07 ? C13 BAX 465 A 1 
HETATM 6 C C16 BAX . . . C 3 -6.176 4.577 27.475 1 33.31 ? C16 BAX 465 A 1 
HETATM 7 C C17 BAX . . . C 3 -6.617 5.542 28.366 1 34.96 ? C17 BAX 465 A 1 
HETATM 8 C C18 BAX . . . C 3 -6.925 5.206 29.671 1 35.4 ? C18 BAX 465 A 1 
HETATM 9 C C19 BAX . . . C 3 -6.787 3.893 30.096 1 41.04 ? C19 BAX 465 A 1 
HETATM 10 C C20 BAX . . . C 3 -6.346 2.919 29.207 1 36.26 ? C20 BAX 465 A 1 
HETATM 11 C C21 BAX . . . C 3 -6.049 3.263 27.902 1 37.16 ? C21 BAX 465 A 1 
HETATM 12 O O22 BAX . . . C 3 -7.1 3.609 31.39 1 39.2 ? O22 BAX 465 A 1 
HETATM 13 C C24 BAX . . . C 3 -7.965 1.355 31.541 1 38.64 ? C24 BAX 465 A 1 
HETATM 14 C C25 BAX . . . C 3 -8.009 0.159 32.241 1 39.14 ? C25 BAX 465 A 1 
HETATM 15 C C27 BAX . . . C 3 -6.495 1.063 33.886 1 47.73 ? C27 BAX 465 A 1 
HETATM 16 C C28 BAX . . . C 3 -6.458 2.255 33.185 1 42.39 ? C28 BAX 465 A 1 
HETATM 17 N N30 BAX . . . C 3 -5.796 -0.177 35.938 1 56.86 ? N30 BAX 465 A 1 
HETATM 18 C C31 BAX . . . C 3 -5.015 -0.354 37.173 1 60.17 ? C31 BAX 465 A 1 
HETATM 19 C C5 BAX . . . C 3 -2.359 3.935 20.848 1 40.45 ? C5 BAX 465 A 1 
HETATM 20 C C6 BAX . . . C 3 -2.657 2.974 21.801 1 40.51 ? C6 BAX 465 A 1 
HETATM 21 C C7 BAX . . . C 3 -2.063 1.578 21.678 1 40.59 ? C7 BAX 465 A 1 
HETATM 22 F F8 BAX . . . C 3 -2.512 0.72 22.618 1 39.99 ? F8 BAX 465 A 1 
HETATM 23 F F9 BAX . . . C 3 -2.357 1.029 20.487 1 40.31 ? F9 BAX 465 A 1 
HETATM 24 F F10 BAX . . . C 3 -0.718 1.698 21.789 1 41.8 ? F10 BAX 465 A 1 
HETATM 25 CL CL11 BAX . . . C 3 -1.338 3.559 19.525 1 48.55 ? CL11 BAX 465 A 1 
HETATM 26 N N12 BAX . . . C 3 -4.854 4.978 24.037 1 34.98 ? N12 BAX 465 A 1 
HETATM 27 N N14 BAX . . . C 3 -5.889 4.979 26.147 1 33.25 ? N14 BAX 465 A 1 
HETATM 28 O O15 BAX . . . C 3 -4.304 3.46 25.638 1 32.89 ? O15 BAX 465 A 1 
HETATM 29 C C23 BAX . . . C 3 -7.187 2.399 32.019 1 41.51 ? C23 BAX 465 A 1 
HETATM 30 N N26 BAX . . . C 3 -7.269 0.013 33.406 1 43.02 ? N26 BAX 465 A 1 
HETATM 31 C C29 BAX . . . C 3 -5.696 0.936 35.126 1 52.29 ? C29 BAX 465 A 1 
HETATM 32 O O32 BAX . . . C 3 -4.929 1.825 35.422 1 53.65 ? O32 BAX 465 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#