data_3RKJ # _model_server_result.job_id fM3l1FeHornGeLQ_ytKD9A _model_server_result.datetime_utc '2024-11-07 01:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":283}' # _entry.id 3RKJ # _exptl.entry_id 3RKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.96 _cell.angle_gamma 90 _cell.entry_id 3RKJ _cell.length_a 59.712 _cell.length_b 51.113 _cell.length_c 70.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3RKJ _atom_sites.fract_transf_matrix[1][1] 0.016747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 281 281 SO4 SO4 . D 2 SO4 A 1 282 282 SO4 SO4 . E 3 GOL A 1 283 283 GOL GOL . F 2 SO4 B 1 281 281 SO4 SO4 . G 2 SO4 B 1 282 282 SO4 SO4 . H 2 SO4 B 1 283 283 SO4 SO4 . I 4 HOH A 1 1 1 HOH HOH . I 4 HOH A 2 5 5 HOH HOH . I 4 HOH A 3 6 6 HOH HOH . I 4 HOH A 4 7 7 HOH HOH . I 4 HOH A 5 8 8 HOH HOH . I 4 HOH A 6 9 9 HOH HOH . I 4 HOH A 7 10 10 HOH HOH . I 4 HOH A 8 13 13 HOH HOH . I 4 HOH A 9 14 14 HOH HOH . I 4 HOH A 10 15 15 HOH HOH . I 4 HOH A 11 17 17 HOH HOH . I 4 HOH A 12 18 18 HOH HOH . I 4 HOH A 13 21 21 HOH HOH . I 4 HOH A 14 27 27 HOH HOH . I 4 HOH A 15 28 28 HOH HOH . I 4 HOH A 16 31 31 HOH HOH . I 4 HOH A 17 33 33 HOH HOH . I 4 HOH A 18 35 35 HOH HOH . I 4 HOH A 19 271 271 HOH HOH . I 4 HOH A 20 272 272 HOH HOH . I 4 HOH A 21 273 273 HOH HOH . I 4 HOH A 22 274 274 HOH HOH . I 4 HOH A 23 275 275 HOH HOH . I 4 HOH A 24 276 276 HOH HOH . I 4 HOH A 25 277 277 HOH HOH . I 4 HOH A 26 278 278 HOH HOH . I 4 HOH A 27 279 279 HOH HOH . I 4 HOH A 28 280 280 HOH HOH . I 4 HOH A 29 284 284 HOH HOH . I 4 HOH A 30 285 285 HOH HOH . I 4 HOH A 31 286 286 HOH HOH . I 4 HOH A 32 287 287 HOH HOH . I 4 HOH A 33 288 288 HOH HOH . I 4 HOH A 34 289 289 HOH HOH . I 4 HOH A 35 290 290 HOH HOH . I 4 HOH A 36 291 291 HOH HOH . I 4 HOH A 37 292 292 HOH HOH . I 4 HOH A 38 293 293 HOH HOH . I 4 HOH A 39 294 294 HOH HOH . I 4 HOH A 40 295 295 HOH HOH . I 4 HOH A 41 296 296 HOH HOH . I 4 HOH A 42 297 297 HOH HOH . I 4 HOH A 43 298 298 HOH HOH . I 4 HOH A 44 299 299 HOH HOH . I 4 HOH A 45 300 300 HOH HOH . I 4 HOH A 46 301 301 HOH HOH . I 4 HOH A 47 302 302 HOH HOH . I 4 HOH A 48 303 303 HOH HOH . I 4 HOH A 49 304 304 HOH HOH . I 4 HOH A 50 305 305 HOH HOH . I 4 HOH A 51 306 306 HOH HOH . I 4 HOH A 52 307 307 HOH HOH . I 4 HOH A 53 308 308 HOH HOH . I 4 HOH A 54 309 309 HOH HOH . I 4 HOH A 55 310 310 HOH HOH . I 4 HOH A 56 311 311 HOH HOH . I 4 HOH A 57 312 312 HOH HOH . I 4 HOH A 58 313 313 HOH HOH . I 4 HOH A 59 314 314 HOH HOH . I 4 HOH A 60 315 315 HOH HOH . I 4 HOH A 61 316 316 HOH HOH . I 4 HOH A 62 317 317 HOH HOH . I 4 HOH A 63 318 318 HOH HOH . I 4 HOH A 64 319 319 HOH HOH . I 4 HOH A 65 320 320 HOH HOH . I 4 HOH A 66 321 321 HOH HOH . I 4 HOH A 67 322 322 HOH HOH . I 4 HOH A 68 323 323 HOH HOH . I 4 HOH A 69 324 324 HOH HOH . I 4 HOH A 70 325 325 HOH HOH . I 4 HOH A 71 326 326 HOH HOH . I 4 HOH A 72 327 327 HOH HOH . I 4 HOH A 73 328 328 HOH HOH . I 4 HOH A 74 329 329 HOH HOH . I 4 HOH A 75 330 330 HOH HOH . I 4 HOH A 76 331 331 HOH HOH . I 4 HOH A 77 332 332 HOH HOH . I 4 HOH A 78 333 333 HOH HOH . I 4 HOH A 79 334 334 HOH HOH . I 4 HOH A 80 335 335 HOH HOH . I 4 HOH A 81 336 336 HOH HOH . I 4 HOH A 82 337 337 HOH HOH . I 4 HOH A 83 338 338 HOH HOH . I 4 HOH A 84 339 339 HOH HOH . I 4 HOH A 85 341 341 HOH HOH . I 4 HOH A 86 342 342 HOH HOH . I 4 HOH A 87 343 343 HOH HOH . I 4 HOH A 88 344 344 HOH HOH . I 4 HOH A 89 345 345 HOH HOH . I 4 HOH A 90 346 346 HOH HOH . I 4 HOH A 91 347 347 HOH HOH . I 4 HOH A 92 348 348 HOH HOH . I 4 HOH A 93 349 349 HOH HOH . I 4 HOH A 94 350 350 HOH HOH . I 4 HOH A 95 351 351 HOH HOH . I 4 HOH A 96 352 352 HOH HOH . I 4 HOH A 97 353 353 HOH HOH . I 4 HOH A 98 354 354 HOH HOH . I 4 HOH A 99 355 355 HOH HOH . I 4 HOH A 100 356 356 HOH HOH . I 4 HOH A 101 357 357 HOH HOH . I 4 HOH A 102 358 358 HOH HOH . I 4 HOH A 103 359 359 HOH HOH . I 4 HOH A 104 360 360 HOH HOH . I 4 HOH A 105 361 361 HOH HOH . I 4 HOH A 106 362 362 HOH HOH . I 4 HOH A 107 363 363 HOH HOH . I 4 HOH A 108 364 364 HOH HOH . I 4 HOH A 109 365 365 HOH HOH . I 4 HOH A 110 366 366 HOH HOH . I 4 HOH A 111 367 367 HOH HOH . I 4 HOH A 112 368 368 HOH HOH . I 4 HOH A 113 369 369 HOH HOH . I 4 HOH A 114 370 370 HOH HOH . I 4 HOH A 115 371 371 HOH HOH . I 4 HOH A 116 372 372 HOH HOH . I 4 HOH A 117 373 373 HOH HOH . I 4 HOH A 118 374 374 HOH HOH . I 4 HOH A 119 375 375 HOH HOH . I 4 HOH A 120 376 376 HOH HOH . I 4 HOH A 121 377 377 HOH HOH . I 4 HOH A 122 378 378 HOH HOH . I 4 HOH A 123 379 379 HOH HOH . I 4 HOH A 124 380 380 HOH HOH . I 4 HOH A 125 381 381 HOH HOH . I 4 HOH A 126 382 382 HOH HOH . I 4 HOH A 127 383 383 HOH HOH . I 4 HOH A 128 384 384 HOH HOH . I 4 HOH A 129 385 385 HOH HOH . I 4 HOH A 130 386 386 HOH HOH . I 4 HOH A 131 387 387 HOH HOH . I 4 HOH A 132 388 388 HOH HOH . I 4 HOH A 133 389 389 HOH HOH . J 4 HOH B 1 2 2 HOH HOH . J 4 HOH B 2 3 3 HOH HOH . J 4 HOH B 3 4 4 HOH HOH . J 4 HOH B 4 11 11 HOH HOH . J 4 HOH B 5 12 12 HOH HOH . J 4 HOH B 6 16 16 HOH HOH . J 4 HOH B 7 19 19 HOH HOH . J 4 HOH B 8 20 20 HOH HOH . J 4 HOH B 9 22 22 HOH HOH . J 4 HOH B 10 23 23 HOH HOH . J 4 HOH B 11 24 24 HOH HOH . J 4 HOH B 12 25 25 HOH HOH . J 4 HOH B 13 26 26 HOH HOH . J 4 HOH B 14 29 29 HOH HOH . J 4 HOH B 15 30 30 HOH HOH . J 4 HOH B 16 32 32 HOH HOH . J 4 HOH B 17 34 34 HOH HOH . J 4 HOH B 18 271 271 HOH HOH . J 4 HOH B 19 272 272 HOH HOH . J 4 HOH B 20 273 273 HOH HOH . J 4 HOH B 21 274 274 HOH HOH . J 4 HOH B 22 275 275 HOH HOH . J 4 HOH B 23 276 276 HOH HOH . J 4 HOH B 24 277 277 HOH HOH . J 4 HOH B 25 278 278 HOH HOH . J 4 HOH B 26 279 279 HOH HOH . J 4 HOH B 27 280 280 HOH HOH . J 4 HOH B 28 284 284 HOH HOH . J 4 HOH B 29 285 285 HOH HOH . J 4 HOH B 30 286 286 HOH HOH . J 4 HOH B 31 287 287 HOH HOH . J 4 HOH B 32 288 288 HOH HOH . J 4 HOH B 33 289 289 HOH HOH . J 4 HOH B 34 290 290 HOH HOH . J 4 HOH B 35 291 291 HOH HOH . J 4 HOH B 36 292 292 HOH HOH . J 4 HOH B 37 293 293 HOH HOH . J 4 HOH B 38 294 294 HOH HOH . J 4 HOH B 39 295 295 HOH HOH . J 4 HOH B 40 296 296 HOH HOH . J 4 HOH B 41 297 297 HOH HOH . J 4 HOH B 42 298 298 HOH HOH . J 4 HOH B 43 299 299 HOH HOH . J 4 HOH B 44 300 300 HOH HOH . J 4 HOH B 45 301 301 HOH HOH . J 4 HOH B 46 302 302 HOH HOH . J 4 HOH B 47 303 303 HOH HOH . J 4 HOH B 48 304 304 HOH HOH . J 4 HOH B 49 305 305 HOH HOH . J 4 HOH B 50 306 306 HOH HOH . J 4 HOH B 51 307 307 HOH HOH . J 4 HOH B 52 308 308 HOH HOH . J 4 HOH B 53 309 309 HOH HOH . J 4 HOH B 54 310 310 HOH HOH . J 4 HOH B 55 311 311 HOH HOH . J 4 HOH B 56 312 312 HOH HOH . J 4 HOH B 57 313 313 HOH HOH . J 4 HOH B 58 314 314 HOH HOH . J 4 HOH B 59 315 315 HOH HOH . J 4 HOH B 60 316 316 HOH HOH . J 4 HOH B 61 317 317 HOH HOH . J 4 HOH B 62 318 318 HOH HOH . J 4 HOH B 63 319 319 HOH HOH . J 4 HOH B 64 320 320 HOH HOH . J 4 HOH B 65 321 321 HOH HOH . J 4 HOH B 66 322 322 HOH HOH . J 4 HOH B 67 323 323 HOH HOH . J 4 HOH B 68 324 324 HOH HOH . J 4 HOH B 69 325 325 HOH HOH . J 4 HOH B 70 326 326 HOH HOH . J 4 HOH B 71 327 327 HOH HOH . J 4 HOH B 72 328 328 HOH HOH . J 4 HOH B 73 329 329 HOH HOH . J 4 HOH B 74 330 330 HOH HOH . J 4 HOH B 75 331 331 HOH HOH . J 4 HOH B 76 332 332 HOH HOH . J 4 HOH B 77 333 333 HOH HOH . J 4 HOH B 78 334 334 HOH HOH . J 4 HOH B 79 335 335 HOH HOH . J 4 HOH B 80 336 336 HOH HOH . J 4 HOH B 81 337 337 HOH HOH . J 4 HOH B 82 338 338 HOH HOH . J 4 HOH B 83 339 339 HOH HOH . J 4 HOH B 84 340 340 HOH HOH . J 4 HOH B 85 341 341 HOH HOH . J 4 HOH B 86 342 342 HOH HOH . J 4 HOH B 87 343 343 HOH HOH . J 4 HOH B 88 344 344 HOH HOH . J 4 HOH B 89 345 345 HOH HOH . J 4 HOH B 90 346 346 HOH HOH . J 4 HOH B 91 347 347 HOH HOH . J 4 HOH B 92 348 348 HOH HOH . J 4 HOH B 93 349 349 HOH HOH . J 4 HOH B 94 350 350 HOH HOH . J 4 HOH B 95 351 351 HOH HOH . J 4 HOH B 96 352 352 HOH HOH . J 4 HOH B 97 353 353 HOH HOH . J 4 HOH B 98 354 354 HOH HOH . J 4 HOH B 99 355 355 HOH HOH . J 4 HOH B 100 356 356 HOH HOH . J 4 HOH B 101 357 357 HOH HOH . J 4 HOH B 102 358 358 HOH HOH . J 4 HOH B 103 359 359 HOH HOH . J 4 HOH B 104 360 360 HOH HOH . J 4 HOH B 105 361 361 HOH HOH . J 4 HOH B 106 362 362 HOH HOH . J 4 HOH B 107 363 363 HOH HOH . J 4 HOH B 108 364 364 HOH HOH . J 4 HOH B 109 365 365 HOH HOH . J 4 HOH B 110 366 366 HOH HOH . J 4 HOH B 111 367 367 HOH HOH . J 4 HOH B 112 368 368 HOH HOH . J 4 HOH B 113 369 369 HOH HOH . J 4 HOH B 114 370 370 HOH HOH . J 4 HOH B 115 371 371 HOH HOH . J 4 HOH B 116 372 372 HOH HOH . J 4 HOH B 117 373 373 HOH HOH . J 4 HOH B 118 374 374 HOH HOH . J 4 HOH B 119 375 375 HOH HOH . J 4 HOH B 120 376 376 HOH HOH . J 4 HOH B 121 377 377 HOH HOH . J 4 HOH B 122 378 378 HOH HOH . J 4 HOH B 123 379 379 HOH HOH . J 4 HOH B 124 380 380 HOH HOH . J 4 HOH B 125 381 381 HOH HOH . J 4 HOH B 126 382 382 HOH HOH . J 4 HOH B 127 383 383 HOH HOH . J 4 HOH B 128 384 384 HOH HOH . J 4 HOH B 129 385 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -30.138 -18.675 28.333 1 64.1 ? C1 GOL 283 A 1 HETATM 2 O O1 GOL . . . E 3 -31.256 -19.069 27.57 1 50.55 ? O1 GOL 283 A 1 HETATM 3 C C2 GOL . . . E 3 -29.618 -19.799 29.228 1 71.92 ? C2 GOL 283 A 1 HETATM 4 O O2 GOL . . . E 3 -28.231 -19.702 29.472 1 67.04 ? O2 GOL 283 A 1 HETATM 5 C C3 GOL . . . E 3 -30.34 -19.763 30.559 1 73.9 ? C3 GOL 283 A 1 HETATM 6 O O3 GOL . . . E 3 -29.355 -19.747 31.54 1 70.06 ? O3 GOL 283 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #