data_3RHY # _model_server_result.job_id h_kIfVjg6Mw90v6aCVHYdg _model_server_result.datetime_utc '2024-11-22 04:17:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rhy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":255}' # _entry.id 3RHY # _exptl.entry_id 3RHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 143.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-chloropyridin-2-yl)methanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RHY _cell.length_a 45.8 _cell.length_b 73.28 _cell.length_c 149.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 249 A CYS 249 1_555 C C4 HM3 . A HM3 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? covale ? covale2 B SG CYS 249 B CYS 249 1_555 D C4 HM3 . B HM3 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? # _chem_comp.formula 'C6 H6 Cl N O' _chem_comp.formula_weight 143.571 _chem_comp.id HM3 _chem_comp.mon_nstd_flag . _chem_comp.name (4-chloropyridin-2-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-chloro-2-hydroxymethylpyridine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HM3 sing 150 n n C1 O1 HM3 sing 151 n n N1 C2 HM3 doub 152 n y N1 C6 HM3 sing 153 n y C2 C3 HM3 sing 154 n y C3 C4 HM3 doub 155 n y C3 H3 HM3 sing 156 n n C4 C5 HM3 sing 157 n y C4 CL1 HM3 sing 158 n n C5 C6 HM3 doub 159 n y C5 H4 HM3 sing 160 n n C6 H5 HM3 sing 161 n n O1 H6 HM3 sing 162 n n C1 HOM HM3 sing 163 n n C1 H61 HM3 sing 164 n n # _atom_sites.entry_id 3RHY _atom_sites.fract_transf_matrix[1][1] 0.021834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HM3 A 1 255 1 HM3 HM3 . D 2 HM3 B 1 255 1 HM3 HM3 . E 3 HOH A 1 256 1 HOH HOH . E 3 HOH A 2 257 257 HOH HOH . E 3 HOH A 3 258 2 HOH HOH . E 3 HOH A 4 259 4 HOH HOH . E 3 HOH A 5 260 260 HOH HOH . E 3 HOH A 6 261 5 HOH HOH . E 3 HOH A 7 262 262 HOH HOH . E 3 HOH A 8 263 6 HOH HOH . E 3 HOH A 9 264 264 HOH HOH . E 3 HOH A 10 265 8 HOH HOH . E 3 HOH A 11 266 9 HOH HOH . E 3 HOH A 12 267 11 HOH HOH . E 3 HOH A 13 268 14 HOH HOH . E 3 HOH A 14 269 269 HOH HOH . E 3 HOH A 15 270 16 HOH HOH . E 3 HOH A 16 271 17 HOH HOH . E 3 HOH A 17 272 18 HOH HOH . E 3 HOH A 18 273 273 HOH HOH . E 3 HOH A 19 274 19 HOH HOH . E 3 HOH A 20 275 29 HOH HOH . E 3 HOH A 21 276 31 HOH HOH . E 3 HOH A 22 277 33 HOH HOH . E 3 HOH A 23 278 36 HOH HOH . E 3 HOH A 24 279 38 HOH HOH . E 3 HOH A 25 280 42 HOH HOH . E 3 HOH A 26 281 45 HOH HOH . E 3 HOH A 27 282 48 HOH HOH . E 3 HOH A 28 283 49 HOH HOH . E 3 HOH A 29 284 50 HOH HOH . E 3 HOH A 30 285 52 HOH HOH . E 3 HOH A 31 286 286 HOH HOH . E 3 HOH A 32 287 56 HOH HOH . E 3 HOH A 33 288 62 HOH HOH . E 3 HOH A 34 289 66 HOH HOH . E 3 HOH A 35 290 74 HOH HOH . E 3 HOH A 36 291 85 HOH HOH . E 3 HOH A 37 292 92 HOH HOH . E 3 HOH A 38 293 97 HOH HOH . E 3 HOH A 39 294 98 HOH HOH . E 3 HOH A 40 295 100 HOH HOH . E 3 HOH A 41 296 101 HOH HOH . E 3 HOH A 42 297 105 HOH HOH . E 3 HOH A 43 298 298 HOH HOH . E 3 HOH A 44 299 107 HOH HOH . E 3 HOH A 45 300 112 HOH HOH . E 3 HOH A 46 301 115 HOH HOH . E 3 HOH A 47 302 302 HOH HOH . E 3 HOH A 48 303 117 HOH HOH . E 3 HOH A 49 304 121 HOH HOH . E 3 HOH A 50 305 123 HOH HOH . E 3 HOH A 51 306 129 HOH HOH . E 3 HOH A 52 307 143 HOH HOH . E 3 HOH A 53 308 153 HOH HOH . E 3 HOH A 54 309 174 HOH HOH . E 3 HOH A 55 310 180 HOH HOH . E 3 HOH A 56 311 311 HOH HOH . E 3 HOH A 57 312 312 HOH HOH . E 3 HOH A 58 313 313 HOH HOH . E 3 HOH A 59 314 189 HOH HOH . E 3 HOH A 60 315 194 HOH HOH . E 3 HOH A 61 316 200 HOH HOH . E 3 HOH A 62 317 201 HOH HOH . E 3 HOH A 63 318 203 HOH HOH . E 3 HOH A 64 319 204 HOH HOH . E 3 HOH A 65 320 209 HOH HOH . E 3 HOH A 66 321 321 HOH HOH . E 3 HOH A 67 322 210 HOH HOH . E 3 HOH A 68 323 212 HOH HOH . E 3 HOH A 69 324 215 HOH HOH . E 3 HOH A 70 325 221 HOH HOH . E 3 HOH A 71 326 226 HOH HOH . E 3 HOH A 72 327 230 HOH HOH . E 3 HOH A 73 328 232 HOH HOH . E 3 HOH A 74 329 239 HOH HOH . E 3 HOH A 75 330 242 HOH HOH . E 3 HOH A 76 331 245 HOH HOH . E 3 HOH A 77 332 247 HOH HOH . E 3 HOH A 78 333 252 HOH HOH . E 3 HOH A 79 337 337 HOH HOH . E 3 HOH A 80 339 339 HOH HOH . E 3 HOH A 81 341 341 HOH HOH . E 3 HOH A 82 344 344 HOH HOH . E 3 HOH A 83 345 345 HOH HOH . E 3 HOH A 84 355 355 HOH HOH . E 3 HOH A 85 357 357 HOH HOH . E 3 HOH A 86 362 362 HOH HOH . E 3 HOH A 87 372 372 HOH HOH . E 3 HOH A 88 383 383 HOH HOH . E 3 HOH A 89 385 385 HOH HOH . E 3 HOH A 90 386 386 HOH HOH . E 3 HOH A 91 387 387 HOH HOH . E 3 HOH A 92 388 388 HOH HOH . E 3 HOH A 93 389 389 HOH HOH . E 3 HOH A 94 391 391 HOH HOH . E 3 HOH A 95 395 395 HOH HOH . E 3 HOH A 96 397 397 HOH HOH . E 3 HOH A 97 398 398 HOH HOH . E 3 HOH A 98 405 405 HOH HOH . E 3 HOH A 99 406 406 HOH HOH . E 3 HOH A 100 407 407 HOH HOH . E 3 HOH A 101 408 408 HOH HOH . F 3 HOH B 1 256 3 HOH HOH . F 3 HOH B 2 257 7 HOH HOH . F 3 HOH B 3 258 10 HOH HOH . F 3 HOH B 4 259 13 HOH HOH . F 3 HOH B 5 260 20 HOH HOH . F 3 HOH B 6 261 21 HOH HOH . F 3 HOH B 7 262 22 HOH HOH . F 3 HOH B 8 263 263 HOH HOH . F 3 HOH B 9 264 24 HOH HOH . F 3 HOH B 10 265 27 HOH HOH . F 3 HOH B 11 266 28 HOH HOH . F 3 HOH B 12 267 30 HOH HOH . F 3 HOH B 13 268 32 HOH HOH . F 3 HOH B 14 269 34 HOH HOH . F 3 HOH B 15 270 270 HOH HOH . F 3 HOH B 16 271 271 HOH HOH . F 3 HOH B 17 272 39 HOH HOH . F 3 HOH B 18 273 40 HOH HOH . F 3 HOH B 19 274 274 HOH HOH . F 3 HOH B 20 275 275 HOH HOH . F 3 HOH B 21 276 41 HOH HOH . F 3 HOH B 22 277 277 HOH HOH . F 3 HOH B 23 278 44 HOH HOH . F 3 HOH B 24 279 53 HOH HOH . F 3 HOH B 25 280 54 HOH HOH . F 3 HOH B 26 281 281 HOH HOH . F 3 HOH B 27 282 55 HOH HOH . F 3 HOH B 28 283 58 HOH HOH . F 3 HOH B 29 284 65 HOH HOH . F 3 HOH B 30 285 285 HOH HOH . F 3 HOH B 31 286 68 HOH HOH . F 3 HOH B 32 287 71 HOH HOH . F 3 HOH B 33 288 73 HOH HOH . F 3 HOH B 34 289 77 HOH HOH . F 3 HOH B 35 290 79 HOH HOH . F 3 HOH B 36 291 80 HOH HOH . F 3 HOH B 37 292 82 HOH HOH . F 3 HOH B 38 293 293 HOH HOH . F 3 HOH B 39 294 86 HOH HOH . F 3 HOH B 40 295 87 HOH HOH . F 3 HOH B 41 296 296 HOH HOH . F 3 HOH B 42 297 88 HOH HOH . F 3 HOH B 43 298 91 HOH HOH . F 3 HOH B 44 299 299 HOH HOH . F 3 HOH B 45 300 93 HOH HOH . F 3 HOH B 46 301 301 HOH HOH . F 3 HOH B 47 302 95 HOH HOH . F 3 HOH B 48 303 99 HOH HOH . F 3 HOH B 49 304 304 HOH HOH . F 3 HOH B 50 305 102 HOH HOH . F 3 HOH B 51 306 109 HOH HOH . F 3 HOH B 52 307 118 HOH HOH . F 3 HOH B 53 308 119 HOH HOH . F 3 HOH B 54 309 126 HOH HOH . F 3 HOH B 55 310 130 HOH HOH . F 3 HOH B 56 311 132 HOH HOH . F 3 HOH B 57 312 139 HOH HOH . F 3 HOH B 58 313 142 HOH HOH . F 3 HOH B 59 314 144 HOH HOH . F 3 HOH B 60 315 145 HOH HOH . F 3 HOH B 61 316 146 HOH HOH . F 3 HOH B 62 317 317 HOH HOH . F 3 HOH B 63 318 147 HOH HOH . F 3 HOH B 64 319 152 HOH HOH . F 3 HOH B 65 320 158 HOH HOH . F 3 HOH B 66 321 160 HOH HOH . F 3 HOH B 67 322 322 HOH HOH . F 3 HOH B 68 323 163 HOH HOH . F 3 HOH B 69 324 164 HOH HOH . F 3 HOH B 70 325 325 HOH HOH . F 3 HOH B 71 326 167 HOH HOH . F 3 HOH B 72 327 170 HOH HOH . F 3 HOH B 73 328 171 HOH HOH . F 3 HOH B 74 329 175 HOH HOH . F 3 HOH B 75 330 176 HOH HOH . F 3 HOH B 76 331 179 HOH HOH . F 3 HOH B 77 332 332 HOH HOH . F 3 HOH B 78 333 190 HOH HOH . F 3 HOH B 79 334 198 HOH HOH . F 3 HOH B 80 335 199 HOH HOH . F 3 HOH B 81 336 202 HOH HOH . F 3 HOH B 82 337 205 HOH HOH . F 3 HOH B 83 338 206 HOH HOH . F 3 HOH B 84 339 213 HOH HOH . F 3 HOH B 85 340 214 HOH HOH . F 3 HOH B 86 341 216 HOH HOH . F 3 HOH B 87 342 217 HOH HOH . F 3 HOH B 88 343 218 HOH HOH . F 3 HOH B 89 344 219 HOH HOH . F 3 HOH B 90 345 222 HOH HOH . F 3 HOH B 91 346 224 HOH HOH . F 3 HOH B 92 347 225 HOH HOH . F 3 HOH B 93 348 229 HOH HOH . F 3 HOH B 94 349 237 HOH HOH . F 3 HOH B 95 350 240 HOH HOH . F 3 HOH B 96 351 244 HOH HOH . F 3 HOH B 97 352 246 HOH HOH . F 3 HOH B 98 353 353 HOH HOH . F 3 HOH B 99 354 249 HOH HOH . F 3 HOH B 100 355 251 HOH HOH . F 3 HOH B 101 364 364 HOH HOH . F 3 HOH B 102 366 366 HOH HOH . F 3 HOH B 103 371 371 HOH HOH . F 3 HOH B 104 373 373 HOH HOH . F 3 HOH B 105 374 374 HOH HOH . F 3 HOH B 106 375 375 HOH HOH . F 3 HOH B 107 376 376 HOH HOH . F 3 HOH B 108 377 377 HOH HOH . F 3 HOH B 109 378 378 HOH HOH . F 3 HOH B 110 380 380 HOH HOH . F 3 HOH B 111 381 381 HOH HOH . F 3 HOH B 112 382 382 HOH HOH . F 3 HOH B 113 384 384 HOH HOH . F 3 HOH B 114 390 390 HOH HOH . F 3 HOH B 115 393 393 HOH HOH . F 3 HOH B 116 394 394 HOH HOH . F 3 HOH B 117 396 396 HOH HOH . F 3 HOH B 118 399 399 HOH HOH . F 3 HOH B 119 400 400 HOH HOH . F 3 HOH B 120 401 401 HOH HOH . F 3 HOH B 121 402 402 HOH HOH . F 3 HOH B 122 404 404 HOH HOH . F 3 HOH B 123 409 409 HOH HOH . F 3 HOH B 124 410 410 HOH HOH . F 3 HOH B 125 411 411 HOH HOH . F 3 HOH B 126 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HM3 . . . C 2 -9.803 3.899 -2.641 1 57.44 ? C1 HM3 255 A 1 HETATM 2 N N1 HM3 . . . C 2 -9.485 1.48 -3.102 1 54.54 ? N1 HM3 255 A 1 HETATM 3 C C2 HM3 . . . C 2 -9.558 2.726 -3.593 1 54.6 ? C2 HM3 255 A 1 HETATM 4 C C3 HM3 . . . C 2 -9.407 2.958 -4.955 1 52.2 ? C3 HM3 255 A 1 HETATM 5 C C4 HM3 . . . C 2 -9.179 1.884 -5.808 1 48.76 ? C4 HM3 255 A 1 HETATM 6 C C5 HM3 . . . C 2 -9.11 0.61 -5.26 1 51.45 ? C5 HM3 255 A 1 HETATM 7 C C6 HM3 . . . C 2 -9.27 0.441 -3.888 1 53.42 ? C6 HM3 255 A 1 HETATM 8 O O1 HM3 . . . C 2 -9.123 3.696 -1.399 1 61.08 ? O1 HM3 255 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #