data_3RIB
#
_model_server_result.job_id            5h_ndccARSn0mTVsJ6T59A 
_model_server_result.datetime_utc      '2024-11-09 02:11:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":446}' 
#
_entry.id    3RIB 
#
_exptl.entry_id    3RIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.95 
_cell.angle_gamma         90 
_cell.entry_id            3RIB 
_cell.length_a            194.56 
_cell.length_b            57.185 
_cell.length_c            96.607 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,T 1 1 
B,N,O,P,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 C ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 D ZN ZN . A ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 D ZN ZN . A ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 C ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 C ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 D ZN ZN . A ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 D ZN ZN . A ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 E ZN ZN . A ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 E ZN ZN . A ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 E ZN ZN . A ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 E ZN ZN . A ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc13 B SG CYS 52 B CYS 52 1_555 N ZN ZN . B ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc14 B SG CYS 55 B CYS 55 1_555 N ZN ZN . B ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc15 B SG CYS 65 B CYS 65 1_555 O ZN ZN . B ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc16 B SG CYS 68 B CYS 68 1_555 O ZN ZN . B ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc17 B SG CYS 74 B CYS 74 1_555 N ZN ZN . B ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc18 B SG CYS 78 B CYS 78 1_555 N ZN ZN . B ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc19 B NE2 HIS 86 B HIS 86 1_555 O ZN ZN . B ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc20 B SG CYS 90 B CYS 90 1_555 O ZN ZN . B ZN 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc21 B SG CYS 209 B CYS 209 1_555 P ZN ZN . B ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc22 B SG CYS 262 B CYS 262 1_555 P ZN ZN . B ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc23 B SG CYS 264 B CYS 264 1_555 P ZN ZN . B ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc24 B SG CYS 267 B CYS 267 1_555 P ZN ZN . B ZN 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 338 n n 
S O2 SO4 doub 339 n n 
S O3 SO4 sing 340 n n 
S O4 SO4 sing 341 n n 
#
_atom_sites.entry_id                     3RIB 
_atom_sites.fract_transf_matrix[1][1]    0.00514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001277 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017487 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 442 4 ZN ZN . 
D 2 ZN A 1 443 5 ZN ZN . 
E 2 ZN A 1 444 6 ZN ZN . 
F 3 SAH A 1 445 100 SAH SAH . 
G 4 SO4 A 1 446 2 SO4 SO4 . 
H 4 SO4 A 1 447 4 SO4 SO4 . 
I 4 SO4 A 1 448 5 SO4 SO4 . 
J 4 SO4 A 1 449 6 SO4 SO4 . 
K 4 SO4 A 1 450 7 SO4 SO4 . 
L 4 SO4 A 1 451 9 SO4 SO4 . 
M 4 SO4 A 1 452 10 SO4 SO4 . 
N 2 ZN B 1 442 1 ZN ZN . 
O 2 ZN B 1 443 2 ZN ZN . 
P 2 ZN B 1 444 3 ZN ZN . 
Q 3 SAH B 1 445 100 SAH SAH . 
R 4 SO4 B 1 446 1 SO4 SO4 . 
S 4 SO4 B 1 447 3 SO4 SO4 . 
T 5 HOH A 1 453 10 HOH HOH . 
T 5 HOH A 2 454 12 HOH HOH . 
T 5 HOH A 3 455 13 HOH HOH . 
T 5 HOH A 4 456 14 HOH HOH . 
T 5 HOH A 5 457 15 HOH HOH . 
T 5 HOH A 6 458 16 HOH HOH . 
T 5 HOH A 7 459 17 HOH HOH . 
T 5 HOH A 8 460 18 HOH HOH . 
T 5 HOH A 9 461 19 HOH HOH . 
T 5 HOH A 10 462 20 HOH HOH . 
T 5 HOH A 11 463 22 HOH HOH . 
T 5 HOH A 12 464 23 HOH HOH . 
T 5 HOH A 13 465 24 HOH HOH . 
T 5 HOH A 14 466 25 HOH HOH . 
T 5 HOH A 15 467 26 HOH HOH . 
T 5 HOH A 16 468 27 HOH HOH . 
T 5 HOH A 17 469 28 HOH HOH . 
T 5 HOH A 18 470 30 HOH HOH . 
T 5 HOH A 19 471 31 HOH HOH . 
T 5 HOH A 20 472 32 HOH HOH . 
T 5 HOH A 21 473 33 HOH HOH . 
T 5 HOH A 22 474 35 HOH HOH . 
T 5 HOH A 23 475 36 HOH HOH . 
T 5 HOH A 24 476 37 HOH HOH . 
T 5 HOH A 25 477 38 HOH HOH . 
T 5 HOH A 26 478 39 HOH HOH . 
T 5 HOH A 27 479 40 HOH HOH . 
T 5 HOH A 28 480 41 HOH HOH . 
T 5 HOH A 29 481 42 HOH HOH . 
T 5 HOH A 30 482 43 HOH HOH . 
T 5 HOH A 31 483 44 HOH HOH . 
T 5 HOH A 32 484 45 HOH HOH . 
T 5 HOH A 33 485 46 HOH HOH . 
T 5 HOH A 34 486 49 HOH HOH . 
T 5 HOH A 35 487 3 HOH HOH . 
T 5 HOH A 36 488 4 HOH HOH . 
T 5 HOH A 37 489 5 HOH HOH . 
T 5 HOH A 38 490 6 HOH HOH . 
T 5 HOH A 39 491 9 HOH HOH . 
U 5 HOH B 1 448 8 HOH HOH . 
U 5 HOH B 2 449 11 HOH HOH . 
U 5 HOH B 3 450 21 HOH HOH . 
U 5 HOH B 4 451 29 HOH HOH . 
U 5 HOH B 5 452 34 HOH HOH . 
U 5 HOH B 6 453 47 HOH HOH . 
U 5 HOH B 7 454 48 HOH HOH . 
U 5 HOH B 8 455 1 HOH HOH . 
U 5 HOH B 9 456 2 HOH HOH . 
U 5 HOH B 10 457 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . R 4 14.755 -67.899 50.301 1 101 ? S SO4 446 B 1 
HETATM 2 O O1 SO4 . . . R 4 15.493 -67.908 49.04 1 100.9 ? O1 SO4 446 B 1 
HETATM 3 O O2 SO4 . . . R 4 13.325 -68.035 50.035 1 100.9 ? O2 SO4 446 B 1 
HETATM 4 O O3 SO4 . . . R 4 15.207 -69.01 51.134 1 101.02 ? O3 SO4 446 B 1 
HETATM 5 O O4 SO4 . . . R 4 14.993 -66.638 50.999 1 101.09 ? O4 SO4 446 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#