data_3RIN # _model_server_result.job_id jXiBkcp1oIHxjfLnDe6VGw _model_server_result.datetime_utc '2024-10-20 20:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3RIN # _exptl.entry_id 3RIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-cyclopropyl-4-methyl-3-(2'-oxo-1',2'-dihydrospiro[cyclopentane-1,3'-indol]-6'-yl)benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RIN _cell.length_a 45.11 _cell.length_b 86.62 _cell.length_c 123.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H24 N2 O2' _chem_comp.formula_weight 360.449 _chem_comp.id I2O _chem_comp.mon_nstd_flag . _chem_comp.name "N-cyclopropyl-4-methyl-3-(2'-oxo-1',2'-dihydrospiro[cyclopentane-1,3'-indol]-6'-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB I2O doub 152 n y CAA CAF I2O sing 153 n y CAB CAC I2O sing 154 n y CAB CAG I2O sing 155 n n CAC CAD I2O doub 156 n y CAC CAN I2O sing 157 n y CAD CAE I2O sing 158 n y CAE CAF I2O doub 159 n y CAE CAH I2O sing 160 n n CAH NAI I2O sing 161 n n CAH OAM I2O doub 162 n n NAI CAJ I2O sing 163 n n CAJ CAK I2O sing 164 n n CAJ CAL I2O sing 165 n n CAK CAL I2O sing 166 n n CAN CAO I2O doub 167 n y CAN CAS I2O sing 168 n y CAO CAP I2O sing 169 n y CAP CAQ I2O doub 170 n y CAP NAT I2O sing 171 n n CAQ CAR I2O sing 172 n y CAQ CAV I2O sing 173 n n CAR CAS I2O doub 174 n y NAT CAU I2O sing 175 n n CAU CAV I2O sing 176 n n CAU OAW I2O doub 177 n n CAV CAX I2O sing 178 n n CAV CBA I2O sing 179 n n CAX CAY I2O sing 180 n n CAY CAZ I2O sing 181 n n CAZ CBA I2O sing 182 n n CAA HAA I2O sing 183 n n CAD HAD I2O sing 184 n n CAF HAF I2O sing 185 n n CAG HAG I2O sing 186 n n CAG HAGA I2O sing 187 n n CAG HAGB I2O sing 188 n n NAI HNAI I2O sing 189 n n CAJ HAJ I2O sing 190 n n CAK HAK I2O sing 191 n n CAK HAKA I2O sing 192 n n CAL HAL I2O sing 193 n n CAL HALA I2O sing 194 n n CAO HAO I2O sing 195 n n CAR HAR I2O sing 196 n n CAS HAS I2O sing 197 n n NAT HNAT I2O sing 198 n n CAX HAX I2O sing 199 n n CAX HAXA I2O sing 200 n n CAY HAY I2O sing 201 n n CAY HAYA I2O sing 202 n n CAZ HAZ I2O sing 203 n n CAZ HAZA I2O sing 204 n n CBA HBA I2O sing 205 n n CBA HBAA I2O sing 206 n n # _atom_sites.entry_id 3RIN _atom_sites.fract_transf_matrix[1][1] 0.022168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I2O A 1 401 1 I2O I2O . C 3 HOH A 1 501 2 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 14 HOH HOH . C 3 HOH A 13 513 15 HOH HOH . C 3 HOH A 14 514 16 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 20 HOH HOH . C 3 HOH A 17 517 23 HOH HOH . C 3 HOH A 18 518 24 HOH HOH . C 3 HOH A 19 519 26 HOH HOH . C 3 HOH A 20 520 28 HOH HOH . C 3 HOH A 21 521 29 HOH HOH . C 3 HOH A 22 522 30 HOH HOH . C 3 HOH A 23 523 31 HOH HOH . C 3 HOH A 24 524 32 HOH HOH . C 3 HOH A 25 525 33 HOH HOH . C 3 HOH A 26 526 35 HOH HOH . C 3 HOH A 27 527 36 HOH HOH . C 3 HOH A 28 528 37 HOH HOH . C 3 HOH A 29 529 38 HOH HOH . C 3 HOH A 30 530 39 HOH HOH . C 3 HOH A 31 531 40 HOH HOH . C 3 HOH A 32 532 41 HOH HOH . C 3 HOH A 33 533 42 HOH HOH . C 3 HOH A 34 534 43 HOH HOH . C 3 HOH A 35 535 45 HOH HOH . C 3 HOH A 36 536 46 HOH HOH . C 3 HOH A 37 537 47 HOH HOH . C 3 HOH A 38 538 48 HOH HOH . C 3 HOH A 39 539 49 HOH HOH . C 3 HOH A 40 540 50 HOH HOH . C 3 HOH A 41 541 51 HOH HOH . C 3 HOH A 42 542 52 HOH HOH . C 3 HOH A 43 543 53 HOH HOH . C 3 HOH A 44 544 54 HOH HOH . C 3 HOH A 45 545 57 HOH HOH . C 3 HOH A 46 546 58 HOH HOH . C 3 HOH A 47 547 59 HOH HOH . C 3 HOH A 48 548 60 HOH HOH . C 3 HOH A 49 549 61 HOH HOH . C 3 HOH A 50 550 62 HOH HOH . C 3 HOH A 51 551 63 HOH HOH . C 3 HOH A 52 552 66 HOH HOH . C 3 HOH A 53 553 67 HOH HOH . C 3 HOH A 54 554 68 HOH HOH . C 3 HOH A 55 555 69 HOH HOH . C 3 HOH A 56 556 70 HOH HOH . C 3 HOH A 57 557 71 HOH HOH . C 3 HOH A 58 558 72 HOH HOH . C 3 HOH A 59 559 74 HOH HOH . C 3 HOH A 60 560 75 HOH HOH . C 3 HOH A 61 561 79 HOH HOH . C 3 HOH A 62 562 80 HOH HOH . C 3 HOH A 63 563 81 HOH HOH . C 3 HOH A 64 564 84 HOH HOH . C 3 HOH A 65 565 85 HOH HOH . C 3 HOH A 66 566 86 HOH HOH . C 3 HOH A 67 567 88 HOH HOH . C 3 HOH A 68 568 89 HOH HOH . C 3 HOH A 69 569 91 HOH HOH . C 3 HOH A 70 570 93 HOH HOH . C 3 HOH A 71 571 96 HOH HOH . C 3 HOH A 72 572 98 HOH HOH . C 3 HOH A 73 573 99 HOH HOH . C 3 HOH A 74 574 100 HOH HOH . C 3 HOH A 75 575 103 HOH HOH . C 3 HOH A 76 576 104 HOH HOH . C 3 HOH A 77 577 105 HOH HOH . C 3 HOH A 78 578 107 HOH HOH . C 3 HOH A 79 579 108 HOH HOH . C 3 HOH A 80 580 109 HOH HOH . C 3 HOH A 81 581 110 HOH HOH . C 3 HOH A 82 582 114 HOH HOH . C 3 HOH A 83 583 115 HOH HOH . C 3 HOH A 84 584 117 HOH HOH . C 3 HOH A 85 585 118 HOH HOH . C 3 HOH A 86 586 119 HOH HOH . C 3 HOH A 87 587 120 HOH HOH . C 3 HOH A 88 588 123 HOH HOH . C 3 HOH A 89 589 133 HOH HOH . C 3 HOH A 90 590 134 HOH HOH . C 3 HOH A 91 591 135 HOH HOH . C 3 HOH A 92 592 168 HOH HOH . C 3 HOH A 93 593 186 HOH HOH . C 3 HOH A 94 594 187 HOH HOH . C 3 HOH A 95 595 188 HOH HOH . C 3 HOH A 96 596 189 HOH HOH . C 3 HOH A 97 597 203 HOH HOH . C 3 HOH A 98 598 205 HOH HOH . C 3 HOH A 99 599 213 HOH HOH . C 3 HOH A 100 600 218 HOH HOH . C 3 HOH A 101 601 220 HOH HOH . C 3 HOH A 102 602 225 HOH HOH . C 3 HOH A 103 603 226 HOH HOH . C 3 HOH A 104 604 227 HOH HOH . C 3 HOH A 105 605 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA I2O . . . B 2 6.716 30.391 30.907 1 25.52 ? CAA I2O 401 A 1 HETATM 2 C CAB I2O . . . B 2 5.481 31.016 31.231 1 27.47 ? CAB I2O 401 A 1 HETATM 3 C CAC I2O . . . B 2 4.32 30.703 30.491 1 30.17 ? CAC I2O 401 A 1 HETATM 4 C CAD I2O . . . B 2 4.429 29.766 29.433 1 30.9 ? CAD I2O 401 A 1 HETATM 5 C CAE I2O . . . B 2 5.637 29.105 29.105 1 27.83 ? CAE I2O 401 A 1 HETATM 6 C CAF I2O . . . B 2 6.798 29.466 29.858 1 31.32 ? CAF I2O 401 A 1 HETATM 7 C CAG I2O . . . B 2 5.415 32.047 32.383 1 22.56 ? CAG I2O 401 A 1 HETATM 8 C CAH I2O . . . B 2 5.695 28.128 27.894 1 29.03 ? CAH I2O 401 A 1 HETATM 9 N NAI I2O . . . B 2 6.604 27.149 27.853 1 30.7 ? NAI I2O 401 A 1 HETATM 10 C CAJ I2O . . . B 2 6.648 26.306 26.674 1 29.58 ? CAJ I2O 401 A 1 HETATM 11 C CAK I2O . . . B 2 7.064 27.044 25.393 1 29.27 ? CAK I2O 401 A 1 HETATM 12 C CAL I2O . . . B 2 8.039 26.059 26.035 1 29.75 ? CAL I2O 401 A 1 HETATM 13 O OAM I2O . . . B 2 4.985 28.314 26.917 1 31.04 ? OAM I2O 401 A 1 HETATM 14 C CAN I2O . . . B 2 3.032 31.299 30.731 1 30.54 ? CAN I2O 401 A 1 HETATM 15 C CAO I2O . . . B 2 2.858 32.615 30.322 1 28.65 ? CAO I2O 401 A 1 HETATM 16 C CAP I2O . . . B 2 1.666 33.311 30.461 1 29.67 ? CAP I2O 401 A 1 HETATM 17 C CAQ I2O . . . B 2 0.564 32.662 31.012 1 32 ? CAQ I2O 401 A 1 HETATM 18 C CAR I2O . . . B 2 0.684 31.3 31.427 1 34.23 ? CAR I2O 401 A 1 HETATM 19 C CAS I2O . . . B 2 1.918 30.626 31.274 1 31.51 ? CAS I2O 401 A 1 HETATM 20 N NAT I2O . . . B 2 1.394 34.577 30.108 1 30.97 ? NAT I2O 401 A 1 HETATM 21 C CAU I2O . . . B 2 0.107 34.874 30.362 1 33.91 ? CAU I2O 401 A 1 HETATM 22 C CAV I2O . . . B 2 -0.605 33.705 30.993 1 33.96 ? CAV I2O 401 A 1 HETATM 23 O OAW I2O . . . B 2 -0.443 35.934 30.091 1 32.72 ? OAW I2O 401 A 1 HETATM 24 C CAX I2O . . . B 2 -1.25 34.047 32.357 1 35.29 ? CAX I2O 401 A 1 HETATM 25 C CAY I2O . . . B 2 -2.669 34.463 31.937 1 38.54 ? CAY I2O 401 A 1 HETATM 26 C CAZ I2O . . . B 2 -3.039 33.396 30.928 1 39.03 ? CAZ I2O 401 A 1 HETATM 27 C CBA I2O . . . B 2 -1.783 33.277 30.047 1 37.35 ? CBA I2O 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #