data_3RKL # _model_server_result.job_id 3KxfB0hZ61d7TRukjE6rVA _model_server_result.datetime_utc '2024-11-05 01:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":88}' # _entry.id 3RKL # _exptl.entry_id 3RKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.48 _cell.angle_gamma 90 _cell.entry_id 3RKL _cell.length_a 80.93 _cell.length_b 88.962 _cell.length_c 55.346 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 -10.664177 0 138.488715 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 73 A SER 73 1_555 A N MSE 74 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 74 A MSE 74 1_555 A N PHE 75 A PHE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C SER 73 B SER 73 1_555 B N MSE 74 B MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MSE 74 B MSE 74 1_555 B N PHE 75 B PHE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 C C SER 73 C SER 73 1_555 C N MSE 74 C MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C MSE 74 C MSE 74 1_555 C N PHE 75 C PHE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C SER 73 D SER 73 1_555 D N MSE 74 D MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D C MSE 74 D MSE 74 1_555 D N PHE 75 D PHE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3RKL _atom_sites.fract_transf_matrix[1][1] 0.012356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008173 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACT A 1 88 1 ACT ACT . F 2 ACT D 1 88 1 ACT ACT . G 3 HOH A 1 89 9 HOH HOH . G 3 HOH A 2 90 27 HOH HOH . G 3 HOH A 3 91 31 HOH HOH . G 3 HOH A 4 92 38 HOH HOH . G 3 HOH A 5 93 60 HOH HOH . G 3 HOH A 6 94 66 HOH HOH . G 3 HOH A 7 95 95 HOH HOH . G 3 HOH A 8 107 107 HOH HOH . G 3 HOH A 9 127 127 HOH HOH . G 3 HOH A 10 128 128 HOH HOH . G 3 HOH A 11 131 131 HOH HOH . G 3 HOH A 12 132 132 HOH HOH . G 3 HOH A 13 135 135 HOH HOH . G 3 HOH A 14 142 142 HOH HOH . G 3 HOH A 15 143 143 HOH HOH . G 3 HOH A 16 144 144 HOH HOH . G 3 HOH A 17 145 145 HOH HOH . G 3 HOH A 18 146 146 HOH HOH . G 3 HOH A 19 147 147 HOH HOH . G 3 HOH A 20 149 149 HOH HOH . G 3 HOH A 21 167 167 HOH HOH . G 3 HOH A 22 177 177 HOH HOH . G 3 HOH A 23 178 178 HOH HOH . G 3 HOH A 24 181 181 HOH HOH . G 3 HOH A 25 182 182 HOH HOH . G 3 HOH A 26 183 183 HOH HOH . G 3 HOH A 27 184 184 HOH HOH . G 3 HOH A 28 187 187 HOH HOH . G 3 HOH A 29 188 188 HOH HOH . G 3 HOH A 30 189 189 HOH HOH . G 3 HOH A 31 194 194 HOH HOH . H 3 HOH B 1 88 1 HOH HOH . H 3 HOH B 2 89 2 HOH HOH . H 3 HOH B 3 90 90 HOH HOH . H 3 HOH B 4 91 91 HOH HOH . H 3 HOH B 5 92 3 HOH HOH . H 3 HOH B 6 93 6 HOH HOH . H 3 HOH B 7 94 11 HOH HOH . H 3 HOH B 8 95 12 HOH HOH . H 3 HOH B 9 96 14 HOH HOH . H 3 HOH B 10 97 22 HOH HOH . H 3 HOH B 11 98 23 HOH HOH . H 3 HOH B 12 99 24 HOH HOH . H 3 HOH B 13 100 28 HOH HOH . H 3 HOH B 14 101 101 HOH HOH . H 3 HOH B 15 102 43 HOH HOH . H 3 HOH B 16 103 44 HOH HOH . H 3 HOH B 17 104 46 HOH HOH . H 3 HOH B 18 105 105 HOH HOH . H 3 HOH B 19 106 47 HOH HOH . H 3 HOH B 20 107 48 HOH HOH . H 3 HOH B 21 108 108 HOH HOH . H 3 HOH B 22 109 50 HOH HOH . H 3 HOH B 23 110 110 HOH HOH . H 3 HOH B 24 111 111 HOH HOH . H 3 HOH B 25 112 52 HOH HOH . H 3 HOH B 26 113 113 HOH HOH . H 3 HOH B 27 114 114 HOH HOH . H 3 HOH B 28 115 59 HOH HOH . H 3 HOH B 29 116 116 HOH HOH . H 3 HOH B 30 117 65 HOH