data_3RK2
#
_model_server_result.job_id            UQL4ylSLbltc5wj4lRu1cw 
_model_server_result.datetime_utc      '2025-03-06 07:48:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":4}' 
#
_entry.id    3RK2 
#
_exptl.entry_id    3RK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         83.38 
_cell.angle_beta          89.94 
_cell.angle_gamma         89.87 
_cell.entry_id            3RK2 
_cell.length_a            27.627 
_cell.length_b            39.769 
_cell.length_c            102.275 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P 1 1 
E,F,G,H,Q,R,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I CA CA . B CA 1 1_555 B OD2 ASP 43 B ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc2 I CA CA . B CA 1 1_555 B OD1 ASP 43 B ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc3 I CA CA . B CA 1 1_555 O O HOH . C HOH 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc4 I CA CA . B CA 1 1_555 G OE2 GLU 11 G GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc5 J CA CA . B CA 4 1_555 B OE2 GLU 40 B GLU 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc6 J CA CA . B CA 4 1_555 B OD1 ASP 43 B ASP 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc7 J CA CA . B CA 4 1_555 G OE2 GLU 11 G GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc8 K CA CA . C CA 2 1_555 C OE2 GLU 11 C GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc9 C OE2 GLU 11 C GLU 13 1_555 L CA CA . C CA 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RK2 
_atom_sites.fract_transf_matrix[1][1]    0.036196 
_atom_sites.fract_transf_matrix[1][2]    -0.000082 
_atom_sites.fract_transf_matrix[1][3]    -0.000029 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025145 
_atom_sites.fract_transf_matrix[2][3]    -0.002918 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 CA B 1 1 1 CA CA . 
J 5 CA B 1 4 4 CA CA . 
K 5 CA C 1 2 2 CA CA . 
L 5 CA C 1 84 84 CA CA . 
M 6 HOH A 1 10 10 HOH HOH . 
M 6 HOH A 2 16 16 HOH HOH . 
M 6 HOH A 3 61 61 HOH HOH . 
N 6 HOH B 1 6 6 HOH HOH . 
N 6 HOH B 2 8 8 HOH HOH . 
N 6 HOH B 3 24 24 HOH HOH . 
N 6 HOH B 4 30 30 HOH HOH . 
N 6 HOH B 5 48 48 HOH HOH . 
N 6 HOH B 6 58 58 HOH HOH . 
O 6 HOH C 1 85 85 HOH HOH . 
O 6 HOH C 2 86 86 HOH HOH . 
O 6 HOH C 3 87 87 HOH HOH . 
O 6 HOH C 4 88 88 HOH HOH . 
O 6 HOH C 5 89 89 HOH HOH . 
O 6 HOH C 6 90 90 HOH HOH . 
O 6 HOH C 7 91 91 HOH HOH . 
O 6 HOH C 8 92 92 HOH HOH . 
O 6 HOH C 9 93 93 HOH HOH . 
O 6 HOH C 10 94 94 HOH HOH . 
O 6 HOH C 11 95 95 HOH HOH . 
P 6 HOH D 1 7 7 HOH HOH . 
P 6 HOH D 2 9 9 HOH HOH . 
P 6 HOH D 3 20 20 HOH HOH . 
P 6 HOH D 4 23 23 HOH HOH . 
P 6 HOH D 5 27 27 HOH HOH . 
P 6 HOH D 6 52 52 HOH HOH . 
Q 6 HOH E 1 62 62 HOH HOH . 
R 6 HOH F 1 12 12 HOH HOH . 
R 6 HOH F 2 22 22 HOH HOH . 
S 6 HOH G 1 2 2 HOH HOH . 
S 6 HOH G 2 84 84 HOH HOH . 
S 6 HOH G 3 85 85 HOH HOH . 
S 6 HOH G 4 86 86 HOH HOH . 
S 6 HOH G 5 87 87 HOH HOH . 
T 6 HOH H 1 33 33 HOH HOH . 
T 6 HOH H 2 38 38 HOH HOH . 
T 6 HOH H 3 50 50 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -0.964 
_atom_site.Cartn_y               -34.98 
_atom_site.Cartn_z               -32.367 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        73.08 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           4 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           402 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#