data_3RKO # _model_server_result.job_id aYLI0JEB0jchBeSTbNuZJQ _model_server_result.datetime_utc '2024-11-01 06:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":510}' # _entry.id 3RKO # _exptl.entry_id 3RKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.626 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 98.51 _cell.angle_beta 104.08 _cell.angle_gamma 108.51 _cell.entry_id 3RKO _cell.length_a 94.98 _cell.length_b 116.57 _cell.length_c 191.37 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,GA,HA,IA,JA 1 1 G,H,I,J,K,L,W,X,Y,Z,AA,BA,CA,DA,EA,FA,KA,LA,MA,NA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 Z N N # _chem_comp.formula 'C25 H46 O11' _chem_comp.formula_weight 522.626 _chem_comp.id CA7 _chem_comp.mon_nstd_flag . _chem_comp.name '7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C1 CA7 sing 70 n n O1 C1 CA7 sing 71 n n C1 C2 CA7 sing 72 n n C1 H1 CA7 sing 73 n n CBJ O1 CA7 sing 74 n n C3 C2 CA7 sing 75 n n C2 O2 CA7 sing 76 n n C2 H2 CA7 sing 77 n n O2 HO2 CA7 sing 78 n n C4 C3 CA7 sing 79 n n C3 O3 CA7 sing 80 n n C3 H3 CA7 sing 81 n n O3 HO3 CA7 sing 82 n n C5 C4 CA7 sing 83 n n O4 C4 CA7 sing 84 n n C4 H4 CA7 sing 85 n n O4 HO4 CA7 sing 86 n n C6 C5 CA7 sing 87 n n C5 O5 CA7 sing 88 n n C5 H5 CA7 sing 89 n n C6 O6 CA7 sing 90 n n C6 H6 CA7 sing 91 n n C6 H6A CA7 sing 92 n n O6 HO6 CA7 sing 93 n n CAR OAB CA7 sing 94 n n OAB HOAB CA7 sing 95 n n OAF CBF CA7 sing 96 n n OAF HOAF CA7 sing 97 n n OAG CBG CA7 sing 98 n n OAG HOAG CA7 sing 99 n n CAJ CAH CA7 sing 100 n n CAH CAI CA7 sing 101 n n CAH HAH CA7 sing 102 n n CAH HAHA CA7 sing 103 n n CAL CAI CA7 sing 104 n n CAI HAI CA7 sing 105 n n CAI HAIA CA7 sing 106 n n CAM CAJ CA7 sing 107 n n CAJ HAJ CA7 sing 108 n n CAJ HAJA CA7 sing 109 n n CAO CAK CA7 sing 110 n n CAN CAK CA7 sing 111 n n CAK HAK CA7 sing 112 n n CAK HAKA CA7 sing 113 n n CAL CAP CA7 sing 114 n n CAL HAL CA7 sing 115 n n CAL HALA CA7 sing 116 n n CAM CAS CA7 sing 117 n n CAM HAM CA7 sing 118 n n CAM HAMA CA7 sing 119 n n CAN CAT CA7 sing 120 n n CAN HAN CA7 sing 121 n n CAN HANA CA7 sing 122 n n CAO CAU CA7 sing 123 n n CAO HAO CA7 sing 124 n n CAO HAOA CA7 sing 125 n n OAX CAP CA7 sing 126 n n CAP HAP CA7 sing 127 n n CAP HAPA CA7 sing 128 n n CBB CAR CA7 sing 129 n n CAR HAR CA7 sing 130 n n CAR HARA CA7 sing 131 n n CAZ CAS CA7 sing 132 n n CAS HAS CA7 sing 133 n n CAS HASA CA7 sing 134 n n CAZ CAT CA7 sing 135 n n CAT HAT CA7 sing 136 n n CAT HATA CA7 sing 137 n n CAZ CAU CA7 sing 138 n n CAU HAU CA7 sing 139 n n CAU HAUA CA7 sing 140 n n CBH OAV CA7 sing 141 n n OAV CBB CA7 sing 142 n n OAX CBH CA7 sing 143 n n CAZ HAZ CA7 sing 144 n n CBJ CBB CA7 sing 145 n n CBB HBB CA7 sing 146 n n CBF CBG CA7 sing 147 n n CBF CBH CA7 sing 148 n n CBF HBF CA7 sing 149 n n CBG CBJ CA7 sing 150 n n CBG HBG CA7 sing 151 n n CBH HBH CA7 sing 152 n n CBJ HBJ CA7 sing 153 n n # _atom_sites.entry_id 3RKO _atom_sites.fract_transf_matrix[1][1] 0.010529 _atom_sites.fract_transf_matrix[1][2] 0.003525 _atom_sites.fract_transf_matrix[1][3] 0.003614 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009047 _atom_sites.fract_transf_matrix[2][3] 0.002285 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 LFA L 1 614 2 LFA LFA . N 7 LFA L 1 615 7 LFA LFA . O 7 LFA L 1 616 9 LFA LFA . P 8 CA7 M 1 510 1 CA7 CA7 . Q 7 LFA M 1 511 3 LFA LFA . R 7 LFA M 1 512 8 LFA LFA . S 7 LFA N 1 486 4 LFA LFA . T 7 LFA N 1 487 5 LFA LFA . U 7 LFA N 1 488 6 LFA LFA . V 7 LFA N 1 489 14 LFA LFA . W 7 LFA B 1 614 2 LFA LFA . X 7 LFA B 1 615 7 LFA LFA . Y 7 LFA B 1 616 9 LFA LFA . Z 8 CA7 C 1 510 1 CA7 CA7 . AA 7 LFA C 1 511 3 LFA LFA . BA 7 LFA C 1 512 4 LFA LFA . CA 7 LFA C 1 513 8 LFA LFA . DA 7 LFA D 1 486 5 LFA LFA . EA 7 LFA D 1 487 6 LFA LFA . FA 7 LFA D 1 488 14 LFA LFA . GA 9 HOH L 1 617 2 HOH HOH . GA 9 HOH L 2 618 3 HOH HOH . HA 9 HOH M 1 513 5 HOH HOH . HA 9 HOH M 2 514 6 HOH HOH . IA 9 HOH N 1 490 7 HOH HOH . IA 9 HOH N 2 491 8 HOH HOH . IA 9 HOH N 3 492 9 HOH HOH . JA 9 HOH K 1 101 10 HOH HOH . KA 9 HOH B 1 617 2 HOH HOH . KA 9 HOH B 2 618 3 HOH HOH . LA 9 HOH C 1 514 5 HOH HOH . LA 9 HOH C 2 515 6 HOH HOH . MA 9 HOH D 1 489 7 HOH HOH . MA 9 HOH D 2 490 8 HOH HOH . MA 9 HOH D 3 491 9 HOH HOH . NA 9 HOH G 1 101 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CA7 . . . P 8 -14.465 45.277 41.787 1 114.95 ? C1 CA7 510 M 1 HETATM 2 O O1 CA7 . . . P 8 -13.337 46.145 41.97 1 118.4 ? O1 CA7 510 M 1 HETATM 3 C C2 CA7 . . . P 8 -15.508 46.057 41 1 165.58 ? C2 CA7 510 M 1 HETATM 4 O O2 CA7 . . . P 8 -14.971 46.456 39.73 1 215.91 ? O2 CA7 510 M 1 HETATM 5 C C3 CA7 . . . P 8 -15.996 47.286 41.686 1 142.47 ? C3 CA7 510 M 1 HETATM 6 O O3 CA7 . . . P 8 -16.962 47.897 40.872 1 133.35 ? O3 CA7 510 M 1 HETATM 7 C C4 CA7 . . . P 8 -16.535 46.938 43.047 1 101.46 ? C4 CA7 510 M 1 HETATM 8 O O4 CA7 . . . P 8 -16.975 48.049 43.759 1 64.52 ? O4 CA7 510 M 1 HETATM 9 C C5 CA7 . . . P 8 -15.487 46.184 43.827 1 101.43 ? C5 CA7 510 M 1 HETATM 10 O O5 CA7 . . . P 8 -14.991 45.028 43.105 1 112.86 ? O5 CA7 510 M 1 HETATM 11 C C6 CA7 . . . P 8 -15.988 45.904 45.19 1 26.92 ? C6 CA7 510 M 1 HETATM 12 O O6 CA7 . . . P 8 -17.087 45.003 45.116 1 69.48 ? O6 CA7 510 M 1 HETATM 13 O OAB CA7 . . . P 8 -9.835 45.082 39.646 1 97.31 ? OAB CA7 510 M 1 HETATM 14 O OAF CA7 . . . P 8 -11.311 43.263 45.351 1 101.62 ? OAF CA7 510 M 1 HETATM 15 O OAG CA7 . . . P 8 -12.748 45.483 44.824 1 173.1 ? OAG CA7 510 M 1 HETATM 16 C CAH CA7 . . . P 8 -4.732 41.494 44.47 1 39.26 ? CAH CA7 510 M 1 HETATM 17 C CAI CA7 . . . P 8 -5.542 42.559 43.708 1 26.46 ? CAI CA7 510 M 1 HETATM 18 C CAJ CA7 . . . P 8 -4.91 40.095 43.944 1 12.23 ? CAJ CA7 510 M 1 HETATM 19 C CAK CA7 . . . P 8 -0.034 35.772 45.478 1 13.28 ? CAK CA7 510 M 1 HETATM 20 C CAL CA7 . . . P 8 -7.014 42.155 43.783 1 19.22 ? CAL CA7 510 M 1 HETATM 21 C CAM CA7 . . . P 8 -4.1 39.052 44.744 1 62.97 ? CAM CA7 510 M 1 HETATM 22 C CAN CA7 . . . P 8 0.354 37.095 46.191 1 61.79 ? CAN CA7 510 M 1 HETATM 23 C CAO CA7 . . . P 8 -1.56 35.603 45.621 1 85.41 ? CAO CA7 510 M 1 HETATM 24 C CAP CA7 . . . P 8 -8.071 43.127 43.232 1 75.15 ? CAP CA7 510 M 1 HETATM 25 C CAR CA7 . . . P 8 -10.747 45.624 40.619 1 131.52 ? CAR CA7 510 M 1 HETATM 26 C CAS CA7 . . . P 8 -2.582 39.251 44.754 1 62.95 ? CAS CA7 510 M 1 HETATM 27 C CAT CA7 . . . P 8 -0.324 38.253 45.409 1 128.27 ? CAT CA7 510 M 1 HETATM 28 C CAU CA7 . . . P 8 -2.241 36.754 44.849 1 104.37 ? CAU CA7 510 M 1 HETATM 29 O OAV CA7 . . . P 8 -10.346 43.851 41.878 1 86.04 ? OAV CA7 510 M 1 HETATM 30 O OAX CA7 . . . P 8 -9.295 42.38 43.39 1 111.71 ? OAX CA7 510 M 1 HETATM 31 C CAZ CA7 . . . P 8 -1.872 38.107 45.503 1 81.72 ? CAZ CA7 510 M 1 HETATM 32 C CBB CA7 . . . P 8 -11.518 44.525 41.426 1 125.31 ? CBB CA7 510 M 1 HETATM 33 C CBF CA7 . . . P 8 -11.056 43.996 44.158 1 90.45 ? CBF CA7 510 M 1 HETATM 34 C CBG CA7 . . . P 8 -12.352 44.657 43.727 1 71.48 ? CBG CA7 510 M 1 HETATM 35 C CBH CA7 . . . P 8 -10.543 43.045 43.037 1 100.97 ? CBH CA7 510 M 1 HETATM 36 C CBJ CA7 . . . P 8 -12.127 45.473 42.427 1 137.54 ? CBJ CA7 510 M 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 537 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 36 #