data_3RKK
#
_model_server_result.job_id            '_MMhGF1kaRr4mHyN5VA2Mw' 
_model_server_result.datetime_utc      '2024-11-07 02:48:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":286}' 
#
_entry.id    3RKK 
#
_exptl.entry_id    3RKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.98 
_cell.angle_gamma         90 
_cell.entry_id            3RKK 
_cell.length_a            59.76 
_cell.length_b            50.862 
_cell.length_c            70.717 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 N N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     3RKK 
_atom_sites.fract_transf_matrix[1][1]    0.016734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00511 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 281 281 SO4 SO4 . 
D 2 SO4 A 1 282 282 SO4 SO4 . 
E 2 SO4 A 1 283 283 SO4 SO4 . 
F 3 GOL A 1 284 284 GOL GOL . 
G 3 GOL A 1 285 285 GOL GOL . 
H 3 GOL A 1 286 286 GOL GOL . 
I 3 GOL A 1 271 271 GOL GOL . 
J 2 SO4 B 1 281 281 SO4 SO4 . 
K 2 SO4 B 1 282 282 SO4 SO4 . 
L 2 SO4 B 1 283 283 SO4 SO4 . 
M 3 GOL B 1 285 285 GOL GOL . 
N 3 GOL B 1 286 286 GOL GOL . 
O 4 ACY B 1 287 287 ACY ACY . 
P 5 HOH A 1 1 1 HOH HOH . 
P 5 HOH A 2 2 2 HOH HOH . 
P 5 HOH A 3 3 3 HOH HOH . 
P 5 HOH A 4 4 4 HOH HOH . 
P 5 HOH A 5 5 5 HOH HOH . 
P 5 HOH A 6 6 6 HOH HOH . 
P 5 HOH A 7 7 7 HOH HOH . 
P 5 HOH A 8 8 8 HOH HOH . 
P 5 HOH A 9 9 9 HOH HOH . 
P 5 HOH A 10 10 10 HOH HOH . 
P 5 HOH A 11 11 11 HOH HOH . 
P 5 HOH A 12 12 12 HOH HOH . 
P 5 HOH A 13 13 13 HOH HOH . 
P 5 HOH A 14 14 14 HOH HOH . 
P 5 HOH A 15 15 15 HOH HOH . 
P 5 HOH A 16 16 16 HOH HOH . 
P 5 HOH A 17 17 17 HOH HOH . 
P 5 HOH A 18 18 18 HOH HOH . 
P 5 HOH A 19 19 19 HOH HOH . 
P 5 HOH A 20 20 20 HOH HOH . 
P 5 HOH A 21 21 21 HOH HOH . 
P 5 HOH A 22 22 22 HOH HOH . 
P 5 HOH A 23 23 23 HOH HOH . 
P 5 HOH A 24 24 24 HOH HOH . 
P 5 HOH A 25 25 25 HOH HOH . 
P 5 HOH A 26 26 26 HOH HOH . 
P 5 HOH A 27 27 27 HOH HOH . 
P 5 HOH A 28 272 272 HOH HOH . 
P 5 HOH A 29 273 273 HOH HOH . 
P 5 HOH A 30 274 274 HOH HOH . 
P 5 HOH A 31 275 275 HOH HOH . 
P 5 HOH A 32 276 276 HOH HOH . 
P 5 HOH A 33 277 277 HOH HOH . 
P 5 HOH A 34 278 278 HOH HOH . 
P 5 HOH A 35 279 279 HOH HOH . 
P 5 HOH A 36 280 280 HOH HOH . 
P 5 HOH A 37 287 287 HOH HOH . 
P 5 HOH A 38 288 288 HOH HOH . 
P 5 HOH A 39 289 289 HOH HOH . 
P 5 HOH A 40 290 290 HOH HOH . 
P 5 HOH A 41 291 291 HOH HOH . 
P 5 HOH A 42 292 292 HOH HOH . 
P 5 HOH A 43 293 293 HOH HOH . 
P 5 HOH A 44 294 294 HOH HOH . 
P 5 HOH A 45 295 295 HOH HOH . 
P 5 HOH A 46 296 296 HOH HOH . 
P 5 HOH A 47 297 297 HOH HOH . 
P 5 HOH A 48 298 298 HOH HOH . 
P 5 HOH A 49 299 299 HOH HOH . 
P 5 HOH A 50 300 300 HOH HOH . 
P 5 HOH A 51 301 301 HOH HOH . 
P 5 HOH A 52 302 302 HOH HOH . 
P 5 HOH A 53 303 303 HOH HOH . 
P 5 HOH A 54 304 304 HOH HOH . 
P 5 HOH A 55 305 305 HOH HOH . 
P 5 HOH A 56 306 306 HOH HOH . 
P 5 HOH A 57 307 307 HOH HOH . 
P 5 HOH A 58 308 308 HOH HOH . 
P 5 HOH A 59 309 309 HOH HOH . 
P 5 HOH A 60 310 310 HOH HOH . 
P 5 HOH A 61 311 311 HOH HOH . 
P 5 HOH A 62 312 312 HOH HOH . 
P 5 HOH A 63 313 313 HOH HOH . 
P 5 HOH A 64 314 314 HOH HOH . 
P 5 HOH A 65 315 315 HOH HOH . 
P 5 HOH A 66 316 316 HOH HOH . 
P 5 HOH A 67 317 317 HOH HOH . 
P 5 HOH A 68 318 318 HOH HOH . 
P 5 HOH A 69 319 319 HOH HOH . 
P 5 HOH A 70 320 320 HOH HOH . 
P 5 HOH A 71 321 321 HOH HOH . 
P 5 HOH A 72 322 322 HOH HOH . 
P 5 HOH A 73 323 323 HOH HOH . 
P 5 HOH A 74 324 324 HOH HOH . 
P 5 HOH A 75 325 325 HOH HOH . 
P 5 HOH A 76 326 326 HOH HOH . 
P 5 HOH A 77 327 327 HOH HOH . 
P 5 HOH A 78 328 328 HOH HOH . 
P 5 HOH A 79 329 329 HOH HOH . 
P 5 HOH A 80 330 330 HOH HOH . 
P 5 HOH A 81 331 331 HOH HOH . 
P 5 HOH A 82 332 332 HOH HOH . 
P 5 HOH A 83 333 333 HOH HOH . 
P 5 HOH A 84 334 334 HOH HOH . 
P 5 HOH A 85 335 335 HOH HOH . 
P 5 HOH A 86 336 336 HOH HOH . 
Q 5 HOH B 1 28 28 HOH HOH . 
Q 5 HOH B 2 29 29 HOH HOH . 
Q 5 HOH B 3 30 30 HOH HOH . 
Q 5 HOH B 4 31 31 HOH HOH . 
Q 5 HOH B 5 32 32 HOH HOH . 
Q 5 HOH B 6 33 33 HOH HOH . 
Q 5 HOH B 7 271 271 HOH HOH . 
Q 5 HOH B 8 272 272 HOH HOH . 
Q 5 HOH B 9 273 273 HOH HOH . 
Q 5 HOH B 10 274 274 HOH HOH . 
Q 5 HOH B 11 275 275 HOH HOH . 
Q 5 HOH B 12 276 276 HOH HOH . 
Q 5 HOH B 13 277 277 HOH HOH . 
Q 5 HOH B 14 278 278 HOH HOH . 
Q 5 HOH B 15 279 279 HOH HOH . 
Q 5 HOH B 16 280 280 HOH HOH . 
Q 5 HOH B 17 284 284 HOH HOH . 
Q 5 HOH B 18 288 288 HOH HOH . 
Q 5 HOH B 19 289 289 HOH HOH . 
Q 5 HOH B 20 290 290 HOH HOH . 
Q 5 HOH B 21 291 291 HOH HOH . 
Q 5 HOH B 22 292 292 HOH HOH . 
Q 5 HOH B 23 293 293 HOH HOH . 
Q 5 HOH B 24 294 294 HOH HOH . 
Q 5 HOH B 25 295 295 HOH HOH . 
Q 5 HOH B 26 296 296 HOH HOH . 
Q 5 HOH B 27 297 297 HOH HOH . 
Q 5 HOH B 28 298 298 HOH HOH . 
Q 5 HOH B 29 299 299 HOH HOH . 
Q 5 HOH B 30 300 300 HOH HOH . 
Q 5 HOH B 31 301 301 HOH HOH . 
Q 5 HOH B 32 302 302 HOH HOH . 
Q 5 HOH B 33 303 303 HOH HOH . 
Q 5 HOH B 34 304 304 HOH HOH . 
Q 5 HOH B 35 305 305 HOH HOH . 
Q 5 HOH B 36 306 306 HOH HOH . 
Q 5 HOH B 37 307 307 HOH HOH . 
Q 5 HOH B 38 308 308 HOH HOH . 
Q 5 HOH B 39 309 309 HOH HOH . 
Q 5 HOH B 40 310 310 HOH HOH . 
Q 5 HOH B 41 311 311 HOH HOH . 
Q 5 HOH B 42 312 312 HOH HOH . 
Q 5 HOH B 43 313 313 HOH HOH . 
Q 5 HOH B 44 314 314 HOH HOH . 
Q 5 HOH B 45 315 315 HOH HOH . 
Q 5 HOH B 46 316 316 HOH HOH . 
Q 5 HOH B 47 317 317 HOH HOH . 
Q 5 HOH B 48 318 318 HOH HOH . 
Q 5 HOH B 49 319 319 HOH HOH . 
Q 5 HOH B 50 320 320 HOH HOH . 
Q 5 HOH B 51 321 321 HOH HOH . 
Q 5 HOH B 52 322 322 HOH HOH . 
Q 5 HOH B 53 323 323 HOH HOH . 
Q 5 HOH B 54 324 324 HOH HOH . 
Q 5 HOH B 55 325 325 HOH HOH . 
Q 5 HOH B 56 326 326 HOH HOH . 
Q 5 HOH B 57 327 327 HOH HOH . 
Q 5 HOH B 58 328 328 HOH HOH . 
Q 5 HOH B 59 329 329 HOH HOH . 
Q 5 HOH B 60 330 330 HOH HOH . 
Q 5 HOH B 61 331 331 HOH HOH . 
Q 5 HOH B 62 332 332 HOH HOH . 
Q 5 HOH B 63 333 333 HOH HOH . 
Q 5 HOH B 64 334 334 HOH HOH . 
Q 5 HOH B 65 335 335 HOH HOH . 
Q 5 HOH B 66 336 336 HOH HOH . 
Q 5 HOH B 67 337 337 HOH HOH . 
Q 5 HOH B 68 338 338 HOH HOH . 
Q 5 HOH B 69 339 339 HOH HOH . 
Q 5 HOH B 70 340 340 HOH HOH . 
Q 5 HOH B 71 341 341 HOH HOH . 
Q 5 HOH B 72 342 342 HOH HOH . 
Q 5 HOH B 73 343 343 HOH HOH . 
Q 5 HOH B 74 344 344 HOH HOH . 
Q 5 HOH B 75 345 345 HOH HOH . 
Q 5 HOH B 76 346 346 HOH HOH . 
Q 5 HOH B 77 347 347 HOH HOH . 
Q 5 HOH B 78 348 348 HOH HOH . 
Q 5 HOH B 79 349 349 HOH HOH . 
Q 5 HOH B 80 350 350 HOH HOH . 
Q 5 HOH B 81 351 351 HOH HOH . 
Q 5 HOH B 82 352 352 HOH HOH . 
Q 5 HOH B 83 353 353 HOH HOH . 
Q 5 HOH B 84 354 354 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -11.748 5.404 39.523 1 34.57 ? C1 GOL 286 A 1 
HETATM 2 O O1 GOL . . . H 3 -11.227 6.74 39.541 1 28.18 ? O1 GOL 286 A 1 
HETATM 3 C C2 GOL . . . H 3 -12.265 4.954 38.143 1 34.95 ? C2 GOL 286 A 1 
HETATM 4 O O2 GOL . . . H 3 -12.697 5.994 37.262 1 30.98 ? O2 GOL 286 A 1 
HETATM 5 C C3 GOL . . . H 3 -13.434 4.015 38.31 1 33.06 ? C3 GOL 286 A 1 
HETATM 6 O O3 GOL . . . H 3 -13.971 3.909 37.003 1 40.39 ? O3 GOL 286 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#