data_3RJD # _model_server_result.job_id E5QV-AK5zwt5Bal_WmeEzg _model_server_result.datetime_utc '2024-12-26 23:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 3RJD # _exptl.entry_id 3RJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RJD _cell.length_a 92.828 _cell.length_b 92.828 _cell.length_c 90.763 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 4 2 1 MAN NAG C1 O1 . O4 HO4 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG S 242 NAG 2 n B NAG 2 B 2 NAG S 243 NAG 2 n B MAN 3 B 3 MAN A 285 MAN 3 n C NAG 1 C 1 NAG S 10 NAG 3 n C NAG 2 C 2 NAG A 11 NAG 3 n C MAN 3 C 3 MAN A 12 MAN 3 n C FUC 4 C 4 FUC D 999 FUC 4 n D NAG 1 D 1 NAG C 367 NAG 4 n D MAN 2 D 2 MAN C 368 MAN 5 n E NAG 1 E 1 NAG B 366 NAG 5 n E NAG 2 E 2 NAG B 369 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 43 1_555 A SG CYS 65 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 104 A CYS 124 1_555 A SG CYS 148 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 192 A CYS 212 1_555 A SG CYS 240 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 F C1 NAG . A NAG 4 1_555 A ND2 ASN 58 A ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 G C1 NAG . A NAG 8 1_555 A ND2 ASN 175 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale3 A ND2 ASN 39 A ASN 59 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A ND2 ASN 132 A ASN 152 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 139 A ASN 159 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale6 A ND2 ASN 143 A ASN 163 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 314 n n O22 H22 P33 sing 315 n n C21 C20 P33 sing 316 n n C21 H211 P33 sing 317 n n C21 H212 P33 sing 318 n n C20 O19 P33 sing 319 n n C20 H201 P33 sing 320 n n C20 H202 P33 sing 321 n n O19 C18 P33 sing 322 n n C18 C17 P33 sing 323 n n C18 H181 P33 sing 324 n n C18 H182 P33 sing 325 n n C17 O16 P33 sing 326 n n C17 H171 P33 sing 327 n n C17 H172 P33 sing 328 n n O16 C15 P33 sing 329 n n C15 C14 P33 sing 330 n n C15 H151 P33 sing 331 n n C15 H152 P33 sing 332 n n C14 O13 P33 sing 333 n n C14 H141 P33 sing 334 n n C14 H142 P33 sing 335 n n O13 C12 P33 sing 336 n n C12 C11 P33 sing 337 n n C12 H121 P33 sing 338 n n C12 H122 P33 sing 339 n n C11 O10 P33 sing 340 n n C11 H111 P33 sing 341 n n C11 H112 P33 sing 342 n n O10 C9 P33 sing 343 n n C9 C8 P33 sing 344 n n C9 H91 P33 sing 345 n n C9 H92 P33 sing 346 n n C8 O7 P33 sing 347 n n C8 H81 P33 sing 348 n n C8 H82 P33 sing 349 n n O7 C6 P33 sing 350 n n C6 C5 P33 sing 351 n n C6 H61 P33 sing 352 n n C6 H62 P33 sing 353 n n C5 O4 P33 sing 354 n n C5 H51 P33 sing 355 n n C5 H52 P33 sing 356 n n O4 C3 P33 sing 357 n n C3 C2 P33 sing 358 n n C3 H31 P33 sing 359 n n C3 H32 P33 sing 360 n n C2 O1 P33 sing 361 n n C2 H21 P33 sing 362 n n C2 H22A P33 sing 363 n n O1 HO1 P33 sing 364 n n # _atom_sites.entry_id 3RJD _atom_sites.fract_transf_matrix[1][1] 0.010773 _atom_sites.fract_transf_matrix[1][2] 0.00622 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 4 4 NAG NAG . G 6 NAG A 1 8 8 NAG NAG . H 7 P33 A 1 1 1 P33 15P . I 8 HOH A 1 2 2 HOH HOH . I 8 HOH A 2 3 3 HOH HOH . I 8 HOH A 3 5 5 HOH HOH . I 8 HOH A 4 6 6 HOH HOH . I 8 HOH A 5 7 7 HOH HOH . I 8 HOH A 6 9 9 HOH HOH . I 8 HOH A 7 14 14 HOH HOH . I 8 HOH A 8 15 15 HOH HOH . I 8 HOH A 9 17 17 HOH HOH . I 8 HOH A 10 18 18 HOH HOH . I 8 HOH A 11 19 19 HOH HOH . I 8 HOH A 12 286 1 HOH HOH . I 8 HOH A 13 287 4 HOH HOH . I 8 HOH A 14 288 8 HOH HOH . I 8 HOH A 15 289 10 HOH HOH . I 8 HOH A 16 290 11 HOH HOH . I 8 HOH A 17 291 12 HOH HOH . I 8 HOH A 18 292 21 HOH HOH . I 8 HOH A 19 293 22 HOH HOH . I 8 HOH A 20 294 23 HOH HOH . I 8 HOH A 21 295 24 HOH HOH . I 8 HOH A 22 296 25 HOH HOH . I 8 HOH A 23 297 26 HOH HOH . I 8 HOH A 24 298 27 HOH HOH . I 8 HOH A 25 299 28 HOH HOH . I 8 HOH A 26 300 29 HOH HOH . I 8 HOH A 27 301 31 HOH HOH . I 8 HOH A 28 302 32 HOH HOH . I 8 HOH A 29 303 33 HOH HOH . I 8 HOH A 30 304 34 HOH HOH . I 8 HOH A 31 305 36 HOH HOH . I 8 HOH A 32 306 37 HOH HOH . I 8 HOH A 33 307 38 HOH HOH . I 8 HOH A 34 308 39 HOH HOH . I 8 HOH A 35 309 40 HOH HOH . I 8 HOH A 36 310 41 HOH HOH . I 8 HOH A 37 311 42 HOH HOH . I 8 HOH A 38 312 43 HOH HOH . I 8 HOH A 39 313 44 HOH HOH . I 8 HOH A 40 314 45 HOH HOH . I 8 HOH A 41 315 46 HOH HOH . I 8 HOH A 42 316 47 HOH HOH . I 8 HOH A 43 317 49 HOH HOH . I 8 HOH A 44 318 50 HOH HOH . I 8 HOH A 45 319 51 HOH HOH . I 8 HOH A 46 320 52 HOH HOH . I 8 HOH A 47 321 53 HOH HOH . I 8 HOH A 48 322 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . H 7 1.104 39.764 -12.561 1 20 ? O22 P33 1 A 1 HETATM 2 C C21 P33 . . . H 7 0.429 40.255 -11.459 1 20 ? C21 P33 1 A 1 HETATM 3 C C20 P33 . . . H 7 1.597 40.628 -10.638 1 20 ? C20 P33 1 A 1 HETATM 4 O O19 P33 . . . H 7 2.377 39.45 -10.623 1 20 ? O19 P33 1 A 1 HETATM 5 C C18 P33 . . . H 7 3.648 39.577 -9.986 1 20 ? C18 P33 1 A 1 HETATM 6 C C17 P33 . . . H 7 3.792 38.773 -8.736 1 20 ? C17 P33 1 A 1 HETATM 7 O O16 P33 . . . H 7 4.786 39.356 -7.965 1 20 ? O16 P33 1 A 1 HETATM 8 C C15 P33 . . . H 7 4.843 39.009 -6.578 1 20 ? C15 P33 1 A 1 HETATM 9 C C14 P33 . . . H 7 6.266 38.565 -6.246 1 20 ? C14 P33 1 A 1 HETATM 10 O O13 P33 . . . H 7 6.978 39.151 -5.164 1 20 ? O13 P33 1 A 1 HETATM 11 C C12 P33 . . . H 7 8.339 38.917 -5.532 1 20 ? C12 P33 1 A 1 HETATM 12 C C11 P33 . . . H 7 9.27 38.798 -4.346 1 20 ? C11 P33 1 A 1 HETATM 13 O O10 P33 . . . H 7 10.493 39.452 -4.567 1 20 ? O10 P33 1 A 1 HETATM 14 C C9 P33 . . . H 7 11.239 38.677 -5.422 1 20 ? C9 P33 1 A 1 HETATM 15 C C8 P33 . . . H 7 12.663 39.051 -5.184 1 20 ? C8 P33 1 A 1 HETATM 16 O O7 P33 . . . H 7 13.285 37.826 -5.463 1 20 ? O7 P33 1 A 1 HETATM 17 C C6 P33 . . . H 7 13.656 37.069 -4.331 1 20 ? C6 P33 1 A 1 HETATM 18 C C5 P33 . . . H 7 13.914 35.675 -4.848 1 20 ? C5 P33 1 A 1 HETATM 19 O O4 P33 . . . H 7 14.704 35.641 -6.045 1 20 ? O4 P33 1 A 1 HETATM 20 C C3 P33 . . . H 7 13.952 35.454 -7.201 1 20 ? C3 P33 1 A 1 HETATM 21 C C2 P33 . . . H 7 14.6 34.327 -7.928 1 20 ? C2 P33 1 A 1 HETATM 22 O O1 P33 . . . H 7 14.124 34.26 -9.271 1 20 ? O1 P33 1 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #