data_3RJ0 # _model_server_result.job_id zQHKfJWMHNGPrSfOLb248g _model_server_result.datetime_utc '2024-11-15 13:57:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3RJ0 # _exptl.entry_id 3RJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.42 _cell.angle_gamma 90 _cell.entry_id 3RJ0 _cell.length_a 175.17 _cell.length_b 67.236 _cell.length_c 119.246 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2 NAG 2 n B NAG 2 B 2 NAG A 3 NAG 2 n B BMA 3 B 3 BMA A 4 BMA 2 n B MAN 4 B 4 MAN A 5 MAN 2 n C NAG 1 C 1 NAG A 7 NAG 2 n C NAG 2 C 2 NAG A 8 NAG 2 n C BMA 3 C 3 BMA A 9 BMA 2 n C MAN 4 C 4 MAN A 10 MAN 2 n D NAG 1 D 1 NAG A 12 NAG 2 n D NAG 2 D 2 NAG A 13 NAG 2 n D BMA 3 D 3 BMA A 14 BMA 2 n D MAN 4 D 4 MAN A 15 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 62 1_555 A SG CYS 44 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 95 A CYS 120 1_555 A SG CYS 122 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 174 A CYS 199 1_555 A SG CYS 196 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 219 A CYS 244 1_555 A SG CYS 243 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 290 A CYS 315 1_555 A SG CYS 314 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 386 A CYS 411 1_555 A SG CYS 414 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 584 A CYS 609 1_555 A SG CYS 610 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 738 A CYS 763 1_555 A SG CYS 745 A CYS 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 E C1 NAG . A NAG 1 1_555 A ND2 ASN 87 A ASN 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 F C1 NAG . A NAG 6 1_555 A ND2 ASN 208 A ASN 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 G C1 NAG . A NAG 11 1_555 A ND2 ASN 326 A ASN 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 129 A ASN 154 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 250 A ASN 275 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 A ND2 ASN 520 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3RJ0 _atom_sites.fract_transf_matrix[1][1] 0.005709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003487 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1 1 NAG NAG . F 3 NAG A 1 6 6 NAG NAG . G 3 NAG A 1 11 11 NAG NAG . H 4 BLD A 1 17 17 BLD BLD . I 5 HOH A 1 16 16 HOH HOH . I 5 HOH A 2 18 18 HOH HOH . I 5 HOH A 3 19 19 HOH HOH . I 5 HOH A 4 20 20 HOH HOH . I 5 HOH A 5 21 21 HOH HOH . I 5 HOH A 6 22 22 HOH HOH . I 5 HOH A 7 23 23 HOH HOH . I 5 HOH A 8 24 24 HOH HOH . I 5 HOH A 9 25 25 HOH HOH . I 5 HOH A 10 798 1 HOH HOH . I 5 HOH A 11 799 2 HOH HOH . I 5 HOH A 12 800 3 HOH HOH . I 5 HOH A 13 801 4 HOH HOH . I 5 HOH A 14 802 5 HOH HOH . I 5 HOH A 15 803 6 HOH HOH . I 5 HOH A 16 804 7 HOH HOH . I 5 HOH A 17 805 8 HOH HOH . I 5 HOH A 18 806 9 HOH HOH . I 5 HOH A 19 807 10 HOH HOH . I 5 HOH A 20 808 11 HOH HOH . I 5 HOH A 21 809 12 HOH HOH . I 5 HOH A 22 810 13 HOH HOH . I 5 HOH A 23 811 14 HOH HOH . I 5 HOH A 24 812 15 HOH HOH . I 5 HOH A 25 813 17 HOH HOH . I 5 HOH A 26 814 26 HOH HOH . I 5 HOH A 27 815 27 HOH HOH . I 5 HOH A 28 816 28 HOH HOH . I 5 HOH A 29 817 29 HOH HOH . I 5 HOH A 30 818 30 HOH HOH . I 5 HOH A 31 819 31 HOH HOH . I 5 HOH A 32 820 32 HOH HOH . I 5 HOH A 33 821 33 HOH HOH . I 5 HOH A 34 822 34 HOH HOH . I 5 HOH A 35 823 35 HOH HOH . I 5 HOH A 36 824 36 HOH HOH . I 5 HOH A 37 825 37 HOH HOH . I 5 HOH A 38 826 38 HOH HOH . I 5 HOH A 39 827 39 HOH HOH . I 5 HOH A 40 828 40 HOH HOH . I 5 HOH A 41 829 41 HOH HOH . I 5 HOH A 42 830 42 HOH HOH . I 5 HOH A 43 831 43 HOH HOH . I 5 HOH A 44 832 44 HOH HOH . I 5 HOH A 45 833 45 HOH HOH . I 5 HOH A 46 834 46 HOH HOH . I 5 HOH A 47 835 47 HOH HOH . I 5 HOH A 48 836 48 HOH HOH . I 5 HOH A 49 837 49 HOH HOH . I 5 HOH A 50 838 50 HOH HOH . I 5 HOH A 51 839 51 HOH HOH . I 5 HOH A 52 840 52 HOH HOH . I 5 HOH A 53 841 53 HOH HOH . I 5 HOH A 54 842 54 HOH HOH . I 5 HOH A 55 843 55 HOH HOH . I 5 HOH A 56 844 56 HOH HOH . I 5 HOH A 57 845 57 HOH HOH . I 5 HOH A 58 846 58 HOH HOH . I 5 HOH A 59 847 59 HOH HOH . I 5 HOH A 60 848 60 HOH HOH . I 5 HOH A 61 849 61 HOH HOH . I 5 HOH A 62 850 62 HOH HOH . I 5 HOH A 63 851 63 HOH HOH . I 5 HOH A 64 852 64 HOH HOH . I 5 HOH A 65 853 65 HOH HOH . I 5 HOH A 66 854 66 HOH HOH . I 5 HOH A 67 855 68 HOH HOH . I 5 HOH A 68 856 69 HOH HOH . I 5 HOH A 69 857 70 HOH HOH . I 5 HOH A 70 858 72 HOH HOH . I 5 HOH A 71 859 73 HOH HOH . I 5 HOH A 72 860 75 HOH HOH . I 5 HOH A 73 861 76 HOH HOH . I 5 HOH A 74 862 77 HOH HOH . I 5 HOH A 75 863 78 HOH HOH . I 5 HOH A 76 864 79 HOH HOH . I 5 HOH A 77 865 80 HOH HOH . I 5 HOH A 78 866 81 HOH HOH . I 5 HOH A 79 867 82 HOH HOH . I 5 HOH A 80 868 84 HOH HOH . I 5 HOH A 81 869 86 HOH HOH . I 5 HOH A 82 870 88 HOH HOH . I 5 HOH A 83 871 89 HOH HOH . I 5 HOH A 84 872 90 HOH HOH . I 5 HOH A 85 873 91 HOH HOH . I 5 HOH A 86 874 92 HOH HOH . I 5 HOH A 87 875 93 HOH HOH . I 5 HOH A 88 876 94 HOH HOH . I 5 HOH A 89 877 95 HOH HOH . I 5 HOH A 90 878 96 HOH HOH . I 5 HOH A 91 879 97 HOH HOH . I 5 HOH A 92 880 99 HOH HOH . I 5 HOH A 93 881 100 HOH HOH . I 5 HOH A 94 882 101 HOH HOH . I 5 HOH A 95 883 102 HOH HOH . I 5 HOH A 96 884 103 HOH HOH . I 5 HOH A 97 885 104 HOH HOH . I 5 HOH A 98 886 105 HOH HOH . I 5 HOH A 99 887 106 HOH HOH . I 5 HOH A 100 888 107 HOH HOH . I 5 HOH A 101 889 108 HOH HOH . I 5 HOH A 102 890 110 HOH HOH . I 5 HOH A 103 891 111 HOH HOH . I 5 HOH A 104 892 113 HOH HOH . I 5 HOH A 105 893 114 HOH HOH . I 5 HOH A 106 894 115 HOH HOH . I 5 HOH A 107 895 116 HOH HOH . I 5 HOH A 108 896 117 HOH HOH . I 5 HOH A 109 897 118 HOH HOH . I 5 HOH A 110 898 119 HOH HOH . I 5 HOH A 111 899 120 HOH HOH . I 5 HOH A 112 900 121 HOH HOH . I 5 HOH A 113 901 122 HOH HOH . I 5 HOH A 114 902 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 57.14 86.634 -7.392 1 81.9 ? C1 NAG 1 A 1 HETATM 2 C C2 NAG . . . E 3 55.869 86.594 -8.246 1 88.78 ? C2 NAG 1 A 1 HETATM 3 C C3 NAG . . . E 3 55.229 87.98 -8.364 1 97.98 ? C3 NAG 1 A 1 HETATM 4 C C4 NAG . . . E 3 55.016 88.571 -6.973 1 97.94 ? C4 NAG 1 A 1 HETATM 5 C C5 NAG . . . E 3 56.279 88.459 -6.119 1 97.38 ? C5 NAG 1 A 1 HETATM 6 C C6 NAG . . . E 3 55.992 88.913 -4.689 1 99.5 ? C6 NAG 1 A 1 HETATM 7 C C7 NAG . . . E 3 55.695 84.813 -9.877 1 87.01 ? C7 NAG 1 A 1 HETATM 8 C C8 NAG . . . E 3 56.225 84.216 -11.151 1 81.93 ? C8 NAG 1 A 1 HETATM 9 N N2 NAG . . . E 3 56.14 86.028 -9.555 1 87.29 ? N2 NAG 1 A 1 HETATM 10 O O3 NAG . . . E 3 53.99 87.916 -9.05 1 101.19 ? O3 NAG 1 A 1 HETATM 11 O O4 NAG . . . E 3 54.631 89.925 -7.077 1 97.37 ? O4 NAG 1 A 1 HETATM 12 O O5 NAG . . . E 3 56.8 87.136 -6.112 1 89.78 ? O5 NAG 1 A 1 HETATM 13 O O6 NAG . . . E 3 54.789 88.328 -4.232 1 102.12 ? O6 NAG 1 A 1 HETATM 14 O O7 NAG . . . E 3 54.892 84.193 -9.175 1 87.62 ? O7 NAG 1 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #