data_3RI5
#
_model_server_result.job_id            -fRDZ1LIe27RtD_vANcXGQ 
_model_server_result.datetime_utc      '2024-11-05 08:34:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ri5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":350}' 
#
_entry.id    3RI5 
#
_exptl.entry_id    3RI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RI5 
_cell.length_a            154.843 
_cell.length_b            154.843 
_cell.length_c            573.473 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Q N N 
? 5 R N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 A CYS 130 1_555 A SG CYS 144 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 191 A CYS 191 1_555 A SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 191 B CYS 191 1_555 B SG CYS 202 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 C SG CYS 191 C CYS 191 1_555 C SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 D SG CYS 130 D CYS 130 1_555 D SG CYS 144 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf8 D SG CYS 191 D CYS 191 1_555 D SG CYS 202 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf9 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 E SG CYS 191 E CYS 191 1_555 E SG CYS 202 E CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf11 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 F SG CYS 149 F CYS 149 1_555 F SG CYS 204 F CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 G SG CYS 22 G CYS 22 1_555 G SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 G SG CYS 149 G CYS 149 1_555 G SG CYS 204 G CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf15 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf16 H SG CYS 149 H CYS 149 1_555 H SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 I SG CYS 22 I CYS 22 1_555 I SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf18 I SG CYS 149 I CYS 149 1_555 I SG CYS 204 I CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf19 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf20 J SG CYS 149 J CYS 149 1_555 J SG CYS 204 J CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf21 K SG CYS 22 K CYS 22 1_555 K SG CYS 90 K CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf22 K SG CYS 137 K CYS 137 1_555 K SG CYS 196 K CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf23 L SG CYS 22 L CYS 22 1_555 L SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 L SG CYS 137 L CYS 137 1_555 L SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf25 M SG CYS 22 M CYS 22 1_555 M SG CYS 90 M CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf26 M SG CYS 137 M CYS 137 1_555 M SG CYS 196 M CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf27 N SG CYS 22 N CYS 22 1_555 N SG CYS 90 N CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf28 O SG CYS 22 O CYS 22 1_555 O SG CYS 90 O CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf29 O SG CYS 137 O CYS 137 1_555 O SG CYS 196 O CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 B ND2 ASN 185 B ASN 185 1_555 S C1 NAG . B NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale2 C ND2 ASN 185 C ASN 185 1_555 X C1 NAG . C NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale3 E ND2 ASN 185 E ASN 185 1_555 CA C1 NAG . E NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 334 n n 
C1B O1B LMT sing 335 n n 
C1B O5B LMT sing 336 n n 
C1B H1B LMT sing 337 n n 
C2B C3B LMT sing 338 n n 
C2B O2B LMT sing 339 n n 
C2B H2B LMT sing 340 n n 
C3B C4B LMT sing 341 n n 
C3B O3B LMT sing 342 n n 
C3B H3B LMT sing 343 n n 
C4B C5B LMT sing 344 n n 
C4B O4' LMT sing 345 n n 
C4B H4B LMT sing 346 n n 
C5B C6B LMT sing 347 n n 
C5B O5B LMT sing 348 n n 
C5B H5B LMT sing 349 n n 
C6B O6B LMT sing 350 n n 
C6B "H6'2" LMT sing 351 n n 
C6B "H6'1" LMT sing 352 n n 
O1B C4' LMT sing 353 n n 
O2B H2O1 LMT sing 354 n n 
O3B H3O1 LMT sing 355 n n 
O4' H4O1 LMT sing 356 n n 
O6B H6B LMT sing 357 n n 
C1' C2' LMT sing 358 n n 
C1' O1' LMT sing 359 n n 
C1' O5' LMT sing 360 n n 
C1' H1' LMT sing 361 n n 
C2' C3' LMT sing 362 n n 
C2' O2' LMT sing 363 n n 
C2' H2' LMT sing 364 n n 
C3' C4' LMT sing 365 n n 
C3' O3' LMT sing 366 n n 
C3' H3' LMT sing 367 n n 
C4' C5' LMT sing 368 n n 
C4' H4' LMT sing 369 n n 
C5' C6' LMT sing 370 n n 
C5' O5' LMT sing 371 n n 
C5' H5' LMT sing 372 n n 
C6' O6' LMT sing 373 n n 
C6' H6D LMT sing 374 n n 
C6' H6E LMT sing 375 n n 
O1' C1 LMT sing 376 n n 
O2' H2O2 LMT sing 377 n n 
O3' H3O2 LMT sing 378 n n 
O6' H6' LMT sing 379 n n 
C1 C2 LMT sing 380 n n 
C1 H12 LMT sing 381 n n 
C1 H11 LMT sing 382 n n 
C2 C3 LMT sing 383 n n 
C2 H22 LMT sing 384 n n 
C2 H21 LMT sing 385 n n 
C3 C4 LMT sing 386 n n 
C3 H32 LMT sing 387 n n 
C3 H31 LMT sing 388 n n 
C4 C5 LMT sing 389 n n 
C4 H42 LMT sing 390 n n 
C4 H41 LMT sing 391 n n 
C5 C6 LMT sing 392 n n 
C5 H52 LMT sing 393 n n 
C5 H51 LMT sing 394 n n 
C6 C7 LMT sing 395 n n 
C6 H62 LMT sing 396 n n 
C6 H61 LMT sing 397 n n 
C7 C8 LMT sing 398 n n 
C7 H72 LMT sing 399 n n 
C7 H71 LMT sing 400 n n 
C8 C9 LMT sing 401 n n 
C8 H82 LMT sing 402 n n 
C8 H81 LMT sing 403 n n 
C9 C10 LMT sing 404 n n 
C9 H92 LMT sing 405 n n 
C9 H91 LMT sing 406 n n 
C10 C11 LMT sing 407 n n 
C10 H102 LMT sing 408 n n 
C10 H101 LMT sing 409 n n 
C11 C12 LMT sing 410 n n 
C11 H112 LMT sing 411 n n 
C11 H111 LMT sing 412 n n 
C12 H123 LMT sing 413 n n 
C12 H122 LMT sing 414 n n 
C12 H121 LMT sing 415 n n 
#
_atom_sites.entry_id                     3RI5 
_atom_sites.fract_transf_matrix[1][1]    0.006458 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 4 IVM A 1 349 1 IVM IVM . 
Q 5 LMT A 1 350 1 LMT LMT . 
R 5 LMT A 1 351 1 LMT LMT . 
S 6 NAG B 1 400 400 NAG NAG . 
T 4 IVM B 1 349 1 IVM IVM . 
U 5 LMT B 1 350 1 LMT LMT . 
V 7 OCT B 1 351 1 OCT OCT . 
W 8 UND B 1 352 1 UND UND . 
X 6 NAG C 1 400 400 NAG NAG . 
Y 9 CL C 1 349 1 CL CL . 
Z 4 IVM C 1 350 1 IVM IVM . 
AA 4 IVM D 1 349 1 IVM IVM . 
BA 7 OCT D 1 350 1 OCT OCT . 
CA 6 NAG E 1 400 400 NAG NAG . 
DA 4 IVM E 1 349 1 IVM IVM . 
EA 7 OCT E 1 350 1 OCT OCT . 
FA 10 RI5 E 1 351 1 RI5 RI5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . U 5 22.892 117.711 8.798 1 176.04 ? C1B LMT 350 B 1 
HETATM 2 C C2B LMT . . . U 5 22.156 119.011 9.19 1 176.04 ? C2B LMT 350 B 1 
HETATM 3 C C3B LMT . . . U 5 22.114 119.96 8.099 1 176.04 ? C3B LMT 350 B 1 
HETATM 4 C C4B LMT . . . U 5 23.403 120.224 7.56 1 176.04 ? C4B LMT 350 B 1 
HETATM 5 C C5B LMT . . . U 5 24.183 118.965 7.221 1 176.04 ? C5B LMT 350 B 1 
HETATM 6 C C6B LMT . . . U 5 25.599 119.29 6.797 1 176.04 ? C6B LMT 350 B 1 
HETATM 7 O O1B LMT . . . U 5 22.189 116.899 7.872 1 176.04 ? O1B LMT 350 B 1 
HETATM 8 O O2B LMT . . . U 5 20.838 118.786 9.559 1 176.04 ? O2B LMT 350 B 1 
HETATM 9 O O3B LMT . . . U 5 21.69 121.194 8.646 1 176.04 ? O3B LMT 350 B 1 
HETATM 10 O O4' LMT . . . U 5 23.23 120.952 6.386 1 176.04 ? O4' LMT 350 B 1 
HETATM 11 O O5B LMT . . . U 5 24.174 117.977 8.312 1 176.04 ? O5B LMT 350 B 1 
HETATM 12 O O6B LMT . . . U 5 25.765 120.171 5.734 1 176.04 ? O6B LMT 350 B 1 
HETATM 13 C C1' LMT . . . U 5 19.651 113.686 8.296 1 176.04 ? C1' LMT 350 B 1 
HETATM 14 C C2' LMT . . . U 5 19.066 115.068 8.131 1 176.04 ? C2' LMT 350 B 1 
HETATM 15 C C3' LMT . . . U 5 20.074 116.051 7.706 1 176.04 ? C3' LMT 350 B 1 
HETATM 16 C C4' LMT . . . U 5 21.226 116.048 8.521 1 176.04 ? C4' LMT 350 B 1 
HETATM 17 C C5' LMT . . . U 5 21.8 114.666 8.667 1 176.04 ? C5' LMT 350 B 1 
HETATM 18 C C6' LMT . . . U 5 22.994 114.562 9.59 1 176.04 ? C6' LMT 350 B 1 
HETATM 19 O O1' LMT . . . U 5 18.683 112.815 8.818 1 176.04 ? O1' LMT 350 B 1 
HETATM 20 O O2' LMT . . . U 5 18.107 115.035 7.149 1 176.04 ? O2' LMT 350 B 1 
HETATM 21 O O3' LMT . . . U 5 19.418 117.274 7.828 1 176.04 ? O3' LMT 350 B 1 
HETATM 22 O O5' LMT . . . U 5 20.779 113.69 9.113 1 176.04 ? O5' LMT 350 B 1 
HETATM 23 O O6' LMT . . . U 5 23.206 113.356 10.224 1 176.04 ? O6' LMT 350 B 1 
HETATM 24 C C1 LMT . . . U 5 19.013 111.454 9.031 1 176.04 ? C1 LMT 350 B 1 
HETATM 25 C C2 LMT . . . U 5 17.9 110.41 8.826 1 176.04 ? C2 LMT 350 B 1 
HETATM 26 C C3 LMT . . . U 5 18.327 109.01 8.396 1 176.04 ? C3 LMT 350 B 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#