data_3RI3 # _model_server_result.job_id -lChCp3ahK0gLj97WasOqA _model_server_result.datetime_utc '2024-11-28 15:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ri3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 3RI3 # _exptl.entry_id 3RI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RI3 _cell.length_a 105.089 _cell.length_b 105.089 _cell.length_c 123.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_643 y+1,x-1,-z-2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 157.6335 -91.009744 -247.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id EMO _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EMODIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EMO sing 83 n n C1 C2 EMO doub 84 n y C1 C20 EMO sing 85 n y O1 HO1 EMO sing 86 n n C2 C3 EMO sing 87 n y C2 H2 EMO sing 88 n n C3 O3 EMO sing 89 n n C3 C4 EMO doub 90 n y O3 HO3 EMO sing 91 n n C4 C5 EMO sing 92 n y C4 H4 EMO sing 93 n n C5 C6 EMO sing 94 n n C5 C20 EMO doub 95 n y C6 O6 EMO doub 96 n n C6 C7 EMO sing 97 n n C7 C8 EMO doub 98 n y C7 C18 EMO sing 99 n y C8 C9 EMO sing 100 n y C8 H8 EMO sing 101 n n C9 C10 EMO sing 102 n n C9 C16 EMO doub 103 n y C10 H101 EMO sing 104 n n C10 H102 EMO sing 105 n n C10 H103 EMO sing 106 n n C16 C17 EMO sing 107 n y C16 H16 EMO sing 108 n n C17 O17 EMO sing 109 n n C17 C18 EMO doub 110 n y O17 H17 EMO sing 111 n n C18 C19 EMO sing 112 n n C19 O19 EMO doub 113 n n C19 C20 EMO sing 114 n n # _atom_sites.entry_id 3RI3 _atom_sites.fract_transf_matrix[1][1] 0.009516 _atom_sites.fract_transf_matrix[1][2] 0.005494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP B 1 301 301 NDP NDP . D 3 EMO B 1 302 302 EMO EMO . E 3 EMO B 1 303 303 EMO EMO . F 2 NDP A 1 301 301 NDP NDP . G 3 EMO A 1 302 302 EMO EMO . H 3 EMO A 1 303 303 EMO EMO . I 4 HOH B 1 262 1 HOH HOH . I 4 HOH B 2 263 2 HOH HOH . I 4 HOH B 3 264 3 HOH HOH . I 4 HOH B 4 265 4 HOH HOH . I 4 HOH B 5 266 5 HOH HOH . I 4 HOH B 6 267 6 HOH HOH . I 4 HOH B 7 268 8 HOH HOH . I 4 HOH B 8 269 9 HOH HOH . I 4 HOH B 9 270 10 HOH HOH . I 4 HOH B 10 271 11 HOH HOH . I 4 HOH B 11 272 12 HOH HOH . I 4 HOH B 12 273 13 HOH HOH . I 4 HOH B 13 274 14 HOH HOH . I 4 HOH B 14 275 15 HOH HOH . I 4 HOH B 15 276 16 HOH HOH . I 4 HOH B 16 277 17 HOH HOH . I 4 HOH B 17 278 18 HOH HOH . I 4 HOH B 18 279 19 HOH HOH . I 4 HOH B 19 280 20 HOH HOH . I 4 HOH B 20 281 21 HOH HOH . I 4 HOH B 21 282 22 HOH HOH . I 4 HOH B 22 283 23 HOH HOH . I 4 HOH B 23 284 24 HOH HOH . I 4 HOH B 24 285 25 HOH HOH . I 4 HOH B 25 286 26 HOH HOH . I 4 HOH B 26 287 27 HOH HOH . I 4 HOH B 27 288 28 HOH HOH . I 4 HOH B 28 289 29 HOH HOH . I 4 HOH B 29 290 30 HOH HOH . I 4 HOH B 30 291 31 HOH HOH . I 4 HOH B 31 292 32 HOH HOH . I 4 HOH B 32 293 33 HOH HOH . I 4 HOH B 33 294 34 HOH HOH . I 4 HOH B 34 295 35 HOH HOH . I 4 HOH B 35 296 36 HOH HOH . I 4 HOH B 36 297 37 HOH HOH . I 4 HOH B 37 298 38 HOH HOH . I 4 HOH B 38 299 39 HOH HOH . I 4 HOH B 39 300 40 HOH HOH . I 4 HOH B 40 304 41 HOH HOH . I 4 HOH B 41 305 42 HOH HOH . I 4 HOH B 42 306 43 HOH HOH . I 4 HOH B 43 307 44 HOH HOH . I 4 HOH B 44 308 88 HOH HOH . I 4 HOH B 45 309 89 HOH HOH . I 4 HOH B 46 310 90 HOH HOH . I 4 HOH B 47 311 91 HOH HOH . I 4 HOH B 48 312 94 HOH HOH . I 4 HOH B 49 313 95 HOH HOH . I 4 HOH B 50 314 96 HOH HOH . I 4 HOH B 51 315 98 HOH HOH . I 4 HOH B 52 316 106 HOH HOH . J 4 HOH A 1 262 7 HOH HOH . J 4 HOH A 2 263 45 HOH HOH . J 4 HOH A 3 264 46 HOH HOH . J 4 HOH A 4 265 47 HOH HOH . J 4 HOH A 5 266 48 HOH HOH . J 4 HOH A 6 267 49 HOH HOH . J 4 HOH A 7 268 50 HOH HOH . J 4 HOH A 8 269 51 HOH HOH . J 4 HOH A 9 270 52 HOH HOH . J 4 HOH A 10 271 53 HOH HOH . J 4 HOH A 11 272 54 HOH HOH . J 4 HOH A 12 273 55 HOH HOH . J 4 HOH A 13 274 56 HOH HOH . J 4 HOH A 14 275 57 HOH HOH . J 4 HOH A 15 276 58 HOH HOH . J 4 HOH A 16 277 59 HOH HOH . J 4 HOH A 17 278 60 HOH HOH . J 4 HOH A 18 279 61 HOH HOH . J 4 HOH A 19 280 62 HOH HOH . J 4 HOH A 20 281 63 HOH HOH . J 4 HOH A 21 282 64 HOH HOH . J 4 HOH A 22 283 65 HOH HOH . J 4 HOH A 23 284 66 HOH HOH . J 4 HOH A 24 285 67 HOH HOH . J 4 HOH A 25 286 68 HOH HOH . J 4 HOH A 26 287 69 HOH HOH . J 4 HOH A 27 288 70 HOH HOH . J 4 HOH A 28 289 71 HOH HOH . J 4 HOH A 29 290 72 HOH HOH . J 4 HOH A 30 291 73 HOH HOH . J 4 HOH A 31 292 74 HOH HOH . J 4 HOH A 32 293 75 HOH HOH . J 4 HOH A 33 294 76 HOH HOH . J 4 HOH A 34 295 77 HOH HOH . J 4 HOH A 35 296 78 HOH HOH . J 4 HOH A 36 297 79 HOH HOH . J 4 HOH A 37 298 80 HOH HOH . J 4 HOH A 38 299 81 HOH HOH . J 4 HOH A 39 300 82 HOH HOH . J 4 HOH A 40 304 83 HOH HOH . J 4 HOH A 41 305 84 HOH HOH . J 4 HOH A 42 306 85 HOH HOH . J 4 HOH A 43 307 86 HOH HOH . J 4 HOH A 44 308 87 HOH HOH . J 4 HOH A 45 309 92 HOH HOH . J 4 HOH A 46 310 93 HOH HOH . J 4 HOH A 47 311 97 HOH HOH . J 4 HOH A 48 312 99 HOH HOH . J 4 HOH A 49 313 100 HOH HOH . J 4 HOH A 50 314 101 HOH HOH . J 4 HOH A 51 315 103 HOH HOH . J 4 HOH A 52 316 105 HOH HOH . J 4 HOH A 53 317 107 HOH HOH . J 4 HOH A 54 318 108 HOH HOH . J 4 HOH A 55 319 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EMO . . . E 3 132.716 78.21 -122.173 1 72.7 ? C1 EMO 303 B 1 HETATM 2 O O1 EMO . . . E 3 132.367 79.499 -121.82 1 75.13 ? O1 EMO 303 B 1 HETATM 3 C C2 EMO . . . E 3 131.775 77.195 -122.02 1 66.73 ? C2 EMO 303 B 1 HETATM 4 C C3 EMO . . . E 3 132.103 75.882 -122.374 1 65.98 ? C3 EMO 303 B 1 HETATM 5 O O3 EMO . . . E 3 131.184 74.876 -122.225 1 68.15 ? O3 EMO 303 B 1 HETATM 6 C C4 EMO . . . E 3 133.357 75.575 -122.881 1 67.87 ? C4 EMO 303 B 1 HETATM 7 C C5 EMO . . . E 3 134.319 76.601 -123.034 1 69.61 ? C5 EMO 303 B 1 HETATM 8 C C6 EMO . . . E 3 135.664 76.24 -123.578 1 74.97 ? C6 EMO 303 B 1 HETATM 9 O O6 EMO . . . E 3 135.907 75.075 -123.872 1 73.88 ? O6 EMO 303 B 1 HETATM 10 C C7 EMO . . . E 3 136.7 77.307 -123.751 1 76.65 ? C7 EMO 303 B 1 HETATM 11 C C8 EMO . . . E 3 137.985 76.971 -124.265 1 74.82 ? C8 EMO 303 B 1 HETATM 12 C C9 EMO . . . E 3 138.951 77.957 -124.425 1 75.64 ? C9 EMO 303 B 1 HETATM 13 C C10 EMO . . . E 3 140.298 77.608 -124.967 1 76.87 ? C10 EMO 303 B 1 HETATM 14 C C16 EMO . . . E 3 138.649 79.279 -124.08 1 79.36 ? C16 EMO 303 B 1 HETATM 15 C C17 EMO . . . E 3 137.392 79.614 -123.573 1 75.99 ? C17 EMO 303 B 1 HETATM 16 O O17 EMO . . . E 3 137.104 80.919 -123.235 1 79.46 ? O17 EMO 303 B 1 HETATM 17 C C18 EMO . . . E 3 136.404 78.609 -123.408 1 76.01 ? C18 EMO 303 B 1 HETATM 18 C C19 EMO . . . E 3 135.052 78.967 -122.864 1 76.14 ? C19 EMO 303 B 1 HETATM 19 O O19 EMO . . . E 3 134.794 80.128 -122.565 1 75.39 ? O19 EMO 303 B 1 HETATM 20 C C20 EMO . . . E 3 134.013 77.899 -122.69 1 71.83 ? C20 EMO 303 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #