data_3RI3 # _model_server_result.job_id '_ZwEQIw5LWj--wlOLIspOA' _model_server_result.datetime_utc '2024-11-24 21:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ri3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3RI3 # _exptl.entry_id 3RI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RI3 _cell.length_a 105.089 _cell.length_b 105.089 _cell.length_c 123.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_643 y+1,x-1,-z-2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 157.6335 -91.009744 -247.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 269 n n PA O2A NDP sing 270 n n PA O5B NDP sing 271 n n PA O3 NDP sing 272 n n O2A HOA2 NDP sing 273 n n O5B C5B NDP sing 274 n n C5B C4B NDP sing 275 n n C5B H51A NDP sing 276 n n C5B H52A NDP sing 277 n n C4B O4B NDP sing 278 n n C4B C3B NDP sing 279 n n C4B H4B NDP sing 280 n n O4B C1B NDP sing 281 n n C3B O3B NDP sing 282 n n C3B C2B NDP sing 283 n n C3B H3B NDP sing 284 n n O3B HO3A NDP sing 285 n n C2B O2B NDP sing 286 n n C2B C1B NDP sing 287 n n C2B H2B NDP sing 288 n n O2B P2B NDP sing 289 n n C1B N9A NDP sing 290 n n C1B H1B NDP sing 291 n n N9A C8A NDP sing 292 n y N9A C4A NDP sing 293 n y C8A N7A NDP doub 294 n y C8A H8A NDP sing 295 n n N7A C5A NDP sing 296 n y C5A C6A NDP sing 297 n y C5A C4A NDP doub 298 n y C6A N6A NDP sing 299 n n C6A N1A NDP doub 300 n y N6A H61A NDP sing 301 n n N6A H62A NDP sing 302 n n N1A C2A NDP sing 303 n y C2A N3A NDP doub 304 n y C2A H2A NDP sing 305 n n N3A C4A NDP sing 306 n y O3 PN NDP sing 307 n n PN O1N NDP doub 308 n n PN O2N NDP sing 309 n n PN O5D NDP sing 310 n n O2N H21N NDP sing 311 n n O5D C5D NDP sing 312 n n C5D C4D NDP sing 313 n n C5D H51N NDP sing 314 n n C5D H52N NDP sing 315 n n C4D O4D NDP sing 316 n n C4D C3D NDP sing 317 n n C4D H4D NDP sing 318 n n O4D C1D NDP sing 319 n n C3D O3D NDP sing 320 n n C3D C2D NDP sing 321 n n C3D H3D NDP sing 322 n n O3D HO3N NDP sing 323 n n C2D O2D NDP sing 324 n n C2D C1D NDP sing 325 n n C2D H2D NDP sing 326 n n O2D HO2N NDP sing 327 n n C1D N1N NDP sing 328 n n C1D H1D NDP sing 329 n n N1N C2N NDP sing 330 n n N1N C6N NDP sing 331 n n C2N C3N NDP doub 332 n n C2N H2N NDP sing 333 n n C3N C7N NDP sing 334 n n C3N C4N NDP sing 335 n n C7N O7N NDP doub 336 n n C7N N7N NDP sing 337 n n N7N H71N NDP sing 338 n n N7N H72N NDP sing 339 n n C4N C5N NDP sing 340 n n C4N H41N NDP sing 341 n n C4N H42N NDP sing 342 n n C5N C6N NDP doub 343 n n C5N H5N NDP sing 344 n n C6N H6N NDP sing 345 n n P2B O1X NDP doub 346 n n P2B O2X NDP sing 347 n n P2B O3X NDP sing 348 n n O2X HOP2 NDP sing 349 n n O3X HOP3 NDP sing 350 n n # _atom_sites.entry_id 3RI3 _atom_sites.fract_transf_matrix[1][1] 0.009516 _atom_sites.fract_transf_matrix[1][2] 0.005494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP B 1 301 301 NDP NDP . D 3 EMO B 1 302 302 EMO EMO . E 3 EMO B 1 303 303 EMO EMO . F 2 NDP A 1 301 301 NDP NDP . G 3 EMO A 1 302 302 EMO EMO . H 3 EMO A 1 303 303 EMO EMO . I 4 HOH B 1 262 1 HOH HOH . I 4 HOH B 2 263 2 HOH HOH . I 4 HOH B 3 264 3 HOH HOH . I 4 HOH B 4 265 4 HOH HOH . I 4 HOH B 5 266 5 HOH HOH . I 4 HOH B 6 267 6 HOH HOH . I 4 HOH B 7 268 8 HOH HOH . I 4 HOH B 8 269 9 HOH HOH . I 4 HOH B 9 270 10 HOH HOH . I 4 HOH B 10 271 11 HOH HOH . I 4 HOH B 11 272 12 HOH HOH . I 4 HOH B 12 273 13 HOH HOH . I 4 HOH B 13 274 14 HOH HOH . I 4 HOH B 14 275 15 HOH HOH . I 4 HOH B 15 276 16 HOH HOH . I 4 HOH B 16 277 17 HOH HOH . I 4 HOH B 