data_3RJV # _model_server_result.job_id WIvHPDGQXBSDSn-aPc6MqQ _model_server_result.datetime_utc '2025-01-02 16:00:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":232}' # _entry.id 3RJV # _exptl.entry_id 3RJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RJV _cell.length_a 81.508 _cell.length_b 81.508 _cell.length_c 83.343 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 A CYS 211 1_555 A SG CYS 203 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? covale ? covale1 A C GLN 128 A GLN 144 1_555 A N MSE 129 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 129 A MSE 145 1_555 A N LEU 130 A LEU 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLY 169 A GLY 185 1_555 A N MSE 170 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C MSE 170 A MSE 186 1_555 A N MSE 171 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 171 A MSE 187 1_555 A N PHE 172 A PHE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3RJV _atom_sites.fract_transf_matrix[1][1] 0.012269 _atom_sites.fract_transf_matrix[1][2] 0.007083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 229 229 EDO EDO . C 2 EDO A 1 230 230 EDO EDO . D 2 EDO A 1 231 231 EDO EDO . E 2 EDO A 1 232 232 EDO EDO . F 2 EDO A 1 233 233 EDO EDO . G 2 EDO A 1 234 234 EDO EDO . H 2 EDO A 1 235 235 EDO EDO . I 3 HOH A 1 236 236 HOH HOH . I 3 HOH A 2 237 237 HOH HOH . I 3 HOH A 3 238 238 HOH HOH . I 3 HOH A 4 239 239 HOH HOH . I 3 HOH A 5 240 240 HOH HOH . I 3 HOH A 6 241 241 HOH HOH . I 3 HOH A 7 242 242 HOH HOH . I 3 HOH A 8 243 243 HOH HOH . I 3 HOH A 9 244 244 HOH HOH . I 3 HOH A 10 245 245 HOH HOH . I 3 HOH A 11 246 246 HOH HOH . I 3 HOH A 12 247 247 HOH HOH . I 3 HOH A 13 248 248 HOH HOH . I 3 HOH A 14 249 249 HOH HOH . I 3 HOH A 15 250 250 HOH HOH . I 3 HOH A 16 251 251 HOH HOH . I 3 HOH A 17 252 252 HOH HOH . I 3 HOH A 18 253 253 HOH HOH . I 3 HOH A 19 254 254 HOH HOH . I 3 HOH A 20 255 255 HOH HOH . I 3 HOH A 21 256 256 HOH HOH . I 3 HOH A 22 257 257 HOH HOH . I 3 HOH A 23 258 258 HOH HOH . I 3 HOH A 24 259 259 HOH HOH . I 3 HOH A 25 260 260 HOH HOH . I 3 HOH A 26 261 261 HOH HOH . I 3 HOH A 27 262 262 HOH HOH . I 3 HOH A 28 263 263 HOH HOH . I 3 HOH A 29 264 264 HOH HOH . I 3 HOH A 30 265 265 HOH HOH . I 3 HOH A 31 266 266 HOH HOH . I 3 HOH A 32 267 267 HOH HOH . I 3 HOH A 33 268 268 HOH HOH . I 3 HOH A 34 269 269 HOH HOH . I 3 HOH A 35 270 270 HOH HOH . I 3 HOH A 36 271 271 HOH HOH . I 3 HOH A 37 272 272 HOH HOH . I 3 HOH A 38 273 273 HOH HOH . I 3 HOH A 39 274 274 HOH HOH . I 3 HOH A 40 275 275 HOH HOH . I 3 HOH A 41 276 276 HOH HOH . I 3 HOH A 42 277 277 HOH HOH . I 3 HOH A 43 278 278 HOH HOH . I 3 HOH A 44 279 279 HOH HOH . I 3 HOH A 45 280 280 HOH HOH . I 3 HOH A 46 281 281 HOH HOH . I 3 HOH A 47 282 282 HOH HOH . I 3 HOH A 48 283 283 HOH HOH . I 3 HOH A 49 284 284 HOH HOH . I 3 HOH A 50 285 285 HOH HOH . I 3 HOH A 51 286 286 HOH HOH . I 3 HOH A 52 287 287 HOH HOH . I 3 HOH A 53 288 288 HOH HOH . I 3 HOH A 54 289 289 HOH HOH . I 3 HOH A 55 290 290 HOH HOH . I 3 HOH A 56 291 291 HOH HOH . I 3 HOH A 57 292 292 HOH HOH . I 3 HOH A 58 293 293 HOH HOH . I 3 HOH A 59 294 294 HOH HOH . I 3 HOH A 60 295 295 HOH HOH . I 3 HOH A 61 296 296 HOH HOH . I 3 HOH A 62 297 297 HOH HOH . I 3 HOH A 63 298 298 HOH HOH . I 3 HOH A 64 299 299 HOH HOH . I 3 HOH A 65 300 300 HOH HOH . I 3 HOH A 66 301 301 HOH HOH . I 3 HOH A 67 302 302 HOH HOH . I 3 HOH A 68 303 303 HOH HOH . I 3 HOH A 69 304 304 HOH HOH . I 3 HOH A 70 305 305 HOH HOH . I 3 HOH A 71 306 306 HOH HOH . I 3 HOH A 72 307 307 HOH HOH . I 3 HOH A 73 308 308 HOH HOH . I 3 HOH A 74 309 309 HOH HOH . I 3 HOH A 75 310 310 HOH HOH . I 3 HOH A 76 311 311 HOH HOH . I 3 HOH A 77 312 312 HOH HOH . I 3 HOH A 78 313 313 HOH HOH . I 3 HOH A 79 314 314 HOH HOH . I 3 HOH A 80 315 315 HOH HOH . I 3 HOH A 81 316 316 HOH HOH . I 3 HOH A 82 317 317 HOH HOH . I 3 HOH A 83 318 318 HOH HOH . I 3 HOH A 84 319 319 HOH HOH . I 3 HOH A 85 320 320 HOH HOH . I 3 HOH A 86 321 321 HOH HOH . I 3 HOH A 87 322 322 HOH HOH . I 3 HOH A 88 323 323 HOH HOH . I 3 HOH A 89 324 324 HOH HOH . I 3 HOH A 90 325 325 HOH HOH . I 3 HOH A 91 326 326 HOH HOH . I 3 HOH A 92 327 327 HOH HOH . I 3 HOH A 93 328 328 HOH HOH . I 3 HOH A 94 329 329 HOH HOH . I 3 HOH A 95 330 330 HOH HOH . I 3 HOH A 96 331 331 HOH HOH . I 3 HOH A 97 332 332 HOH HOH . I 3 HOH A 98 333 333 HOH HOH . I 3 HOH A 99 334 334 HOH HOH . I 3 HOH A 100 335 335 HOH HOH . I 3 HOH A 101 336 336 HOH HOH . I 3 HOH A 102 337 337 HOH HOH . I 3 HOH A 103 338 338 HOH HOH . I 3 HOH A 104 339 339 HOH HOH . I 3 HOH A 105 340 340 HOH HOH . I 3 HOH A 106 341 341 HOH HOH . I 3 HOH A 107 342 342 HOH HOH . I 3 HOH A 108 343 343 HOH HOH . I 3 HOH A 109 344 344 HOH HOH . I 3 HOH A 110 345 345 HOH HOH . I 3 HOH A 111 346 346 HOH HOH . I 3 HOH A 112 347 347 HOH HOH . I 3 HOH A 113 348 348 HOH HOH . I 3 HOH A 114 349 349 HOH HOH . I 3 HOH A 115 350 350 HOH HOH . I 3 HOH A 116 351 351 HOH HOH . I 3 HOH A 117 352 352 HOH HOH . I 3 HOH A 118 353 353 HOH HOH . I 3 HOH A 119 354 354 HOH HOH . I 3 HOH A 120 355 355 HOH HOH . I 3 HOH A 121 356 356 HOH HOH . I 3 HOH A 122 357 357 HOH HOH . I 3 HOH A 123 358 358 HOH HOH . I 3 HOH A 124 359 359 HOH HOH . I 3 HOH A 125 360 360 HOH HOH . I 3 HOH A 126 361 361 HOH HOH . I 3 HOH A 127 362 362 HOH HOH . I 3 HOH A 128 363 363 HOH HOH . I 3 HOH A 129 364 364 HOH HOH . I 3 HOH A 130 365 365 HOH HOH . I 3 HOH A 131 366 366 HOH HOH . I 3 HOH A 132 367 367 HOH HOH . I 3 HOH A 133 368 368 HOH HOH . I 3 HOH A 134 369 369 HOH HOH . I 3 HOH A 135 370 370 HOH HOH . I 3 HOH A 136 371 371 HOH HOH . I 3 HOH A 137 372 372 HOH HOH . I 3 HOH A 138 373 373 HOH HOH . I 3 HOH A 139 374 374 HOH HOH . I 3 HOH A 140 375 375 HOH HOH . I 3 HOH A 141 376 376 HOH HOH . I 3 HOH A 142 377 377 HOH HOH . I 3 HOH A 143 378 378 HOH HOH . I 3 HOH A 144 379 379 HOH HOH . I 3 HOH A 145 380 380 HOH HOH . I 3 HOH A 146 381 381 HOH HOH . I 3 HOH A 147 382 382 HOH HOH . I 3 HOH A 148 383 383 HOH HOH . I 3 HOH A 149 384 384 HOH HOH . I 3 HOH A 150 385 385 HOH HOH . I 3 HOH A 151 386 386 HOH HOH . I 3 HOH A 152 387 387 HOH HOH . I 3 HOH A 153 388 388 HOH HOH . I 3 HOH A 154 389 389 HOH HOH . I 3 HOH A 155 390 390 HOH HOH . I 3 HOH A 156 391 391 HOH HOH . I 3 HOH A 157 392 392 HOH HOH . I 3 HOH A 158 393 393 HOH HOH . I 3 HOH A 159 394 394 HOH HOH . I 3 HOH A 160 395 395 HOH HOH . I 3 HOH A 161 396 396 HOH HOH . I 3 HOH A 162 397 397 HOH HOH . I 3 HOH A 163 398 398 HOH HOH . I 3 HOH A 164 399 399 HOH HOH . I 3 HOH A 165 400 400 HOH HOH . I 3 HOH A 166 401 401 HOH HOH . I 3 HOH A 167 402 402 HOH HOH . I 3 HOH A 168 403 403 HOH HOH . I 3 HOH A 169 404 404 HOH HOH . I 3 HOH A 170 405 405 HOH HOH . I 3 HOH A 171 406 406 HOH HOH . I 3 HOH A 172 407 407 HOH HOH . I 3 HOH A 173 408 408 HOH HOH . I 3 HOH A 174 409 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . E 2 34.629 20.334 37.158 0.5 35.24 ? C1 EDO 232 A 1 HETATM 2 C C1 EDO . B . E 2 34.558 20.284 37.348 0.5 46.4 ? C1 EDO 232 A 1 HETATM 3 O O1 EDO . A . E 2 33.981 21.003 38.247 0.5 32.88 ? O1 EDO 232 A 1 HETATM 4 O O1 EDO . B . E 2 35.801 19.637 37.037 0.5 46.25 ? O1 EDO 232 A 1 HETATM 5 C C2 EDO . A . E 2 33.584 19.944 36.129 0.5 40.67 ? C2 EDO 232 A 1 HETATM 6 C C2 EDO . B . E 2 33.516 19.917 36.303 0.5 48.56 ? C2 EDO 232 A 1 HETATM 7 O O2 EDO . A . E 2 32.735 18.934 36.674 0.5 42.36 ? O2 EDO 232 A 1 HETATM 8 O O2 EDO . B . E 2 32.708 18.843 36.789 0.5 49.38 ? O2 EDO 232 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #