data_3RHN # _model_server_result.job_id S12tDAeZGiD1pa2w-ZdP4A _model_server_result.datetime_utc '2024-11-08 05:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3RHN # _exptl.entry_id 3RHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RHN _cell.length_a 50.85 _cell.length_b 50.85 _cell.length_c 81.83 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 76.275 44.037392 27.276667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 3RHN _atom_sites.fract_transf_matrix[1][1] 0.019666 _atom_sites.fract_transf_matrix[1][2] 0.011354 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 201 201 5GP 5GP . C 3 HOH A 1 211 211 HOH HOH . C 3 HOH A 2 212 212 HOH HOH . C 3 HOH A 3 213 213 HOH HOH . C 3 HOH A 4 214 214 HOH HOH . C 3 HOH A 5 215 215 HOH HOH . C 3 HOH A 6 216 216 HOH HOH . C 3 HOH A 7 217 217 HOH HOH . C 3 HOH A 8 218 218 HOH HOH . C 3 HOH A 9 219 219 HOH HOH . C 3 HOH A 10 220 220 HOH HOH . C 3 HOH A 11 221 221 HOH HOH . C 3 HOH A 12 222 222 HOH HOH . C 3 HOH A 13 223 223 HOH HOH . C 3 HOH A 14 224 224 HOH HOH . C 3 HOH A 15 225 225 HOH HOH . C 3 HOH A 16 226 226 HOH HOH . C 3 HOH A 17 227 227 HOH HOH . C 3 HOH A 18 228 228 HOH HOH . C 3 HOH A 19 229 229 HOH HOH . C 3 HOH A 20 230 230 HOH HOH . C 3 HOH A 21 231 231 HOH HOH . C 3 HOH A 22 232 232 HOH HOH . C 3 HOH A 23 233 233 HOH HOH . C 3 HOH A 24 234 234 HOH HOH . C 3 HOH A 25 235 235 HOH HOH . C 3 HOH A 26 236 236 HOH HOH . C 3 HOH A 27 237 237 HOH HOH . C 3 HOH A 28 238 238 HOH HOH . C 3 HOH A 29 239 239 HOH HOH . C 3 HOH A 30 240 240 HOH HOH . C 3 HOH A 31 241 241 HOH HOH . C 3 HOH A 32 242 242 HOH HOH . C 3 HOH A 33 243 243 HOH HOH . C 3 HOH A 34 244 244 HOH HOH . C 3 HOH A 35 245 245 HOH HOH . C 3 HOH A 36 246 246 HOH HOH . C 3 HOH A 37 247 247 HOH HOH . C 3 HOH A 38 248 248 HOH HOH . C 3 HOH A 39 249 249 HOH HOH . C 3 HOH A 40 250 250 HOH HOH . C 3 HOH A 41 251 251 HOH HOH . C 3 HOH A 42 252 252 HOH HOH . C 3 HOH A 43 253 253 HOH HOH . C 3 HOH A 44 254 254 HOH HOH . C 3 HOH A 45 255 255 HOH HOH . C 3 HOH A 46 256 256 HOH HOH . C 3 HOH A 47 257 257 HOH HOH . C 3 HOH A 48 258 258 HOH HOH . C 3 HOH A 49 259 259 HOH HOH . C 3 HOH A 50 260 260 HOH HOH . C 3 HOH A 51 261 261 HOH HOH . C 3 HOH A 52 262 262 HOH HOH . C 3 HOH A 53 263 263 HOH HOH . C 3 HOH A 54 264 264 HOH HOH . C 3 HOH A 55 265 265 HOH HOH . C 3 HOH A 56 266 266 HOH HOH . C 3 HOH A 57 267 267 HOH HOH . C 3 HOH A 58 268 268 HOH HOH . C 3 HOH A 59 269 269 HOH HOH . C 3 HOH A 60 270 270 HOH HOH . C 3 HOH A 61 271 271 HOH HOH . C 3 HOH A 62 272 272 HOH HOH . C 3 HOH A 63 273 273 HOH HOH . C 3 HOH A 64 274 274 HOH HOH . C 3 HOH A 65 275 275 HOH HOH . C 3 HOH A 66 276 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 24.267 24.908 17.177 1 25.54 ? P 5GP 201 A 1 HETATM 2 O O1P 5GP . . . B 2 23.268 25.963 17.316 1 26.33 ? O1P 5GP 201 A 1 HETATM 3 O O2P 5GP . . . B 2 24.395 23.879 18.174 1 23.91 ? O2P 5GP 201 A 1 HETATM 4 O O3P 5GP . . . B 2 25.702 25.564 16.98 1 26.81 ? O3P 5GP 201 A 1 HETATM 5 O O5' 5GP . . . B 2 24.111 24.224 15.76 1 30.99 ? O5' 5GP 201 A 1 HETATM 6 C C5' 5GP . . . B 2 23.152 23.216 15.454 1 23.12 ? C5' 5GP 201 A 1 HETATM 7 C C4' 5GP . . . B 2 22.542 23.519 14.075 1 18.78 ? C4' 5GP 201 A 1 HETATM 8 O O4' 5GP . . . B 2 21.685 22.471 13.743 1 15.49 ? O4' 5GP 201 A 1 HETATM 9 C C3' 5GP . . . B 2 21.68 24.784 13.946 1 20.99 ? C3' 5GP 201 A 1 HETATM 10 O O3' 5GP . . . B 2 22.238 25.651 12.994 1 17.73 ? O3' 5GP 201 A 1 HETATM 11 C C2' 5GP . . . B 2 20.318 24.31 13.493 1 18.64 ? C2' 5GP 201 A 1 HETATM 12 O O2' 5GP . . . B 2 19.666 25.148 12.571 1 21.6 ? O2' 5GP 201 A 1 HETATM 13 C C1' 5GP . . . B 2 20.627 22.966 12.93 1 19.76 ? C1' 5GP 201 A 1 HETATM 14 N N9 5GP . . . B 2 19.54 21.983 13.053 1 18.95 ? N9 5GP 201 A 1 HETATM 15 C C8 5GP . . . B 2 18.763 21.707 14.144 1 20.01 ? C8 5GP 201 A 1 HETATM 16 N N7 5GP . . . B 2 17.84 20.83 13.96 1 19.4 ? N7 5GP 201 A 1 HETATM 17 C C5 5GP . . . B 2 18.007 20.475 12.619 1 20.43 ? C5 5GP 201 A 1 HETATM 18 C C6 5GP . . . B 2 17.261 19.567 11.814 1 21.25 ? C6 5GP 201 A 1 HETATM 19 O O6 5GP . . . B 2 16.228 18.975 12.132 1 21.66 ? O6 5GP 201 A 1 HETATM 20 N N1 5GP . . . B 2 17.826 19.375 10.545 1 18.43 ? N1 5GP 201 A 1 HETATM 21 C C2 5GP . . . B 2 18.931 20.049 10.079 1 20.39 ? C2 5GP 201 A 1 HETATM 22 N N2 5GP . . . B 2 19.401 19.726 8.891 1 20.51 ? N2 5GP 201 A 1 HETATM 23 N N3 5GP . . . B 2 19.554 21.009 10.771 1 22.35 ? N3 5GP 201 A 1 HETATM 24 C C4 5GP . . . B 2 19.064 21.139 12.062 1 21.9 ? C4 5GP 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #