data_3RIF
#
_model_server_result.job_id            jZH5jF_z3mGJ4gTLNwyeHg 
_model_server_result.datetime_utc      '2024-11-05 06:56:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":400}' 
#
_entry.id    3RIF 
#
_exptl.entry_id    3RIF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RIF 
_cell.length_a            155.442 
_cell.length_b            155.442 
_cell.length_c            575.354 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 Y N N 
? 8 CA N N 
? 8 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 A CYS 130 1_555 A SG CYS 144 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 191 A CYS 191 1_555 A SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 191 B CYS 191 1_555 B SG CYS 202 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 191 C CYS 191 1_555 C SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 D SG CYS 130 D CYS 130 1_555 D SG CYS 144 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 D SG CYS 191 D CYS 191 1_555 D SG CYS 202 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 E SG CYS 191 E CYS 191 1_555 E SG CYS 202 E CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf12 G SG CYS 22 G CYS 22 1_555 G SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf13 G SG CYS 149 G CYS 149 1_555 G SG CYS 204 G CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf15 H SG CYS 149 H CYS 149 1_555 H SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 I SG CYS 22 I CYS 22 1_555 I SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 I SG CYS 149 I CYS 149 1_555 I SG CYS 204 I CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf18 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf19 J SG CYS 149 J CYS 149 1_555 J SG CYS 204 J CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf20 K SG CYS 22 K CYS 22 1_555 K SG CYS 90 K CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf21 K SG CYS 137 K CYS 137 1_555 K SG CYS 196 K CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf22 L SG CYS 22 L CYS 22 1_555 L SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf23 L SG CYS 137 L CYS 137 1_555 L SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf24 M SG CYS 22 M CYS 22 1_555 M SG CYS 90 M CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
disulf ? disulf25 M SG CYS 137 M CYS 137 1_555 M SG CYS 196 M CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf26 N SG CYS 22 N CYS 22 1_555 N SG CYS 90 N CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf27 O SG CYS 22 O CYS 22 1_555 O SG CYS 90 O CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf28 O SG CYS 137 O CYS 137 1_555 O SG CYS 196 O CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 B ND2 ASN 185 B ASN 185 1_555 Y C1 NAG . B NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale2 C ND2 ASN 185 C ASN 185 1_555 CA C1 NAG . C NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale3 E ND2 ASN 185 E ASN 185 1_555 JA C1 NAG . E NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 459 n n 
C1 O1 NAG sing 460 n n 
C1 O5 NAG sing 461 n n 
C1 H1 NAG sing 462 n n 
C2 C3 NAG sing 463 n n 
C2 N2 NAG sing 464 n n 
C2 H2 NAG sing 465 n n 
C3 C4 NAG sing 466 n n 
C3 O3 NAG sing 467 n n 
C3 H3 NAG sing 468 n n 
C4 C5 NAG sing 469 n n 
C4 O4 NAG sing 470 n n 
C4 H4 NAG sing 471 n n 
C5 C6 NAG sing 472 n n 
C5 O5 NAG sing 473 n n 
C5 H5 NAG sing 474 n n 
C6 O6 NAG sing 475 n n 
C6 H61 NAG sing 476 n n 
C6 H62 NAG sing 477 n n 
C7 C8 NAG sing 478 n n 
C7 N2 NAG sing 479 n n 
C7 O7 NAG doub 480 n n 
C8 H81 NAG sing 481 n n 
C8 H82 NAG sing 482 n n 
C8 H83 NAG sing 483 n n 
N2 HN2 NAG sing 484 n n 
O1 HO1 NAG sing 485 n n 
O3 HO3 NAG sing 486 n n 
O4 HO4 NAG sing 487 n n 
O6 HO6 NAG sing 488 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3RIF 
_atom_sites.fract_transf_matrix[1][1]    0.006433 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 4 GLU A 1 401 401 GLU GLU . 
Q 5 IVM A 1 402 1 IVM IVM . 
R 5 IVM A 1 403 1 IVM IVM . 
S 6 LMT A 1 404 1 LMT LMT . 
T 6 LMT A 1 405 1 LMT LMT . 
U 4 GLU B 1 401 401 GLU GLU . 
V 7 CL B 1 402 1 CL CL . 
W 5 IVM B 1 403 1 IVM IVM . 
X 6 LMT B 1 404 1 LMT LMT . 
Y 8 NAG B 1 400 400 NAG NAG . 
Z 9 OCT B 1 405 1 OCT OCT . 
AA 10 UND B 1 406 1 UND UND . 
BA 4 GLU C 1 401 401 GLU GLU . 
CA 8 NAG C 1 400 400 NAG NAG . 
DA 4 GLU D 1 401 401 GLU GLU . 
EA 5 IVM D 1 402 1 IVM IVM . 
FA 9 OCT D 1 403 1 OCT OCT . 
GA 4 GLU E 1 401 401 GLU GLU . 
HA 5 IVM E 1 402 1 IVM IVM . 
IA 9 OCT E 1 403 1 OCT OCT . 
JA 8 NAG E 1 400 400 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . JA 8 -16.813 87.693 68.266 1 175.57 ? C1 NAG 400 E 1 
HETATM 2 C C2 NAG . . . JA 8 -17.94 86.699 67.965 1 175.84 ? C2 NAG 400 E 1 
HETATM 3 C C3 NAG . . . JA 8 -18.814 87.23 66.832 1 176.2 ? C3 NAG 400 E 1 
HETATM 4 C C4 NAG . . . JA 8 -19.339 88.614 67.205 1 177.76 ? C4 NAG 400 E 1 
HETATM 5 C C5 NAG . . . JA 8 -18.21 89.554 67.651 1 177.5 ? C5 NAG 400 E 1 
HETATM 6 C C6 NAG . . . JA 8 -18.776 90.834 68.264 1 179.37 ? C6 NAG 400 E 1 
HETATM 7 C C7 NAG . . . JA 8 -16.372 85.019 66.999 1 173.05 ? C7 NAG 400 E 1 
HETATM 8 C C8 NAG . . . JA 8 -16.563 84.267 65.713 1 172.16 ? C8 NAG 400 E 1 
HETATM 9 N N2 NAG . . . JA 8 -17.483 85.341 67.67 1 174.57 ? N2 NAG 400 E 1 
HETATM 10 O O3 NAG . . . JA 8 -19.888 86.344 66.591 1 176.7 ? O3 NAG 400 E 1 
HETATM 11 O O4 NAG . . . JA 8 -20.035 89.161 66.099 1 178.11 ? O4 NAG 400 E 1 
HETATM 12 O O5 NAG . . . JA 8 -17.347 88.962 68.61 1 177.04 ? O5 NAG 400 E 1 
HETATM 13 O O6 NAG . . . JA 8 -19.695 91.43 67.375 1 180.1 ? O6 NAG 400 E 1 
HETATM 14 O O7 NAG . . . JA 8 -15.234 85.285 67.387 1 172.53 ? O7 NAG 400 E 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           395 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#