17 278 18 HOH HOH . I 4 HOH B 18 279 19 HOH HOH . I 4 HOH B 19 280 20 HOH HOH . I 4 HOH B 20 281 21 HOH HOH . I 4 HOH B 21 282 22 HOH HOH . I 4 HOH B 22 283 23 HOH HOH . I 4 HOH B 23 284 24 HOH HOH . I 4 HOH B 24 285 25 HOH HOH . I 4 HOH B 25 286 26 HOH HOH . I 4 HOH B 26 287 27 HOH HOH . I 4 HOH B 27 288 28 HOH HOH . I 4 HOH B 28 289 29 HOH HOH . I 4 HOH B 29 290 30 HOH HOH . I 4 HOH B 30 291 31 HOH HOH . I 4 HOH B 31 292 32 HOH HOH . I 4 HOH B 32 293 33 HOH HOH . I 4 HOH B 33 294 34 HOH HOH . I 4 HOH B 34 295 35 HOH HOH . I 4 HOH B 35 296 36 HOH HOH . I 4 HOH B 36 297 37 HOH HOH . I 4 HOH B 37 298 38 HOH HOH . I 4 HOH B 38 299 39 HOH HOH . I 4 HOH B 39 300 40 HOH HOH . I 4 HOH B 40 304 41 HOH HOH . I 4 HOH B 41 305 42 HOH HOH . I 4 HOH B 42 306 43 HOH HOH . I 4 HOH B 43 307 44 HOH HOH . I 4 HOH B 44 308 88 HOH HOH . I 4 HOH B 45 309 89 HOH HOH . I 4 HOH B 46 310 90 HOH HOH . I 4 HOH B 47 311 91 HOH HOH . I 4 HOH B 48 312 94 HOH HOH . I 4 HOH B 49 313 95 HOH HOH . I 4 HOH B 50 314 96 HOH HOH . I 4 HOH B 51 315 98 HOH HOH . I 4 HOH B 52 316 106 HOH HOH . J 4 HOH A 1 262 7 HOH HOH . J 4 HOH A 2 263 45 HOH HOH . J 4 HOH A 3 264 46 HOH HOH . J 4 HOH A 4 265 47 HOH HOH . J 4 HOH A 5 266 48 HOH HOH . J 4 HOH A 6 267 49 HOH HOH . J 4 HOH A 7 268 50 HOH HOH . J 4 HOH A 8 269 51 HOH HOH . J 4 HOH A 9 270 52 HOH HOH . J 4 HOH A 10 271 53 HOH HOH . J 4 HOH A 11 272 54 HOH HOH . J 4 HOH A 12 273 55 HOH HOH . J 4 HOH A 13 274 56 HOH HOH . J 4 HOH A 14 275 57 HOH HOH . J 4 HOH A 15 276 58 HOH HOH . J 4 HOH A 16 277 59 HOH HOH . J 4 HOH A 17 278 60 HOH HOH . J 4 HOH A 18 279 61 HOH HOH . J 4 HOH A 19 280 62 HOH HOH . J 4 HOH A 20 281 63 HOH HOH . J 4 HOH A 21 282 64 HOH HOH . J 4 HOH A 22 283 65 HOH HOH . J 4 HOH A 23 284 66 HOH HOH . J 4 HOH A 24 285 67 HOH HOH . J 4 HOH A 25 286 68 HOH HOH . J 4 HOH A 26 287 69 HOH HOH . J 4 HOH A 27 288 70 HOH HOH . J 4 HOH A 28 289 71 HOH HOH . J 4 HOH A 29 290 72 HOH HOH . J 4 HOH A 30 291 73 HOH HOH . J 4 HOH A 31 292 74 HOH HOH . J 4 HOH A 32 293 75 HOH HOH . J 4 HOH A 33 294 76 HOH HOH . J 4 HOH A 34 295 77 HOH HOH . J 4 HOH A 35 296 78 HOH HOH . J 4 HOH A 36 297 79 HOH HOH . J 4 HOH A 37 298 80 HOH HOH . J 4 HOH A 38 299 81 HOH HOH . J 4 HOH A 39 300 82 HOH HOH . J 4 HOH A 40 304 83 HOH HOH . J 4 HOH A 41 305 84 HOH HOH . J 4 HOH A 42 306 85 HOH HOH . J 4 HOH A 43 307 86 HOH HOH . J 4 HOH A 44 308 87 HOH HOH . J 4 HOH A 45 309 92 HOH HOH . J 4 HOH A 46 310 93 HOH HOH . J 4 HOH A 47 311 97 HOH HOH . J 4 HOH A 48 312 99 HOH HOH . J 4 HOH A 49 313 100 HOH HOH . J 4 HOH A 50 314 101 HOH HOH . J 4 HOH A 51 315 103 HOH HOH . J 4 HOH A 52 316 105 HOH HOH . J 4 HOH A 53 317 107 HOH HOH . J 4 HOH A 54 318 108 HOH HOH . J 4 HOH A 55 319 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 123.905 82.111 -123.692 1 56.01 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . C 2 124.448 82.478 -122.29 1 67.07 ? O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . C 2 124.712 82.593 -124.941 1 63.17 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . C 2 122.802 80.951 -123.8 1 60.45 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . C 2 122.146 80.461 -122.645 1 56.36 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . C 2 120.64 80.3 -122.71 1 56.27 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . C 2 120.124 79.386 -121.696 1 57.14 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . C 2 119.907 81.591 -122.554 1 64.02 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . C 2 119.033 81.7 -123.645 1 57.29 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . C 2 119.284 81.506 -121.253 1 58.23 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . C 2 118.116 82.307 -121.238 1 61.62 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . C 2 119.071 80.013 -121.028 1 54.02 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . C 2 118.978 79.579 -119.628 1 52.86 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . C 2 119.882 79.815 -118.642 1 56.47 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . C 2 119.465 79.266 -117.478 1 51.16 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . C 2 118.277 78.665 -117.722 1 51.33 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . C 2 117.397 77.949 -116.907 1 51.78 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . C 2 117.683 77.743 -115.519 1 56.19 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . C 2 116.256 77.457 -117.446 1 47.65 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . C 2 115.981 77.664 -118.748 1 49.25 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . C 2 116.818 78.355 -119.561 1 50.63 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . C 2 117.97 78.864 -119.073 1 51.3 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . C 2 125.04 80.994 -123.569 1 58.96 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . C 2 125.413 79.785 -124.593 1 62.39 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . C 2 126.925 79.811 -124.881 1 54.67 ? O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . C 2 124.629 79.744 -125.967 1 47.73 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . C 2 125.139 78.45 -123.82 1 60.74 ? O5D NDP 301 B 1 HETATM 28 C C5D NDP . . . C 2 124.302 77.456 -124.282 1 54.89 ? C5D NDP 301 B 1 HETATM 29 C C4D NDP . . . C 2 124.724 76.048 -123.885 1 54.14 ? C4D NDP 301 B 1 HETATM 30 O O4D NDP . . . C 2 125.897 75.69 -124.542 1 56.66 ? O4D NDP 301 B 1 HETATM 31 C C3D NDP . . . C 2 124.994 75.847 -122.391 1 56.13 ? C3D NDP 301 B 1 HETATM 32 O O3D NDP . . . C 2 124.57 74.562 -121.985 1 49.24 ? O3D NDP 301 B 1 HETATM 33 C C2D NDP . . . C 2 126.438 76.023 -122.286 1 60.81 ? C2D NDP 301 B 1 HETATM 34 O O2D NDP . . . C 2 126.992 75.47 -121.14 1 53.6 ? O2D NDP 301 B 1 HETATM 35 C C1D NDP . . . C 2 126.893 75.31 -123.523 1 55.75 ? C1D NDP 301 B 1 HETATM 36 N N1N NDP . . . C 2 128.311 75.46 -123.895 1 54.05 ? N1N NDP 301 B 1 HETATM 37 C C2N NDP . . . C 2 128.757 76.779 -124.221 1 55.69 ? C2N NDP 301 B 1 HETATM 38 C C3N NDP . . . C 2 130.154 76.977 -124.707 1 55.72 ? C3N NDP 301 B 1 HETATM 39 C C7N NDP . . . C 2 130.545 78.333 -125.173 1 60.1 ? C7N NDP 301 B 1 HETATM 40 O O7N NDP . . . C 2 131.709 78.636 -125.326 1 55.29 ? O7N NDP 301 B 1 HETATM 41 N N7N NDP . . . C 2 129.536 79.27 -125.435 1 57.84 ? N7N NDP 301 B 1 HETATM 42 C C4N NDP . . . C 2 130.906 75.8 -125.24 1 56.48 ? C4N NDP 301 B 1 HETATM 43 C C5N NDP . . . C 2 130.505 74.484 -124.665 1 55.18 ? C5N NDP 301 B 1 HETATM 44 C C6N NDP . . . C 2 129.198 74.345 -123.951 1 53.34 ? C6N NDP 301 B 1 HETATM 45 P P2B NDP . . . C 2 117.611 83.064 -119.945 1 60.05 ? P2B NDP 301 B 1 HETATM 46 O O1X NDP . . . C 2 118.775 83.681 -119.164 1 60.93 ? O1X NDP 301 B 1 HETATM 47 O O2X NDP . . . C 2 116.905 82.074 -119.044 1 54.94 ? O2X NDP 301 B 1 HETATM 48 O O3X NDP . . . C 2 116.648 84.151 -120.374 1 58.73 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #