data_3RKO
#
_model_server_result.job_id            LVMXNuaxW5q4FxUnupI6aA 
_model_server_result.datetime_utc      '2024-12-27 00:54:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":488}' 
#
_entry.id    3RKO 
#
_exptl.entry_id    3RKO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.51 
_cell.angle_beta          104.08 
_cell.angle_gamma         108.51 
_cell.entry_id            3RKO 
_cell.length_a            94.98 
_cell.length_b            116.57 
_cell.length_c            191.37 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,GA,HA,IA,JA 1 1 
G,H,I,J,K,L,W,X,Y,Z,AA,BA,CA,DA,EA,FA,KA,LA,MA,NA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 Q N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
? 7 U N N 
? 7 V N N 
? 7 W N N 
? 7 X N N 
? 7 Y N N 
? 7 AA N N 
? 7 BA N N 
? 7 CA N N 
? 7 DA N N 
? 7 EA N N 
? 7 FA N N 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 278 n n 
C1 H11 LFA sing 279 n n 
C1 H12 LFA sing 280 n n 
C1 H13 LFA sing 281 n n 
C2 C3 LFA sing 282 n n 
C2 H21 LFA sing 283 n n 
C2 H22 LFA sing 284 n n 
C3 C4 LFA sing 285 n n 
C3 H31 LFA sing 286 n n 
C3 H32 LFA sing 287 n n 
C4 C5 LFA sing 288 n n 
C4 H41 LFA sing 289 n n 
C4 H42 LFA sing 290 n n 
C5 C6 LFA sing 291 n n 
C5 H51 LFA sing 292 n n 
C5 H52 LFA sing 293 n n 
C6 C7 LFA sing 294 n n 
C6 H61 LFA sing 295 n n 
C6 H62 LFA sing 296 n n 
C7 C8 LFA sing 297 n n 
C7 H71 LFA sing 298 n n 
C7 H72 LFA sing 299 n n 
C8 C9 LFA sing 300 n n 
C8 H81 LFA sing 301 n n 
C8 H82 LFA sing 302 n n 
C9 C10 LFA sing 303 n n 
C9 H91 LFA sing 304 n n 
C9 H92 LFA sing 305 n n 
C10 C11 LFA sing 306 n n 
C10 H101 LFA sing 307 n n 
C10 H102 LFA sing 308 n n 
C11 C12 LFA sing 309 n n 
C11 H111 LFA sing 310 n n 
C11 H112 LFA sing 311 n n 
C12 C13 LFA sing 312 n n 
C12 H121 LFA sing 313 n n 
C12 H122 LFA sing 314 n n 
C13 C14 LFA sing 315 n n 
C13 H131 LFA sing 316 n n 
C13 H132 LFA sing 317 n n 
C14 C15 LFA sing 318 n n 
C14 H141 LFA sing 319 n n 
C14 H142 LFA sing 320 n n 
C15 C16 LFA sing 321 n n 
C15 H151 LFA sing 322 n n 
C15 H152 LFA sing 323 n n 
C16 C17 LFA sing 324 n n 
C16 H161 LFA sing 325 n n 
C16 H162 LFA sing 326 n n 
C17 C18 LFA sing 327 n n 
C17 H171 LFA sing 328 n n 
C17 H172 LFA sing 329 n n 
C18 C19 LFA sing 330 n n 
C18 H181 LFA sing 331 n n 
C18 H182 LFA sing 332 n n 
C19 C20 LFA sing 333 n n 
C19 H191 LFA sing 334 n n 
C19 H192 LFA sing 335 n n 
C20 H201 LFA sing 336 n n 
C20 H202 LFA sing 337 n n 
C20 H203 LFA sing 338 n n 
#
_atom_sites.entry_id                     3RKO 
_atom_sites.fract_transf_matrix[1][1]    0.010529 
_atom_sites.fract_transf_matrix[1][2]    0.003525 
_atom_sites.fract_transf_matrix[1][3]    0.003614 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009047 
_atom_sites.fract_transf_matrix[2][3]    0.002285 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005556 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 7 LFA L 1 614 2 LFA LFA . 
N 7 LFA L 1 615 7 LFA LFA . 
O 7 LFA L 1 616 9 LFA LFA . 
P 8 CA7 M 1 510 1 CA7 CA7 . 
Q 7 LFA M 1 511 3 LFA LFA . 
R 7 LFA M 1 512 8 LFA LFA . 
S 7 LFA N 1 486 4 LFA LFA . 
T 7 LFA N 1 487 5 LFA LFA . 
U 7 LFA N 1 488 6 LFA LFA . 
V 7 LFA N 1 489 14 LFA LFA . 
W 7 LFA B 1 614 2 LFA LFA . 
X 7 LFA B 1 615 7 LFA LFA . 
Y 7 LFA B 1 616 9 LFA LFA . 
Z 8 CA7 C 1 510 1 CA7 CA7 . 
AA 7 LFA C 1 511 3 LFA LFA . 
BA 7 LFA C 1 512 4 LFA LFA . 
CA 7 LFA C 1 513 8 LFA LFA . 
DA 7 LFA D 1 486 5 LFA LFA . 
EA 7 LFA D 1 487 6 LFA LFA . 
FA 7 LFA D 1 488 14 LFA LFA . 
GA 9 HOH L 1 617 2 HOH HOH . 
GA 9 HOH L 2 618 3 HOH HOH . 
HA 9 HOH M 1 513 5 HOH HOH . 
HA 9 HOH M 2 514 6 HOH HOH . 
IA 9 HOH N 1 490 7 HOH HOH . 
IA 9 HOH N 2 491 8 HOH HOH . 
IA 9 HOH N 3 492 9 HOH HOH . 
JA 9 HOH K 1 101 10 HOH HOH . 
KA 9 HOH B 1 617 2 HOH HOH . 
KA 9 HOH B 2 618 3 HOH HOH . 
LA 9 HOH C 1 514 5 HOH HOH . 
LA 9 HOH C 2 515 6 HOH HOH . 
MA 9 HOH D 1 489 7 HOH HOH . 
MA 9 HOH D 2 490 8 HOH HOH . 
MA 9 HOH D 3 491 9 HOH HOH . 
NA 9 HOH G 1 101 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . U 7 -12.04 11.73 -17.934 1 38.39 ? C1 LFA 488 N 1 
HETATM 2 C C2 LFA . . . U 7 -11.709 10.652 -18.982 1 22.07 ? C2 LFA 488 N 1 
HETATM 3 C C3 LFA . . . U 7 -11.107 9.427 -18.283 1 50.59 ? C3 LFA 488 N 1 
HETATM 4 C C4 LFA . . . U 7 -10.748 8.293 -19.25 1 64.61 ? C4 LFA 488 N 1 
HETATM 5 C C5 LFA . . . U 7 -10.144 7.086 -18.502 1 29.87 ? C5 LFA 488 N 1 
HETATM 6 C C6 LFA . . . U 7 -9.797 5.977 -19.509 1 94.83 ? C6 LFA 488 N 1 
HETATM 7 C C7 LFA . . . U 7 -9.185 4.709 -18.891 1 50.48 ? C7 LFA 488 N 1 
HETATM 8 C C8 LFA . . . U 7 -8.893 3.683 -19.999 1 25.3 ? C8 LFA 488 N 1 
HETATM 9 C C9 LFA . . . U 7 -8.282 2.39 -19.45 1 102.5 ? C9 LFA 488 N 1 
HETATM 10 C C10 LFA . . . U 7 -8.019 1.371 -20.564 1 44.24 ? C10 LFA 488 N 1 
HETATM 11 C C11 LFA . . . U 7 -7.41 0.081 -19.988 1 63.9 ? C11 LFA 488 N 1 
HETATM 12 C C12 LFA . . . U 7 -7.149 -0.954 -21.095 1 63.09 ? C12 LFA 488 N 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    135 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           12 
#