data_3RH7 # _model_server_result.job_id TBvfb7laS4wpoiREn6r3qw _model_server_result.datetime_utc '2025-03-05 21:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":321}' # _entry.id 3RH7 # _exptl.entry_id 3RH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RH7 _cell.length_a 91.92 _cell.length_b 99.735 _cell.length_c 234.302 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D,H,I 2 1 E,F,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 10 A GLU 0 1_555 A N MSE 11 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MSE 11 A MSE 1 1_555 A N THR 12 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C SER 75 A SER 65 1_555 A N MSE 76 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 A C MSE 76 A MSE 66 1_555 A N THR 77 A THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 A C SER 131 A SER 121 1_555 A N MSE 132 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C MSE 132 A MSE 122 1_555 A N GLN 133 A GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B C SER 75 B SER 65 1_555 B N MSE 76 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 B C MSE 76 B MSE 66 1_555 B N THR 77 B THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 B C SER 131 B SER 121 1_555 B N MSE 132 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 B C MSE 132 B MSE 122 1_555 B N GLN 133 B GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 C C SER 75 C SER 65 1_555 C N MSE 76 C MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale12 C C MSE 76 C MSE 66 1_555 C N THR 77 C THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale13 C C SER 131 C SER 121 1_555 C N MSE 132 C MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 C C MSE 132 C MSE 122 1_555 C N GLN 133 C GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 D C SER 75 D SER 65 1_555 D N MSE 76 D MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale16 D C MSE 76 D MSE 66 1_555 D N THR 77 D THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale17 D C SER 131 D SER 121 1_555 D N MSE 132 D MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale18 D C MSE 132 D MSE 122 1_555 D N GLN 133 D GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale19 E C GLU 10 E GLU 0 1_555 E N MSE 11 E MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale20 E C MSE 11 E MSE 1 1_555 E N THR 12 E THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale21 E C SER 75 E SER 65 1_555 E N MSE 76 E MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale22 E C MSE 76 E MSE 66 1_555 E N THR 77 E THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale23 E C SER 131 E SER 121 1_555 E N MSE 132 E MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 E C MSE 132 E MSE 122 1_555 E N GLN 133 E GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale25 F C SER 75 F SER 65 1_555 F N MSE 76 F MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale26 F C MSE 76 F MSE 66 1_555 F N THR 77 F THR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale27 F C SER 131 F SER 121 1_555 F N MSE 132 F MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale28 F C MSE 132 F MSE 122 1_555 F N GLN 133 F GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3RH7 _atom_sites.fract_transf_matrix[1][1] 0.010879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 321 321 FMN FMN . H 2 FMN C 1 321 321 FMN FMN . I 2 FMN D 1 321 321 FMN FMN . J 2 FMN F 1 321 321 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 2 30.23 -18.74 111.855 1 143.26 ? N1 FMN 321 F 1 HETATM 2 C C2 FMN . . . J 2 30.858 -17.506 111.9 1 144.86 ? C2 FMN 321 F 1 HETATM 3 O O2 FMN . . . J 2 30.494 -16.671 112.74 1 147.49 ? O2 FMN 321 F 1 HETATM 4 N N3 FMN . . . J 2 31.943 -17.26 111.052 1 143.2 ? N3 FMN 321 F 1 HETATM 5 C C4 FMN . . . J 2 32.436 -18.117 110.069 1 140.71 ? C4 FMN 321 F 1 HETATM 6 O O4 FMN . . . J 2 33.391 -17.896 109.341 1 140.14 ? O4 FMN 321 F 1 HETATM 7 C C4A FMN . . . J 2 31.692 -19.436 109.976 1 138.93 ? C4A FMN 321 F 1 HETATM 8 N N5 FMN . . . J 2 32.086 -20.331 109.084 1 136.75 ? N5 FMN 321 F 1 HETATM 9 C C5A FMN . . . J 2 31.47 -21.6 109.075 1 135.63 ? C5A FMN 321 F 1 HETATM 10 C C6 FMN . . . J 2 31.973 -22.512 108.115 1 133.61 ? C6 FMN 321 F 1 HETATM 11 C C7 FMN . . . J 2 31.48 -23.84 108.049 1 132.79 ? C7 FMN 321 F 1 HETATM 12 C C7M FMN . . . J 2 32.052 -24.786 107.041 1 131.56 ? C7M FMN 321 F 1 HETATM 13 C C8 FMN . . . J 2 30.439 -24.238 108.935 1 134.15 ? C8 FMN 321 F 1 HETATM 14 C C8M FMN . . . J 2 29.879 -25.608 108.897 1 134.49 ? C8M FMN 321 F 1 HETATM 15 C C9 FMN . . . J 2 29.91 -23.317 109.89 1 136.27 ? C9 FMN 321 F 1 HETATM 16 C C9A FMN . . . J 2 30.39 -21.968 110.001 1 137 ? C9A FMN 321 F 1 HETATM 17 N N10 FMN . . . J 2 29.911 -20.988 110.986 1 139.48 ? N10 FMN 321 F 1 HETATM 18 C C10 FMN . . . J 2 30.549 -19.705 111.004 1 140.77 ? C10 FMN 321 F 1 HETATM 19 C C1' FMN . . . J 2 28.798 -21.343 111.959 1 141.29 ? C1' FMN 321 F 1 HETATM 20 C C2' FMN . . . J 2 29.287 -21.363 113.468 1 143.13 ? C2' FMN 321 F 1 HETATM 21 O O2' FMN . . . J 2 30.316 -22.303 113.786 1 141.29 ? O2' FMN 321 F 1 HETATM 22 C C3' FMN . . . J 2 28.238 -21.433 114.623 1 146.1 ? C3' FMN 321 F 1 HETATM 23 O O3' FMN . . . J 2 26.946 -21.932 114.281 1 147.44 ? O3' FMN 321 F 1 HETATM 24 C C4' FMN . . . J 2 28.216 -20.231 115.589 1 149.64 ? C4' FMN 321 F 1 HETATM 25 O O4' FMN . . . J 2 28.623 -18.964 115.026 1 151 ? O4' FMN 321 F 1 HETATM 26 C C5' FMN . . . J 2 29.114 -20.554 116.764 1 150.62 ? C5' FMN 321 F 1 HETATM 27 O O5' FMN . . . J 2 28.256 -21.08 117.767 1 151.9 ? O5' FMN 321 F 1 HETATM 28 P P FMN . . . J 2 27.781 -20.069 118.97 1 154.41 ? P FMN 321 F 1 HETATM 29 O O1P FMN . . . J 2 29.102 -19.321 119.194 1 156.17 ? O1P FMN 321 F 1 HETATM 30 O O2P FMN . . . J 2 27.301 -20.886 120.193 1 157.9 ? O2P FMN 321 F 1 HETATM 31 O O3P FMN . . . J 2 26.568 -19.211 118.535 1 156.57 ? O3P FMN 321 F 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #