data_3RGM
#
_model_server_result.job_id            ddnvPogPLgwHzOW3koOj4g 
_model_server_result.datetime_utc      '2024-11-27 02:01:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rgm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":604}' 
#
_entry.id    3RGM 
#
_exptl.entry_id    3RGM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RGM 
_cell.length_a            81.629 
_cell.length_b            81.629 
_cell.length_c            227.729 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RGM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             156 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              156 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            Q 
_struct_conn.ptnr2_label_atom_id            S1 
_struct_conn.ptnr2_label_comp_id            MTN 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MTN 
_struct_conn.ptnr2_auth_seq_id              604 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.011 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 291 n n 
N1 C1 MTN sing 292 n n 
N1 C5 MTN sing 293 n n 
C1 C2 MTN sing 294 n n 
C1 C8 MTN sing 295 n n 
C1 C9 MTN sing 296 n n 
C2 C3 MTN doub 297 n n 
C2 H2 MTN sing 298 n n 
C3 C4 MTN sing 299 n n 
C3 C5 MTN sing 300 n n 
C4 S1 MTN sing 301 n n 
C4 H41 MTN sing 302 n n 
C4 H42 MTN sing 303 n n 
C5 C6 MTN sing 304 n n 
C5 C7 MTN sing 305 n n 
C6 H61 MTN sing 306 n n 
C6 H62 MTN sing 307 n n 
C6 H63 MTN sing 308 n n 
C7 H71 MTN sing 309 n n 
C7 H72 MTN sing 310 n n 
C7 H73 MTN sing 311 n n 
C8 H81 MTN sing 312 n n 
C8 H82 MTN sing 313 n n 
C8 H83 MTN sing 314 n n 
C9 H91 MTN sing 315 n n 
C9 H92 MTN sing 316 n n 
C9 H93 MTN sing 317 n n 
S1 S2 MTN sing 318 n n 
S2 O2 MTN doub 319 n n 
S2 O3 MTN doub 320 n n 
S2 C12 MTN sing 321 n n 
C12 H4 MTN sing 322 n n 
C12 H1 MTN sing 323 n n 
C12 H3 MTN sing 324 n n 
#
_atom_sites.entry_id                     3RGM 
_atom_sites.fract_transf_matrix[1][1]    0.012251 
_atom_sites.fract_transf_matrix[1][2]    0.007073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 C8E A 1 800 800 C8E C8E . 
C 2 C8E A 1 801 801 C8E C8E . 
D 2 C8E A 1 802 802 C8E C8E . 
E 2 C8E A 1 803 803 C8E C8E . 
F 2 C8E A 1 804 804 C8E C8E . 
G 2 C8E A 1 805 805 C8E C8E . 
H 3 MG A 1 595 1 MG MG . 
I 3 MG A 1 596 2 MG MG . 
J 3 MG A 1 597 3 MG MG . 
K 3 MG A 1 598 4 MG MG . 
L 3 MG A 1 599 5 MG MG . 
M 3 MG A 1 600 6 MG MG . 
N 3 MG A 1 601 7 MG MG . 
O 3 MG A 1 602 8 MG MG . 
P 3 MG A 1 603 9 MG MG . 
Q 4 MTN A 1 604 156 MTN MTN . 
R 5 HOH A 1 605 1 HOH HOH . 
R 5 HOH A 2 606 2 HOH HOH . 
R 5 HOH A 3 607 3 HOH HOH . 
R 5 HOH A 4 608 6 HOH HOH . 
R 5 HOH A 5 609 7 HOH HOH . 
R 5 HOH A 6 610 8 HOH HOH . 
R 5 HOH A 7 611 9 HOH HOH . 
R 5 HOH A 8 612 11 HOH HOH . 
R 5 HOH A 9 613 12 HOH HOH . 
R 5 HOH A 10 614 14 HOH HOH . 
R 5 HOH A 11 615 15 HOH HOH . 
R 5 HOH A 12 616 16 HOH HOH . 
R 5 HOH A 13 617 17 HOH HOH . 
R 5 HOH A 14 618 19 HOH HOH . 
R 5 HOH A 15 619 20 HOH HOH . 
R 5 HOH A 16 620 21 HOH HOH . 
R 5 HOH A 17 621 23 HOH HOH . 
R 5 HOH A 18 622 24 HOH HOH . 
R 5 HOH A 19 623 25 HOH HOH . 
R 5 HOH A 20 624 27 HOH HOH . 
R 5 HOH A 21 625 28 HOH HOH . 
R 5 HOH A 22 626 29 HOH HOH . 
R 5 HOH A 23 627 30 HOH HOH . 
R 5 HOH A 24 628 31 HOH HOH . 
R 5 HOH A 25 629 32 HOH HOH . 
R 5 HOH A 26 630 33 HOH HOH . 
R 5 HOH A 27 631 35 HOH HOH . 
R 5 HOH A 28 632 36 HOH HOH . 
R 5 HOH A 29 633 37 HOH HOH . 
R 5 HOH A 30 634 40 HOH HOH . 
R 5 HOH A 31 635 41 HOH HOH . 
R 5 HOH A 32 636 42 HOH HOH . 
R 5 HOH A 33 637 44 HOH HOH . 
R 5 HOH A 34 638 45 HOH HOH . 
R 5 HOH A 35 639 46 HOH HOH . 
R 5 HOH A 36 640 49 HOH HOH . 
R 5 HOH A 37 641 50 HOH HOH . 
R 5 HOH A 38 642 52 HOH HOH . 
R 5 HOH A 39 643 55 HOH HOH . 
R 5 HOH A 40 644 57 HOH HOH . 
R 5 HOH A 41 645 60 HOH HOH . 
R 5 HOH A 42 646 61 HOH HOH . 
R 5 HOH A 43 647 63 HOH HOH . 
R 5 HOH A 44 648 64 HOH HOH . 
R 5 HOH A 45 649 65 HOH HOH . 
R 5 HOH A 46 650 70 HOH HOH . 
R 5 HOH A 47 651 71 HOH HOH . 
R 5 HOH A 48 652 74 HOH HOH . 
R 5 HOH A 49 653 75 HOH HOH . 
R 5 HOH A 50 654 79 HOH HOH . 
R 5 HOH A 51 655 81 HOH HOH . 
R 5 HOH A 52 656 82 HOH HOH . 
R 5 HOH A 53 657 84 HOH HOH . 
R 5 HOH A 54 658 85 HOH HOH . 
R 5 HOH A 55 659 87 HOH HOH . 
R 5 HOH A 56 660 91 HOH HOH . 
R 5 HOH A 57 661 96 HOH HOH . 
R 5 HOH A 58 662 100 HOH HOH . 
R 5 HOH A 59 663 101 HOH HOH . 
R 5 HOH A 60 664 102 HOH HOH . 
R 5 HOH A 61 665 103 HOH HOH . 
R 5 HOH A 62 666 104 HOH HOH . 
R 5 HOH A 63 667 109 HOH HOH . 
R 5 HOH A 64 668 112 HOH HOH . 
R 5 HOH A 65 669 121 HOH HOH . 
R 5 HOH A 66 670 125 HOH HOH . 
R 5 HOH A 67 671 128 HOH HOH . 
R 5 HOH A 68 672 142 HOH HOH . 
R 5 HOH A 69 673 145 HOH HOH . 
R 5 HOH A 70 674 162 HOH HOH . 
R 5 HOH A 71 675 164 HOH HOH . 
R 5 HOH A 72 676 165 HOH HOH . 
R 5 HOH A 73 677 167 HOH HOH . 
R 5 HOH A 74 678 170 HOH HOH . 
R 5 HOH A 75 679 174 HOH HOH . 
R 5 HOH A 76 680 175 HOH HOH . 
R 5 HOH A 77 681 186 HOH HOH . 
R 5 HOH A 78 682 190 HOH HOH . 
R 5 HOH A 79 683 191 HOH HOH . 
R 5 HOH A 80 684 204 HOH HOH . 
R 5 HOH A 81 685 206 HOH HOH . 
R 5 HOH A 82 686 207 HOH HOH . 
R 5 HOH A 83 687 208 HOH HOH . 
R 5 HOH A 84 688 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . . . Q 4 34.766 2.026 -19.725 0.6 35.92 ? O1 MTN 604 A 1 
HETATM 2 N N1 MTN . . . Q 4 34.191 1.116 -20.609 0.6 37.39 ? N1 MTN 604 A 1 
HETATM 3 C C1 MTN . . . Q 4 34.061 1.294 -22.042 0.6 37.57 ? C1 MTN 604 A 1 
HETATM 4 C C2 MTN . . . Q 4 33.385 0.022 -22.528 0.6 36.66 ? C2 MTN 604 A 1 
HETATM 5 C C3 MTN . . . Q 4 33.057 -0.726 -21.485 0.6 36.34 ? C3 MTN 604 A 1 
HETATM 6 C C4 MTN . . . Q 4 32.346 -2.08 -21.501 0.6 36.07 ? C4 MTN 604 A 1 
HETATM 7 S S1 MTN . . . Q 4 31.198 -2.289 -22.904 0.6 35.15 ? S1 MTN 604 A 1 
HETATM 8 C C5 MTN . . . Q 4 33.553 -0.085 -20.194 0.6 37.52 ? C5 MTN 604 A 1 
HETATM 9 C C6 MTN . . . Q 4 34.59 -0.918 -19.456 0.6 37.68 ? C6 MTN 604 A 1 
HETATM 10 C C7 MTN . . . Q 4 32.346 0.314 -19.323 0.6 37.62 ? C7 MTN 604 A 1 
HETATM 11 C C8 MTN . . . Q 4 33.106 2.45 -22.338 0.6 37.33 ? C8 MTN 604 A 1 
HETATM 12 C C9 MTN . . . Q 4 35.45 1.534 -22.63 0.6 37.81 ? C9 MTN 604 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           458 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           12 
#