data_3RIP
#
_model_server_result.job_id            jBImHRvAUuYJxLbYNGhfrQ 
_model_server_result.datetime_utc      '2024-11-26 07:45:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":678}' 
#
_entry.id    3RIP 
#
_exptl.entry_id    3RIP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RIP 
_cell.length_a            214.95 
_cell.length_b            214.95 
_cell.length_c            128.66 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             494 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              494 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             589 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              589 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.125 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 250 n n 
C1 H1C1 MRD sing 251 n n 
C1 H1C2 MRD sing 252 n n 
C1 H1C3 MRD sing 253 n n 
C2 O2 MRD sing 254 n n 
C2 CM MRD sing 255 n n 
C2 C3 MRD sing 256 n n 
O2 H2 MRD sing 257 n n 
CM HMC1 MRD sing 258 n n 
CM HMC2 MRD sing 259 n n 
CM HMC3 MRD sing 260 n n 
C3 C4 MRD sing 261 n n 
C3 H3C1 MRD sing 262 n n 
C3 H3C2 MRD sing 263 n n 
C4 O4 MRD sing 264 n n 
C4 C5 MRD sing 265 n n 
C4 H4 MRD sing 266 n n 
O4 HA MRD sing 267 n n 
C5 H5C1 MRD sing 268 n n 
C5 H5C2 MRD sing 269 n n 
C5 H5C3 MRD sing 270 n n 
#
_atom_sites.entry_id                     3RIP 
_atom_sites.fract_transf_matrix[1][1]    0.004652 
_atom_sites.fract_transf_matrix[1][2]    0.002686 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MRD A 1 678 675 MRD MRD . 
C 3 GOL A 1 679 676 GOL GOL . 
D 3 GOL A 1 680 677 GOL GOL . 
E 3 GOL A 1 681 678 GOL GOL . 
F 3 GOL A 1 682 679 GOL GOL . 
G 3 GOL A 1 683 680 GOL GOL . 
H 3 GOL A 1 684 681 GOL GOL . 
I 3 GOL A 1 685 682 GOL GOL . 
J 3 GOL A 1 686 683 GOL GOL . 
K 4 HOH A 1 687 687 HOH HOH . 
K 4 HOH A 2 688 688 HOH HOH . 
K 4 HOH A 3 689 689 HOH HOH . 
K 4 HOH A 4 690 690 HOH HOH . 
K 4 HOH A 5 691 691 HOH HOH . 
K 4 HOH A 6 692 692 HOH HOH . 
K 4 HOH A 7 693 693 HOH HOH . 
K 4 HOH A 8 694 694 HOH HOH . 
K 4 HOH A 9 695 695 HOH HOH . 
K 4 HOH A 10 696 696 HOH HOH . 
K 4 HOH A 11 697 697 HOH HOH . 
K 4 HOH A 12 698 698 HOH HOH . 
K 4 HOH A 13 699 699 HOH HOH . 
K 4 HOH A 14 700 700 HOH HOH . 
K 4 HOH A 15 701 701 HOH HOH . 
K 4 HOH A 16 702 702 HOH HOH . 
K 4 HOH A 17 703 703 HOH HOH . 
K 4 HOH A 18 704 704 HOH HOH . 
K 4 HOH A 19 705 705 HOH HOH . 
K 4 HOH A 20 706 706 HOH HOH . 
K 4 HOH A 21 707 707 HOH HOH . 
K 4 HOH A 22 708 708 HOH HOH . 
K 4 HOH A 23 709 709 HOH HOH . 
K 4 HOH A 24 710 710 HOH HOH . 
K 4 HOH A 25 711 711 HOH HOH . 
K 4 HOH A 26 712 712 HOH HOH . 
K 4 HOH A 27 713 713 HOH HOH . 
K 4 HOH A 28 714 714 HOH HOH . 
K 4 HOH A 29 715 715 HOH HOH . 
K 4 HOH A 30 716 716 HOH HOH . 
K 4 HOH A 31 717 717 HOH HOH . 
K 4 HOH A 32 718 718 HOH HOH . 
K 4 HOH A 33 719 719 HOH HOH . 
K 4 HOH A 34 720 720 HOH HOH . 
K 4 HOH A 35 721 721 HOH HOH . 
K 4 HOH A 36 722 722 HOH HOH . 
K 4 HOH A 37 723 723 HOH HOH . 
K 4 HOH A 38 724 724 HOH HOH . 
K 4 HOH A 39 725 725 HOH HOH . 
K 4 HOH A 40 726 726 HOH HOH . 
K 4 HOH A 41 727 727 HOH HOH . 
K 4 HOH A 42 728 728 HOH HOH . 
K 4 HOH A 43 729 729 HOH HOH . 
K 4 HOH A 44 730 730 HOH HOH . 
K 4 HOH A 45 731 731 HOH HOH . 
K 4 HOH A 46 732 732 HOH HOH . 
K 4 HOH A 47 733 733 HOH HOH . 
K 4 HOH A 48 734 734 HOH HOH . 
K 4 HOH A 49 735 735 HOH HOH . 
K 4 HOH A 50 736 736 HOH HOH . 
K 4 HOH A 51 737 737 HOH HOH . 
K 4 HOH A 52 738 738 HOH HOH . 
K 4 HOH A 53 739 739 HOH HOH . 
K 4 HOH A 54 740 740 HOH HOH . 
K 4 HOH A 55 741 741 HOH HOH . 
K 4 HOH A 56 742 742 HOH HOH . 
K 4 HOH A 57 743 743 HOH HOH . 
K 4 HOH A 58 744 744 HOH HOH . 
K 4 HOH A 59 745 745 HOH HOH . 
K 4 HOH A 60 746 746 HOH HOH . 
K 4 HOH A 61 747 747 HOH HOH . 
K 4 HOH A 62 748 748 HOH HOH . 
K 4 HOH A 63 749 749 HOH HOH . 
K 4 HOH A 64 750 750 HOH HOH . 
K 4 HOH A 65 751 751 HOH HOH . 
K 4 HOH A 66 752 752 HOH HOH . 
K 4 HOH A 67 753 753 HOH HOH . 
K 4 HOH A 68 754 754 HOH HOH . 
K 4 HOH A 69 755 755 HOH HOH . 
K 4 HOH A 70 756 756 HOH HOH . 
K 4 HOH A 71 757 757 HOH HOH . 
K 4 HOH A 72 758 758 HOH HOH . 
K 4 HOH A 73 759 759 HOH HOH . 
K 4 HOH A 74 760 760 HOH HOH . 
K 4 HOH A 75 761 761 HOH HOH . 
K 4 HOH A 76 762 762 HOH HOH . 
K 4 HOH A 77 763 763 HOH HOH . 
K 4 HOH A 78 764 764 HOH HOH . 
K 4 HOH A 79 765 765 HOH HOH . 
K 4 HOH A 80 766 766 HOH HOH . 
K 4 HOH A 81 767 767 HOH HOH . 
K 4 HOH A 82 768 768 HOH HOH . 
K 4 HOH A 83 769 769 HOH HOH . 
K 4 HOH A 84 770 770 HOH HOH . 
K 4 HOH A 85 771 771 HOH HOH . 
K 4 HOH A 86 772 772 HOH HOH . 
K 4 HOH A 87 773 773 HOH HOH . 
K 4 HOH A 88 774 774 HOH HOH . 
K 4 HOH A 89 775 775 HOH HOH . 
K 4 HOH A 90 776 776 HOH HOH . 
K 4 HOH A 91 777 777 HOH HOH . 
K 4 HOH A 92 778 778 HOH HOH . 
K 4 HOH A 93 779 779 HOH HOH . 
K 4 HOH A 94 780 780 HOH HOH . 
K 4 HOH A 95 781 781 HOH HOH . 
K 4 HOH A 96 782 782 HOH HOH . 
K 4 HOH A 97 783 783 HOH HOH . 
K 4 HOH A 98 784 784 HOH HOH . 
K 4 HOH A 99 785 785 HOH HOH . 
K 4 HOH A 100 786 786 HOH HOH . 
K 4 HOH A 101 787 787 HOH HOH . 
K 4 HOH A 102 788 788 HOH HOH . 
K 4 HOH A 103 789 789 HOH HOH . 
K 4 HOH A 104 790 790 HOH HOH . 
K 4 HOH A 105 791 791 HOH HOH . 
K 4 HOH A 106 792 792 HOH HOH . 
K 4 HOH A 107 793 793 HOH HOH . 
K 4 HOH A 108 794 794 HOH HOH . 
K 4 HOH A 109 795 795 HOH HOH . 
K 4 HOH A 110 796 796 HOH HOH . 
K 4 HOH A 111 797 797 HOH HOH . 
K 4 HOH A 112 798 798 HOH HOH . 
K 4 HOH A 113 799 799 HOH HOH . 
K 4 HOH A 114 800 800 HOH HOH . 
K 4 HOH A 115 801 801 HOH HOH . 
K 4 HOH A 116 802 802 HOH HOH . 
K 4 HOH A 117 803 803 HOH HOH . 
K 4 HOH A 118 804 804 HOH HOH . 
K 4 HOH A 119 805 805 HOH HOH . 
K 4 HOH A 120 806 806 HOH HOH . 
K 4 HOH A 121 807 807 HOH HOH . 
K 4 HOH A 122 808 808 HOH HOH . 
K 4 HOH A 123 809 809 HOH HOH . 
K 4 HOH A 124 810 810 HOH HOH . 
K 4 HOH A 125 811 811 HOH HOH . 
K 4 HOH A 126 812 812 HOH HOH . 
K 4 HOH A 127 813 813 HOH HOH . 
K 4 HOH A 128 814 814 HOH HOH . 
K 4 HOH A 129 815 815 HOH HOH . 
K 4 HOH A 130 816 816 HOH HOH . 
K 4 HOH A 131 817 817 HOH HOH . 
K 4 HOH A 132 818 818 HOH HOH . 
K 4 HOH A 133 819 819 HOH HOH . 
K 4 HOH A 134 820 820 HOH HOH . 
K 4 HOH A 135 821 821 HOH HOH . 
K 4 HOH A 136 822 822 HOH HOH . 
K 4 HOH A 137 823 823 HOH HOH . 
K 4 HOH A 138 824 824 HOH HOH . 
K 4 HOH A 139 825 825 HOH HOH . 
K 4 HOH A 140 826 826 HOH HOH . 
K 4 HOH A 141 827 827 HOH HOH . 
K 4 HOH A 142 828 828 HOH HOH . 
K 4 HOH A 143 829 829 HOH HOH . 
K 4 HOH A 144 830 830 HOH HOH . 
K 4 HOH A 145 831 831 HOH HOH . 
K 4 HOH A 146 832 832 HOH HOH . 
K 4 HOH A 147 833 833 HOH HOH . 
K 4 HOH A 148 834 834 HOH HOH . 
K 4 HOH A 149 835 835 HOH HOH . 
K 4 HOH A 150 836 836 HOH HOH . 
K 4 HOH A 151 837 837 HOH HOH . 
K 4 HOH A 152 838 838 HOH HOH . 
K 4 HOH A 153 839 839 HOH HOH . 
K 4 HOH A 154 840 840 HOH HOH . 
K 4 HOH A 155 841 841 HOH HOH . 
K 4 HOH A 156 842 842 HOH HOH . 
K 4 HOH A 157 843 843 HOH HOH . 
K 4 HOH A 158 844 844 HOH HOH . 
K 4 HOH A 159 845 845 HOH HOH . 
K 4 HOH A 160 846 846 HOH HOH . 
K 4 HOH A 161 847 847 HOH HOH . 
K 4 HOH A 162 848 848 HOH HOH . 
K 4 HOH A 163 849 849 HOH HOH . 
K 4 HOH A 164 850 850 HOH HOH . 
K 4 HOH A 165 851 851 HOH HOH . 
K 4 HOH A 166 852 852 HOH HOH . 
K 4 HOH A 167 853 853 HOH HOH . 
K 4 HOH A 168 854 854 HOH HOH . 
K 4 HOH A 169 855 855 HOH HOH . 
K 4 HOH A 170 856 856 HOH HOH . 
K 4 HOH A 171 857 857 HOH HOH . 
K 4 HOH A 172 858 858 HOH HOH . 
K 4 HOH A 173 859 859 HOH HOH . 
K 4 HOH A 174 860 860 HOH HOH . 
K 4 HOH A 175 861 861 HOH HOH . 
K 4 HOH A 176 862 862 HOH HOH . 
K 4 HOH A 177 863 863 HOH HOH . 
K 4 HOH A 178 864 864 HOH HOH . 
K 4 HOH A 179 865 865 HOH HOH . 
K 4 HOH A 180 866 866 HOH HOH . 
K 4 HOH A 181 867 867 HOH HOH . 
K 4 HOH A 182 868 868 HOH HOH . 
K 4 HOH A 183 869 869 HOH HOH . 
K 4 HOH A 184 870 870 HOH HOH . 
K 4 HOH A 185 871 871 HOH HOH . 
K 4 HOH A 186 872 872 HOH HOH . 
K 4 HOH A 187 873 873 HOH HOH . 
K 4 HOH A 188 874 874 HOH HOH . 
K 4 HOH A 189 875 875 HOH HOH . 
K 4 HOH A 190 876 876 HOH HOH . 
K 4 HOH A 191 877 877 HOH HOH . 
K 4 HOH A 192 878 878 HOH HOH . 
K 4 HOH A 193 879 879 HOH HOH . 
K 4 HOH A 194 880 880 HOH HOH . 
K 4 HOH A 195 881 881 HOH HOH . 
K 4 HOH A 196 882 882 HOH HOH . 
K 4 HOH A 197 883 883 HOH HOH . 
K 4 HOH A 198 884 884 HOH HOH . 
K 4 HOH A 199 885 885 HOH HOH . 
K 4 HOH A 200 886 886 HOH HOH . 
K 4 HOH A 201 887 887 HOH HOH . 
K 4 HOH A 202 888 888 HOH HOH . 
K 4 HOH A 203 889 889 HOH HOH . 
K 4 HOH A 204 890 890 HOH HOH . 
K 4 HOH A 205 891 891 HOH HOH . 
K 4 HOH A 206 892 892 HOH HOH . 
K 4 HOH A 207 893 893 HOH HOH . 
K 4 HOH A 208 894 894 HOH HOH . 
K 4 HOH A 209 895 895 HOH HOH . 
K 4 HOH A 210 896 896 HOH HOH . 
K 4 HOH A 211 897 897 HOH HOH . 
K 4 HOH A 212 898 898 HOH HOH . 
K 4 HOH A 213 899 684 HOH HOH . 
K 4 HOH A 214 900 685 HOH HOH . 
K 4 HOH A 215 901 686 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . B 2 54.719 105.228 20.089 1 68.68 ? C1 MRD 678 A 1 
HETATM 2 C C2 MRD . . . B 2 53.745 105.863 21.139 1 83.4 ? C2 MRD 678 A 1 
HETATM 3 O O2 MRD . . . B 2 53.224 104.783 22.016 1 66.58 ? O2 MRD 678 A 1 
HETATM 4 C CM MRD . . . B 2 54.493 106.865 22.052 1 70.08 ? CM MRD 678 A 1 
HETATM 5 C C3 MRD . . . B 2 52.583 106.598 20.409 1 67.3 ? C3 MRD 678 A 1 
HETATM 6 C C4 MRD . . . B 2 51.224 106.7 21.169 1 77.62 ? C4 MRD 678 A 1 
HETATM 7 O O4 MRD . . . B 2 51.242 107.762 22.158 1 75.07 ? O4 MRD 678 A 1 
HETATM 8 C C5 MRD . . . B 2 50.743 105.407 21.862 1 56.68 ? C5 MRD 678 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#