HOH . H 3 HOH B 31 118 67 HOH HOH . H 3 HOH B 32 119 119 HOH HOH . H 3 HOH B 33 120 68 HOH HOH . H 3 HOH B 34 121 69 HOH HOH . H 3 HOH B 35 122 81 HOH HOH . H 3 HOH B 36 123 87 HOH HOH . H 3 HOH B 37 126 126 HOH HOH . H 3 HOH B 38 136 136 HOH HOH . H 3 HOH B 39 141 141 HOH HOH . H 3 HOH B 40 150 150 HOH HOH . H 3 HOH B 41 152 152 HOH HOH . H 3 HOH B 42 164 164 HOH HOH . H 3 HOH B 43 168 168 HOH HOH . H 3 HOH B 44 170 170 HOH HOH . H 3 HOH B 45 171 171 HOH HOH . H 3 HOH B 46 172 172 HOH HOH . H 3 HOH B 47 174 174 HOH HOH . H 3 HOH B 48 176 176 HOH HOH . H 3 HOH B 49 186 186 HOH HOH . H 3 HOH B 50 191 191 HOH HOH . H 3 HOH B 51 195 195 HOH HOH . H 3 HOH B 52 197 197 HOH HOH . I 3 HOH C 1 88 88 HOH HOH . I 3 HOH C 2 89 4 HOH HOH . I 3 HOH C 3 90 8 HOH HOH . I 3 HOH C 4 91 16 HOH HOH . I 3 HOH C 5 92 17 HOH HOH . I 3 HOH C 6 93 21 HOH HOH . I 3 HOH C 7 94 26 HOH HOH . I 3 HOH C 8 95 30 HOH HOH . I 3 HOH C 9 96 34 HOH HOH . I 3 HOH C 10 97 35 HOH HOH . I 3 HOH C 11 98 37 HOH HOH . I 3 HOH C 12 99 45 HOH HOH . I 3 HOH C 13 100 100 HOH HOH . I 3 HOH C 14 101 49 HOH HOH . I 3 HOH C 15 102 55 HOH HOH . I 3 HOH C 16 103 103 HOH HOH . I 3 HOH C 17 104 58 HOH HOH . I 3 HOH C 18 105 61 HOH HOH . I 3 HOH C 19 106 63 HOH HOH . I 3 HOH C 20 107 70 HOH HOH . I 3 HOH C 21 108 71 HOH HOH . I 3 HOH C 22 109 72 HOH HOH . I 3 HOH C 23 110 76 HOH HOH . I 3 HOH C 24 111 78 HOH HOH . I 3 HOH C 25 112 84 HOH HOH . I 3 HOH C 26 113 85 HOH HOH . I 3 HOH C 27 118 118 HOH HOH . I 3 HOH C 28 129 129 HOH HOH . I 3 HOH C 29 130 130 HOH HOH . I 3 HOH C 30 133 133 HOH HOH . I 3 HOH C 31 134 134 HOH HOH . I 3 HOH C 32 137 137 HOH HOH . I 3 HOH C 33 138 138 HOH HOH . I 3 HOH C 34 139 139 HOH HOH . I 3 HOH C 35 148 148 HOH HOH . I 3 HOH C 36 154 154 HOH HOH . I 3 HOH C 37 160 160 HOH HOH . I 3 HOH C 38 161 161 HOH HOH . I 3 HOH C 39 162 162 HOH HOH . I 3 HOH C 40 163 163 HOH HOH . I 3 HOH C 41 165 165 HOH HOH . I 3 HOH C 42 166 166 HOH HOH . I 3 HOH C 43 169 169 HOH HOH . I 3 HOH C 44 185 185 HOH HOH . I 3 HOH C 45 192 192 HOH HOH . I 3 HOH C 46 196 196 HOH HOH . J 3 HOH D 1 89 10 HOH HOH . J 3 HOH D 2 90 13 HOH HOH . J 3 HOH D 3 91 15 HOH HOH . J 3 HOH D 4 92 25 HOH HOH . J 3 HOH D 5 93 33 HOH HOH . J 3 HOH D 6 94 36 HOH HOH . J 3 HOH D 7 95 40 HOH HOH . J 3 HOH D 8 96 41 HOH HOH . J 3 HOH D 9 97 53 HOH HOH . J 3 HOH D 10 98 56 HOH HOH . J 3 HOH D 11 99 57 HOH HOH . J 3 HOH D 12 100 80 HOH HOH . J 3 HOH D 13 106 106 HOH HOH . J 3 HOH D 14 109 109 HOH HOH . J 3 HOH D 15 115 115 HOH HOH . J 3 HOH D 16 121 121 HOH HOH . J 3 HOH D 17 122 122 HOH HOH . J 3 HOH D 18 125 125 HOH HOH . J 3 HOH D 19 140 140 HOH HOH . J 3 HOH D 20 156 156 HOH HOH . J 3 HOH D 21 157 157 HOH HOH . J 3 HOH D 22 158 158 HOH HOH . J 3 HOH D 23 159 159 HOH HOH . J 3 HOH D 24 173 173 HOH HOH . J 3 HOH D 25 175 175 HOH HOH . J 3 HOH D 26 179 179 HOH HOH . J 3 HOH D 27 180 180 HOH HOH . J 3 HOH D 28 190 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . F 2 -5.351 33.681 69.228 0.5 40.95 ? C ACT 88 D 1 HETATM 2 O O ACT . . . F 2 -6.413 34.33 69.317 0.5 44.92 ? O ACT 88 D 1 HETATM 3 O OXT ACT . . . F 2 -4.3 34.347 69.126 0.5 47.95 ? OXT ACT 88 D 1 HETATM 4 C CH3 ACT . . . F 2 -5.34 32.184 69.24 0.5 30.4 ? CH3 ACT 88 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #