data_3RKO
#
_model_server_result.job_id            QuoErUxnTNx11z7RmN9kwg 
_model_server_result.datetime_utc      '2024-11-01 06:41:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":510}' 
#
_entry.id    3RKO 
#
_exptl.entry_id    3RKO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.626 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.51 
_cell.angle_beta          104.08 
_cell.angle_gamma         108.51 
_cell.entry_id            3RKO 
_cell.length_a            94.98 
_cell.length_b            116.57 
_cell.length_c            191.37 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,GA,HA,IA,JA 1 1 
G,H,I,J,K,L,W,X,Y,Z,AA,BA,CA,DA,EA,FA,KA,LA,MA,NA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 P N N 
? 8 Z N N 
#
_chem_comp.formula           'C25 H46 O11' 
_chem_comp.formula_weight    522.626 
_chem_comp.id                CA7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C1 CA7 sing 70 n n 
O1 C1 CA7 sing 71 n n 
C1 C2 CA7 sing 72 n n 
C1 H1 CA7 sing 73 n n 
CBJ O1 CA7 sing 74 n n 
C3 C2 CA7 sing 75 n n 
C2 O2 CA7 sing 76 n n 
C2 H2 CA7 sing 77 n n 
O2 HO2 CA7 sing 78 n n 
C4 C3 CA7 sing 79 n n 
C3 O3 CA7 sing 80 n n 
C3 H3 CA7 sing 81 n n 
O3 HO3 CA7 sing 82 n n 
C5 C4 CA7 sing 83 n n 
O4 C4 CA7 sing 84 n n 
C4 H4 CA7 sing 85 n n 
O4 HO4 CA7 sing 86 n n 
C6 C5 CA7 sing 87 n n 
C5 O5 CA7 sing 88 n n 
C5 H5 CA7 sing 89 n n 
C6 O6 CA7 sing 90 n n 
C6 H6 CA7 sing 91 n n 
C6 H6A CA7 sing 92 n n 
O6 HO6 CA7 sing 93 n n 
CAR OAB CA7 sing 94 n n 
OAB HOAB CA7 sing 95 n n 
OAF CBF CA7 sing 96 n n 
OAF HOAF CA7 sing 97 n n 
OAG CBG CA7 sing 98 n n 
OAG HOAG CA7 sing 99 n n 
CAJ CAH CA7 sing 100 n n 
CAH CAI CA7 sing 101 n n 
CAH HAH CA7 sing 102 n n 
CAH HAHA CA7 sing 103 n n 
CAL CAI CA7 sing 104 n n 
CAI HAI CA7 sing 105 n n 
CAI HAIA CA7 sing 106 n n 
CAM CAJ CA7 sing 107 n n 
CAJ HAJ CA7 sing 108 n n 
CAJ HAJA CA7 sing 109 n n 
CAO CAK CA7 sing 110 n n 
CAN CAK CA7 sing 111 n n 
CAK HAK CA7 sing 112 n n 
CAK HAKA CA7 sing 113 n n 
CAL CAP CA7 sing 114 n n 
CAL HAL CA7 sing 115 n n 
CAL HALA CA7 sing 116 n n 
CAM CAS CA7 sing 117 n n 
CAM HAM CA7 sing 118 n n 
CAM HAMA CA7 sing 119 n n 
CAN CAT CA7 sing 120 n n 
CAN HAN CA7 sing 121 n n 
CAN HANA CA7 sing 122 n n 
CAO CAU CA7 sing 123 n n 
CAO HAO CA7 sing 124 n n 
CAO HAOA CA7 sing 125 n n 
OAX CAP CA7 sing 126 n n 
CAP HAP CA7 sing 127 n n 
CAP HAPA CA7 sing 128 n n 
CBB CAR CA7 sing 129 n n 
CAR HAR CA7 sing 130 n n 
CAR HARA CA7 sing 131 n n 
CAZ CAS CA7 sing 132 n n 
CAS HAS CA7 sing 133 n n 
CAS HASA CA7 sing 134 n n 
CAZ CAT CA7 sing 135 n n 
CAT HAT CA7 sing 136 n n 
CAT HATA CA7 sing 137 n n 
CAZ CAU CA7 sing 138 n n 
CAU HAU CA7 sing 139 n n 
CAU HAUA CA7 sing 140 n n 
CBH OAV CA7 sing 141 n n 
OAV CBB CA7 sing 142 n n 
OAX CBH CA7 sing 143 n n 
CAZ HAZ CA7 sing 144 n n 
CBJ CBB CA7 sing 145 n n 
CBB HBB CA7 sing 146 n n 
CBF CBG CA7 sing 147 n n 
CBF CBH CA7 sing 148 n n 
CBF HBF CA7 sing 149 n n 
CBG CBJ CA7 sing 150 n n 
CBG HBG CA7 sing 151 n n 
CBH HBH CA7 sing 152 n n 
CBJ HBJ CA7 sing 153 n n 
#
_atom_sites.entry_id                     3RKO 
_atom_sites.fract_transf_matrix[1][1]    0.010529 
_atom_sites.fract_transf_matrix[1][2]    0.003525 
_atom_sites.fract_transf_matrix[1][3]    0.003614 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009047 
_atom_sites.fract_transf_matrix[2][3]    0.002285 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005556 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 7 LFA L 1 614 2 LFA LFA . 
N 7 LFA L 1 615 7 LFA LFA . 
O 7 LFA L 1 616 9 LFA LFA . 
P 8 CA7 M 1 510 1 CA7 CA7 . 
Q 7 LFA M 1 511 3 LFA LFA . 
R 7 LFA M 1 512 8 LFA LFA . 
S 7 LFA N 1 486 4 LFA LFA . 
T 7 LFA N 1 487 5 LFA LFA . 
U 7 LFA N 1 488 6 LFA LFA . 
V 7 LFA N 1 489 14 LFA LFA . 
W 7 LFA B 1 614 2 LFA LFA . 
X 7 LFA B 1 615 7 LFA LFA . 
Y 7 LFA B 1 616 9 LFA LFA . 
Z 8 CA7 C 1 510 1 CA7 CA7 . 
AA 7 LFA C 1 511 3 LFA LFA . 
BA 7 LFA C 1 512 4 LFA LFA . 
CA 7 LFA C 1 513 8 LFA LFA . 
DA 7 LFA D 1 486 5 LFA LFA . 
EA 7 LFA D 1 487 6 LFA LFA . 
FA 7 LFA D 1 488 14 LFA LFA . 
GA 9 HOH L 1 617 2 HOH HOH . 
GA 9 HOH L 2 618 3 HOH HOH . 
HA 9 HOH M 1 513 5 HOH HOH . 
HA 9 HOH M 2 514 6 HOH HOH . 
IA 9 HOH N 1 490 7 HOH HOH . 
IA 9 HOH N 2 491 8 HOH HOH . 
IA 9 HOH N 3 492 9 HOH HOH . 
JA 9 HOH K 1 101 10 HOH HOH . 
KA 9 HOH B 1 617 2 HOH HOH . 
KA 9 HOH B 2 618 3 HOH HOH . 
LA 9 HOH C 1 514 5 HOH HOH . 
LA 9 HOH C 2 515 6 HOH HOH . 
MA 9 HOH D 1 489 7 HOH HOH . 
MA 9 HOH D 2 490 8 HOH HOH . 
MA 9 HOH D 3 491 9 HOH HOH . 
NA 9 HOH G 1 101 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CA7 . . . Z 8 3.28 -10.295 -39.959 1 101.54 ? C1 CA7 510 C 1 
HETATM 2 O O1 CA7 . . . Z 8 1.86 -10.303 -40.139 1 64.84 ? O1 CA7 510 C 1 
HETATM 3 C C2 CA7 . . . Z 8 3.613 -9.026 -39.15 1 148.75 ? C2 CA7 510 C 1 
HETATM 4 O O2 CA7 . . . Z 8 2.929 -9.073 -37.88 1 192.02 ? O2 CA7 510 C 1 
HETATM 5 C C3 CA7 . . . Z 8 3.206 -7.748 -39.878 1 124.96 ? C3 CA7 510 C 1 
HETATM 6 O O3 CA7 . . . Z 8 3.58 -6.628 -39.071 1 129.3 ? O3 CA7 510 C 1 
HETATM 7 C C4 CA7 . . . Z 8 3.939 -7.706 -41.183 1 87.75 ? C4 CA7 510 C 1 
HETATM 8 O O4 CA7 . . . Z 8 3.528 -6.558 -41.917 1 55.74 ? O4 CA7 510 C 1 
HETATM 9 C C5 CA7 . . . Z 8 3.499 -8.908 -41.989 1 91.45 ? C5 CA7 510 C 1 
HETATM 10 O O5 CA7 . . . Z 8 3.886 -10.124 -41.283 1 124.14 ? O5 CA7 510 C 1 
HETATM 11 C C6 CA7 . . . Z 8 4.088 -8.718 -43.36 1 27.47 ? C6 CA7 510 C 1 
HETATM 12 O O6 CA7 . . . Z 8 5.502 -8.693 -43.311 1 80.85 ? O6 CA7 510 C 1 
HETATM 13 O OAB CA7 . . . Z 8 -0.623 -13.427 -38.023 1 91.29 ? OAB CA7 510 C 1 
HETATM 14 O OAF CA7 . . . Z 8 1.929 -13.796 -43.642 1 82.95 ? OAF CA7 510 C 1 
HETATM 15 O OAG CA7 . . . Z 8 2.036 -11.172 -43.074 1 148.72 ? OAG CA7 510 C 1 
HETATM 16 C CAH CA7 . . . Z 8 -2.5 -19.277 -42.289 1 28.55 ? CAH CA7 510 C 1 
HETATM 17 C CAI CA7 . . . Z 8 -2.133 -18.102 -41.374 1 33.2 ? CAI CA7 510 C 1 
HETATM 18 C CAJ CA7 . . . Z 8 -1.256 -20.165 -42.448 1 29.62 ? CAJ CA7 510 C 1 
HETATM 19 C CAK CA7 . . . Z 8 -2.363 -26.605 -43.777 1 28.67 ? CAK CA7 510 C 1 
HETATM 20 C CAL CA7 . . . Z 8 -1.025 -17.276 -42.038 1 20.16 ? CAL CA7 510 C 1 
HETATM 21 C CAM CA7 . . . Z 8 -1.415 -21.412 -43.346 1 55.51 ? CAM CA7 510 C 1 
HETATM 22 C CAN CA7 . . . Z 8 -3.727 -25.888 -44.023 1 100.6 ? CAN CA7 510 C 1 
HETATM 23 C CAO CA7 . . . Z 8 -1.226 -25.709 -44.274 1 57.64 ? CAO CA7 510 C 1 
HETATM 24 C CAP CA7 . . . Z 8 -0.507 -16.13 -41.152 1 24.5 ? CAP CA7 510 C 1 
HETATM 25 C CAR CA7 . . . Z 8 -0.326 -12.264 -38.809 1 111.8 ? CAR CA7 510 C 1 
HETATM 26 C CAS CA7 . . . Z 8 -2.557 -22.353 -42.878 1 38.73 ? CAS CA7 510 C 1 
HETATM 27 C CAT CA7 . . . Z 8 -3.716 -24.595 -43.2 1 99.76 ? CAT CA7 510 C 1 
HETATM 28 C CAU CA7 . . . Z 8 -1.231 -24.397 -43.463 1 82.91 ? CAU CA7 510 C 1 
HETATM 29 O OAV CA7 . . . Z 8 0.276 -13.714 -40.507 1 78.41 ? OAV CA7 510 C 1 
HETATM 30 O OAX CA7 . . . Z 8 0.434 -15.434 -42.035 1 99.91 ? OAX CA7 510 C 1 
HETATM 31 C CAZ CA7 . . . Z 8 -2.533 -23.662 -43.686 1 83.1 ? CAZ CA7 510 C 1 
HETATM 32 C CBB CA7 . . . Z 8 0.824 -12.596 -39.767 1 63.26 ? CBB CA7 510 C 1 
HETATM 33 C CBF CA7 . . . Z 8 1.267 -13.294 -42.479 1 75.4 ? CBF CA7 510 C 1 
HETATM 34 C CBG CA7 . . . Z 8 2.02 -12.08 -41.984 1 79.69 ? CBG CA7 510 C 1 
HETATM 35 C CBH CA7 . . . Z 8 1.169 -14.363 -41.419 1 103.05 ? CBH CA7 510 C 1 
HETATM 36 C CBJ CA7 . . . Z 8 1.283 -11.496 -40.762 1 97.88 ? CBJ CA7 510 C 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           36 
#