data_3RGN # _model_server_result.job_id jZghHiWJsu9B-IIWRL_ojg _model_server_result.datetime_utc '2025-02-16 22:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":598}' # _entry.id 3RGN # _exptl.entry_id 3RGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RGN _cell.length_a 81.681 _cell.length_b 81.681 _cell.length_c 227.148 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 371 A CYS 371 1_555 L S1 MTN . A MTN 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc1 A OD1 ASP 411 A ASP 411 1_555 K MG MG . A MG 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 291 n n N1 C1 MTN sing 292 n n N1 C5 MTN sing 293 n n C1 C2 MTN sing 294 n n C1 C8 MTN sing 295 n n C1 C9 MTN sing 296 n n C2 C3 MTN doub 297 n n C2 H2 MTN sing 298 n n C3 C4 MTN sing 299 n n C3 C5 MTN sing 300 n n C4 S1 MTN sing 301 n n C4 H41 MTN sing 302 n n C4 H42 MTN sing 303 n n C5 C6 MTN sing 304 n n C5 C7 MTN sing 305 n n C6 H61 MTN sing 306 n n C6 H62 MTN sing 307 n n C6 H63 MTN sing 308 n n C7 H71 MTN sing 309 n n C7 H72 MTN sing 310 n n C7 H73 MTN sing 311 n n C8 H81 MTN sing 312 n n C8 H82 MTN sing 313 n n C8 H83 MTN sing 314 n n C9 H91 MTN sing 315 n n C9 H92 MTN sing 316 n n C9 H93 MTN sing 317 n n S1 S2 MTN sing 318 n n S2 O2 MTN doub 319 n n S2 O3 MTN doub 320 n n S2 C12 MTN sing 321 n n C12 H4 MTN sing 322 n n C12 H1 MTN sing 323 n n C12 H3 MTN sing 324 n n # _atom_sites.entry_id 3RGN _atom_sites.fract_transf_matrix[1][1] 0.012243 _atom_sites.fract_transf_matrix[1][2] 0.007068 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8E A 1 800 800 C8E C8E . C 2 C8E A 1 801 801 C8E C8E . D 2 C8E A 1 802 802 C8E C8E . E 2 C8E A 1 803 803 C8E C8E . F 2 C8E A 1 804 804 C8E C8E . G 2 C8E A 1 805 805 C8E C8E . H 2 C8E A 1 806 806 C8E C8E . I 3 MG A 1 595 1 MG MG . J 3 MG A 1 596 2 MG MG . K 3 MG A 1 597 3 MG MG . L 4 MTN A 1 598 371 MTN MTN . M 5 HOH A 1 599 1 HOH HOH . M 5 HOH A 2 600 2 HOH HOH . M 5 HOH A 3 601 3 HOH HOH . M 5 HOH A 4 602 4 HOH HOH . M 5 HOH A 5 603 6 HOH HOH . M 5 HOH A 6 604 7 HOH HOH . M 5 HOH A 7 605 9 HOH HOH . M 5 HOH A 8 606 11 HOH HOH . M 5 HOH A 9 607 12 HOH HOH . M 5 HOH A 10 608 13 HOH HOH . M 5 HOH A 11 609 17 HOH HOH . M 5 HOH A 12 610 18 HOH HOH . M 5 HOH A 13 611 22 HOH HOH . M 5 HOH A 14 612 23 HOH HOH . M 5 HOH A 15 613 24 HOH HOH . M 5 HOH A 16 614 29 HOH HOH . M 5 HOH A 17 615 32 HOH HOH . M 5 HOH A 18 616 33 HOH HOH . M 5 HOH A 19 617 34 HOH HOH . M 5 HOH A 20 618 36 HOH HOH . M 5 HOH A 21 619 40 HOH HOH . M 5 HOH A 22 620 41 HOH HOH . M 5 HOH A 23 621 42 HOH HOH . M 5 HOH A 24 622 44 HOH HOH . M 5 HOH A 25 623 46 HOH HOH . M 5 HOH A 26 624 47 HOH HOH . M 5 HOH A 27 625 48 HOH HOH . M 5 HOH A 28 626 49 HOH HOH . M 5 HOH A 29 627 51 HOH HOH . M 5 HOH A 30 628 53 HOH HOH . M 5 HOH A 31 629 56 HOH HOH . M 5 HOH A 32 630 58 HOH HOH . M 5 HOH A 33 631 61 HOH HOH . M 5 HOH A 34 632 63 HOH HOH . M 5 HOH A 35 633 64 HOH HOH . M 5 HOH A 36 634 65 HOH HOH . M 5 HOH A 37 635 67 HOH HOH . M 5 HOH A 38 636 68 HOH HOH . M 5 HOH A 39 637 72 HOH HOH . M 5 HOH A 40 638 73 HOH HOH . M 5 HOH A 41 639 75 HOH HOH . M 5 HOH A 42 640 78 HOH HOH . M 5 HOH A 43 641 79 HOH HOH . M 5 HOH A 44 642 84 HOH HOH . M 5 HOH A 45 643 85 HOH HOH . M 5 HOH A 46 644 88 HOH HOH . M 5 HOH A 47 645 90 HOH HOH . M 5 HOH A 48 646 92 HOH HOH . M 5 HOH A 49 647 94 HOH HOH . M 5 HOH A 50 648 98 HOH HOH . M 5 HOH A 51 649 109 HOH HOH . M 5 HOH A 52 650 115 HOH HOH . M 5 HOH A 53 651 125 HOH HOH . M 5 HOH A 54 652 126 HOH HOH . M 5 HOH A 55 653 140 HOH HOH . M 5 HOH A 56 654 143 HOH HOH . M 5 HOH A 57 655 144 HOH HOH . M 5 HOH A 58 656 150 HOH HOH . M 5 HOH A 59 657 154 HOH HOH . M 5 HOH A 60 658 161 HOH HOH . M 5 HOH A 61 659 162 HOH HOH . M 5 HOH A 62 660 165 HOH HOH . M 5 HOH A 63 661 184 HOH HOH . M 5 HOH A 64 662 189 HOH HOH . M 5 HOH A 65 663 212 HOH HOH . M 5 HOH A 66 664 236 HOH HOH . M 5 HOH A 67 665 274 HOH HOH . M 5 HOH A 68 666 275 HOH HOH . M 5 HOH A 69 667 276 HOH HOH . M 5 HOH A 70 668 277 HOH HOH . M 5 HOH A 71 669 278 HOH HOH . M 5 HOH A 72 670 279 HOH HOH . M 5 HOH A 73 671 280 HOH HOH . M 5 HOH A 74 672 285 HOH HOH . M 5 HOH A 75 673 286 HOH HOH . M 5 HOH A 76 674 287 HOH HOH . M 5 HOH A 77 675 288 HOH HOH . M 5 HOH A 78 676 290 HOH HOH . M 5 HOH A 79 677 291 HOH HOH . M 5 HOH A 80 678 294 HOH HOH . M 5 HOH A 81 679 296 HOH HOH . M 5 HOH A 82 680 297 HOH HOH . M 5 HOH A 83 681 299 HOH HOH . M 5 HOH A 84 682 300 HOH HOH . M 5 HOH A 85 683 301 HOH HOH . M 5 HOH A 86 684 302 HOH HOH . M 5 HOH A 87 685 305 HOH HOH . M 5 HOH A 88 686 306 HOH HOH . M 5 HOH A 89 687 307 HOH HOH . M 5 HOH A 90 688 312 HOH HOH . M 5 HOH A 91 689 313 HOH HOH . M 5 HOH A 92 690 317 HOH HOH . M 5 HOH A 93 691 319 HOH HOH . M 5 HOH A 94 692 324 HOH HOH . M 5 HOH A 95 693 327 HOH HOH . M 5 HOH A 96 694 328 HOH HOH . M 5 HOH A 97 695 331 HOH HOH . M 5 HOH A 98 696 332 HOH HOH . M 5 HOH A 99 697 333 HOH HOH . M 5 HOH A 100 698 334 HOH HOH . M 5 HOH A 101 699 335 HOH HOH . M 5 HOH A 102 700 338 HOH HOH . M 5 HOH A 103 701 340 HOH HOH . M 5 HOH A 104 702 342 HOH HOH . M 5 HOH A 105 703 343 HOH HOH . M 5 HOH A 106 704 344 HOH HOH . M 5 HOH A 107 705 345 HOH HOH . M 5 HOH A 108 706 354 HOH HOH . M 5 HOH A 109 707 355 HOH HOH . M 5 HOH A 110 708 356 HOH HOH . M 5 HOH A 111 709 357 HOH HOH . M 5 HOH A 112 710 358 HOH HOH . M 5 HOH A 113 711 359 HOH HOH . M 5 HOH A 114 712 360 HOH HOH . M 5 HOH A 115 713 361 HOH HOH . M 5 HOH A 116 714 363 HOH HOH . M 5 HOH A 117 715 364 HOH HOH . M 5 HOH A 118 716 365 HOH HOH . M 5 HOH A 119 717 366 HOH HOH . M 5 HOH A 120 718 369 HOH HOH . M 5 HOH A 121 719 371 HOH HOH . M 5 HOH A 122 720 376 HOH HOH . M 5 HOH A 123 721 377 HOH HOH . M 5 HOH A 124 722 378 HOH HOH . M 5 HOH A 125 723 382 HOH HOH . M 5 HOH A 126 724 383 HOH HOH . M 5 HOH A 127 725 384 HOH HOH . M 5 HOH A 128 726 385 HOH HOH . M 5 HOH A 129 727 386 HOH HOH . M 5 HOH A 130 728 387 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . L 4 -31.67 51.202 -38.445 0.65 60.48 ? O1 MTN 598 A 1 HETATM 2 N N1 MTN . . . L 4 -31.478 49.85 -38.257 0.65 58.23 ? N1 MTN 598 A 1 HETATM 3 C C1 MTN . . . L 4 -30.669 49.039 -39.14 0.65 59.85 ? C1 MTN 598 A 1 HETATM 4 C C2 MTN . . . L 4 -30.793 47.642 -38.495 0.65 59.22 ? C2 MTN 598 A 1 HETATM 5 C C3 MTN . . . L 4 -31.558 47.655 -37.387 0.65 55.61 ? C3 MTN 598 A 1 HETATM 6 C C4 MTN . . . L 4 -31.976 46.43 -36.542 0.65 51.27 ? C4 MTN 598 A 1 HETATM 7 S S1 MTN . . . L 4 -31.724 46.52 -34.706 0.65 52.57 ? S1 MTN 598 A 1 HETATM 8 C C5 MTN . . . L 4 -32.095 49.057 -37.198 0.65 56.74 ? C5 MTN 598 A 1 HETATM 9 C C6 MTN . . . L 4 -31.718 49.673 -35.861 0.65 54.44 ? C6 MTN 598 A 1 HETATM 10 C C7 MTN . . . L 4 -33.607 48.997 -37.46 0.65 57.88 ? C7 MTN 598 A 1 HETATM 11 C C8 MTN . . . L 4 -31.293 49.047 -40.553 0.65 61.57 ? C8 MTN 598 A 1 HETATM 12 C C9 MTN . . . L 4 -29.215 49.563 -39.196 0.65 60.37 ? C9 MTN 598 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #