data_3RKB # _model_server_result.job_id JqCmgiVscIN4OzWMwKK7LA _model_server_result.datetime_utc '2024-11-17 00:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":456}' # _entry.id 3RKB # _exptl.entry_id 3RKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RKB _cell.length_a 53.637 _cell.length_b 71.609 _cell.length_c 72.577 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 124 n n C1 C2 EDO sing 125 n n C1 H11 EDO sing 126 n n C1 H12 EDO sing 127 n n O1 HO1 EDO sing 128 n n C2 O2 EDO sing 129 n n C2 H21 EDO sing 130 n n C2 H22 EDO sing 131 n n O2 HO2 EDO sing 132 n n # _atom_sites.entry_id 3RKB _atom_sites.fract_transf_matrix[1][1] 0.018644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 456 1 EDO EDO . C 3 12Z A 1 457 1 12Z 12Z . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 304 6 HOH HOH . D 4 HOH A 7 305 7 HOH HOH . D 4 HOH A 8 306 8 HOH HOH . D 4 HOH A 9 307 9 HOH HOH . D 4 HOH A 10 308 10 HOH HOH . D 4 HOH A 11 309 11 HOH HOH . D 4 HOH A 12 310 12 HOH HOH . D 4 HOH A 13 311 13 HOH HOH . D 4 HOH A 14 312 14 HOH HOH . D 4 HOH A 15 313 15 HOH HOH . D 4 HOH A 16 314 16 HOH HOH . D 4 HOH A 17 316 18 HOH HOH . D 4 HOH A 18 317 19 HOH HOH . D 4 HOH A 19 318 20 HOH HOH . D 4 HOH A 20 319 21 HOH HOH . D 4 HOH A 21 320 22 HOH HOH . D 4 HOH A 22 321 23 HOH HOH . D 4 HOH A 23 322 24 HOH HOH . D 4 HOH A 24 323 25 HOH HOH . D 4 HOH A 25 324 26 HOH HOH . D 4 HOH A 26 325 27 HOH HOH . D 4 HOH A 27 326 28 HOH HOH . D 4 HOH A 28 327 29 HOH HOH . D 4 HOH A 29 328 30 HOH HOH . D 4 HOH A 30 329 31 HOH HOH . D 4 HOH A 31 330 32 HOH HOH . D 4 HOH A 32 331 33 HOH HOH . D 4 HOH A 33 332 34 HOH HOH . D 4 HOH A 34 333 35 HOH HOH . D 4 HOH A 35 334 36 HOH HOH . D 4 HOH A 36 336 38 HOH HOH . D 4 HOH A 37 337 39 HOH HOH . D 4 HOH A 38 338 40 HOH HOH . D 4 HOH A 39 340 42 HOH HOH . D 4 HOH A 40 341 43 HOH HOH . D 4 HOH A 41 342 44 HOH HOH . D 4 HOH A 42 343 45 HOH HOH . D 4 HOH A 43 344 46 HOH HOH . D 4 HOH A 44 345 47 HOH HOH . D 4 HOH A 45 346 48 HOH HOH . D 4 HOH A 46 347 49 HOH HOH . D 4 HOH A 47 348 50 HOH HOH . D 4 HOH A 48 349 51 HOH HOH . D 4 HOH A 49 350 52 HOH HOH . D 4 HOH A 50 351 53 HOH HOH . D 4 HOH A 51 352 54 HOH HOH . D 4 HOH A 52 354 56 HOH HOH . D 4 HOH A 53 355 57 HOH HOH . D 4 HOH A 54 356 58 HOH HOH . D 4 HOH A 55 357 59 HOH HOH . D 4 HOH A 56 358 60 HOH HOH . D 4 HOH A 57 359 61 HOH HOH . D 4 HOH A 58 361 63 HOH HOH . D 4 HOH A 59 362 64 HOH HOH . D 4 HOH A 60 363 65 HOH HOH . D 4 HOH A 61 365 67 HOH HOH . D 4 HOH A 62 366 68 HOH HOH . D 4 HOH A 63 367 69 HOH HOH . D 4 HOH A 64 368 70 HOH HOH . D 4 HOH A 65 369 71 HOH HOH . D 4 HOH A 66 370 72 HOH HOH . D 4 HOH A 67 371 73 HOH HOH . D 4 HOH A 68 372 74 HOH HOH . D 4 HOH A 69 373 75 HOH HOH . D 4 HOH A 70 374 76 HOH HOH . D 4 HOH A 71 375 77 HOH HOH . D 4 HOH A 72 376 78 HOH HOH . D 4 HOH A 73 377 79 HOH HOH . D 4 HOH A 74 379 81 HOH HOH . D 4 HOH A 75 380 82 HOH HOH . D 4 HOH A 76 381 83 HOH HOH . D 4 HOH A 77 382 84 HOH HOH . D 4 HOH A 78 383 85 HOH HOH . D 4 HOH A 79 384 86 HOH HOH . D 4 HOH A 80 385 87 HOH HOH . D 4 HOH A 81 386 88 HOH HOH . D 4 HOH A 82 389 91 HOH HOH . D 4 HOH A 83 390 92 HOH HOH . D 4 HOH A 84 392 94 HOH HOH . D 4 HOH A 85 393 95 HOH HOH . D 4 HOH A 86 394 96 HOH HOH . D 4 HOH A 87 395 97 HOH HOH . D 4 HOH A 88 396 98 HOH HOH . D 4 HOH A 89 397 99 HOH HOH . D 4 HOH A 90 399 101 HOH HOH . D 4 HOH A 91 400 102 HOH HOH . D 4 HOH A 92 401 103 HOH HOH . D 4 HOH A 93 402 104 HOH HOH . D 4 HOH A 94 403 105 HOH HOH . D 4 HOH A 95 404 106 HOH HOH . D 4 HOH A 96 405 107 HOH HOH . D 4 HOH A 97 406 108 HOH HOH . D 4 HOH A 98 407 109 HOH HOH . D 4 HOH A 99 408 110 HOH HOH . D 4 HOH A 100 409 111 HOH HOH . D 4 HOH A 101 410 112 HOH HOH . D 4 HOH A 102 411 113 HOH HOH . D 4 HOH A 103 413 115 HOH HOH . D 4 HOH A 104 414 116 HOH HOH . D 4 HOH A 105 415 117 HOH HOH . D 4 HOH A 106 416 118 HOH HOH . D 4 HOH A 107 417 119 HOH HOH . D 4 HOH A 108 418 120 HOH HOH . D 4 HOH A 109 419 121 HOH HOH . D 4 HOH A 110 420 122 HOH HOH . D 4 HOH A 111 421 123 HOH HOH . D 4 HOH A 112 422 124 HOH HOH . D 4 HOH A 113 424 126 HOH HOH . D 4 HOH A 114 425 127 HOH HOH . D 4 HOH A 115 428 130 HOH HOH . D 4 HOH A 116 429 131 HOH HOH . D 4 HOH A 117 431 133 HOH HOH . D 4 HOH A 118 433 135 HOH HOH . D 4 HOH A 119 434 136 HOH HOH . D 4 HOH A 120 435 137 HOH HOH . D 4 HOH A 121 436 138 HOH HOH . D 4 HOH A 122 437 139 HOH HOH . D 4 HOH A 123 439 141 HOH HOH . D 4 HOH A 124 441 143 HOH HOH . D 4 HOH A 125 442 144 HOH HOH . D 4 HOH A 126 445 147 HOH HOH . D 4 HOH A 127 447 149 HOH HOH . D 4 HOH A 128 448 150 HOH HOH . D 4 HOH A 129 449 151 HOH HOH . D 4 HOH A 130 450 152 HOH HOH . D 4 HOH A 131 451 153 HOH HOH . D 4 HOH A 132 452 154 HOH HOH . D 4 HOH A 133 453 155 HOH HOH . D 4 HOH A 134 454 156 HOH HOH . D 4 HOH A 135 455 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -77.593 -13.753 -50.886 1 33.34 ? C1 EDO 456 A 1 HETATM 2 O O1 EDO . . . B 2 -77.119 -14.379 -52.076 1 32.06 ? O1 EDO 456 A 1 HETATM 3 C C2 EDO . . . B 2 -77.348 -14.68 -49.702 1 34.09 ? C2 EDO 456 A 1 HETATM 4 O O2 EDO . . . B 2 -75.94 -14.788 -49.461 1 34.86 ? O2 EDO 456 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #