data_3RL9
#
_model_server_result.job_id            XLkT1SLIPzVBn3AiO5CUgA 
_model_server_result.datetime_utc      '2024-11-19 08:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":249}' 
#
_entry.id    3RL9 
#
_exptl.entry_id    3RL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RL9 
_cell.length_a            130.019 
_cell.length_b            130.019 
_cell.length_c            39.62 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              247 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.46 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 132 n n 
C1 C2 GOL sing 133 n n 
C1 H11 GOL sing 134 n n 
C1 H12 GOL sing 135 n n 
O1 HO1 GOL sing 136 n n 
C2 O2 GOL sing 137 n n 
C2 C3 GOL sing 138 n n 
C2 H2 GOL sing 139 n n 
O2 HO2 GOL sing 140 n n 
C3 O3 GOL sing 141 n n 
C3 H31 GOL sing 142 n n 
C3 H32 GOL sing 143 n n 
O3 HO3 GOL sing 144 n n 
#
_atom_sites.entry_id                     3RL9 
_atom_sites.fract_transf_matrix[1][1]    0.007691 
_atom_sites.fract_transf_matrix[1][2]    0.00444 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 247 247 NAG NAG . 
C 3 GOL A 1 249 249 GOL GOL . 
D 4 ADE A 1 248 247 ADE AD . 
E 5 HOH A 1 250 1 HOH HOH . 
E 5 HOH A 2 251 2 HOH HOH . 
E 5 HOH A 3 252 3 HOH HOH . 
E 5 HOH A 4 253 4 HOH HOH . 
E 5 HOH A 5 254 5 HOH HOH . 
E 5 HOH A 6 255 6 HOH HOH . 
E 5 HOH A 7 256 7 HOH HOH . 
E 5 HOH A 8 257 8 HOH HOH . 
E 5 HOH A 9 258 9 HOH HOH . 
E 5 HOH A 10 259 10 HOH HOH . 
E 5 HOH A 11 260 11 HOH HOH . 
E 5 HOH A 12 261 12 HOH HOH . 
E 5 HOH A 13 262 13 HOH HOH . 
E 5 HOH A 14 263 14 HOH HOH . 
E 5 HOH A 15 264 15 HOH HOH . 
E 5 HOH A 16 265 16 HOH HOH . 
E 5 HOH A 17 266 17 HOH HOH . 
E 5 HOH A 18 267 18 HOH HOH . 
E 5 HOH A 19 268 19 HOH HOH . 
E 5 HOH A 20 269 20 HOH HOH . 
E 5 HOH A 21 270 21 HOH HOH . 
E 5 HOH A 22 271 22 HOH HOH . 
E 5 HOH A 23 272 23 HOH HOH . 
E 5 HOH A 24 273 24 HOH HOH . 
E 5 HOH A 25 274 25 HOH HOH . 
E 5 HOH A 26 275 26 HOH HOH . 
E 5 HOH A 27 276 27 HOH HOH . 
E 5 HOH A 28 277 28 HOH HOH . 
E 5 HOH A 29 278 29 HOH HOH . 
E 5 HOH A 30 279 30 HOH HOH . 
E 5 HOH A 31 280 31 HOH HOH . 
E 5 HOH A 32 281 32 HOH HOH . 
E 5 HOH A 33 282 34 HOH HOH . 
E 5 HOH A 34 283 35 HOH HOH . 
E 5 HOH A 35 284 36 HOH HOH . 
E 5 HOH A 36 285 37 HOH HOH . 
E 5 HOH A 37 286 38 HOH HOH . 
E 5 HOH A 38 287 39 HOH HOH . 
E 5 HOH A 39 288 40 HOH HOH . 
E 5 HOH A 40 289 41 HOH HOH . 
E 5 HOH A 41 290 42 HOH HOH . 
E 5 HOH A 42 291 43 HOH HOH . 
E 5 HOH A 43 292 46 HOH HOH . 
E 5 HOH A 44 293 47 HOH HOH . 
E 5 HOH A 45 294 48 HOH HOH . 
E 5 HOH A 46 295 49 HOH HOH . 
E 5 HOH A 47 296 50 HOH HOH . 
E 5 HOH A 48 297 51 HOH HOH . 
E 5 HOH A 49 298 52 HOH HOH . 
E 5 HOH A 50 299 53 HOH HOH . 
E 5 HOH A 51 300 54 HOH HOH . 
E 5 HOH A 52 301 55 HOH HOH . 
E 5 HOH A 53 302 56 HOH HOH . 
E 5 HOH A 54 303 57 HOH HOH . 
E 5 HOH A 55 304 58 HOH HOH . 
E 5 HOH A 56 305 59 HOH HOH . 
E 5 HOH A 57 306 60 HOH HOH . 
E 5 HOH A 58 307 61 HOH HOH . 
E 5 HOH A 59 308 62 HOH HOH . 
E 5 HOH A 60 309 63 HOH HOH . 
E 5 HOH A 61 310 64 HOH HOH . 
E 5 HOH A 62 311 65 HOH HOH . 
E 5 HOH A 63 312 66 HOH HOH . 
E 5 HOH A 64 313 67 HOH HOH . 
E 5 HOH A 65 314 68 HOH HOH . 
E 5 HOH A 66 315 69 HOH HOH . 
E 5 HOH A 67 316 70 HOH HOH . 
E 5 HOH A 68 317 71 HOH HOH . 
E 5 HOH A 69 318 72 HOH HOH . 
E 5 HOH A 70 319 73 HOH HOH . 
E 5 HOH A 71 320 74 HOH HOH . 
E 5 HOH A 72 321 75 HOH HOH . 
E 5 HOH A 73 322 76 HOH HOH . 
E 5 HOH A 74 323 77 HOH HOH . 
E 5 HOH A 75 324 78 HOH HOH . 
E 5 HOH A 76 325 79 HOH HOH . 
E 5 HOH A 77 326 80 HOH HOH . 
E 5 HOH A 78 327 81 HOH HOH . 
E 5 HOH A 79 328 82 HOH HOH . 
E 5 HOH A 80 329 83 HOH HOH . 
E 5 HOH A 81 330 84 HOH HOH . 
E 5 HOH A 82 331 85 HOH HOH . 
E 5 HOH A 83 332 87 HOH HOH . 
E 5 HOH A 84 333 88 HOH HOH . 
E 5 HOH A 85 334 89 HOH HOH . 
E 5 HOH A 86 335 90 HOH HOH . 
E 5 HOH A 87 336 91 HOH HOH . 
E 5 HOH A 88 337 92 HOH HOH . 
E 5 HOH A 89 338 93 HOH HOH . 
E 5 HOH A 90 339 94 HOH HOH . 
E 5 HOH A 91 340 96 HOH HOH . 
E 5 HOH A 92 341 97 HOH HOH . 
E 5 HOH A 93 342 98 HOH HOH . 
E 5 HOH A 94 343 99 HOH HOH . 
E 5 HOH A 95 344 100 HOH HOH . 
E 5 HOH A 96 345 101 HOH HOH . 
E 5 HOH A 97 346 102 HOH HOH . 
E 5 HOH A 98 347 103 HOH HOH . 
E 5 HOH A 99 348 104 HOH HOH . 
E 5 HOH A 100 349 105 HOH HOH . 
E 5 HOH A 101 350 106 HOH HOH . 
E 5 HOH A 102 351 107 HOH HOH . 
E 5 HOH A 103 352 108 HOH HOH . 
E 5 HOH A 104 353 109 HOH HOH . 
E 5 HOH A 105 354 110 HOH HOH . 
E 5 HOH A 106 355 111 HOH HOH . 
E 5 HOH A 107 356 112 HOH HOH . 
E 5 HOH A 108 357 113 HOH HOH . 
E 5 HOH A 109 358 114 HOH HOH . 
E 5 HOH A 110 359 115 HOH HOH . 
E 5 HOH A 111 360 116 HOH HOH . 
E 5 HOH A 112 361 117 HOH HOH . 
E 5 HOH A 113 362 118 HOH HOH . 
E 5 HOH A 114 363 119 HOH HOH . 
E 5 HOH A 115 364 120 HOH HOH . 
E 5 HOH A 116 365 121 HOH HOH . 
E 5 HOH A 117 366 122 HOH HOH . 
E 5 HOH A 118 367 123 HOH HOH . 
E 5 HOH A 119 368 124 HOH HOH . 
E 5 HOH A 120 369 125 HOH HOH . 
E 5 HOH A 121 370 127 HOH HOH . 
E 5 HOH A 122 371 128 HOH HOH . 
E 5 HOH A 123 372 129 HOH HOH . 
E 5 HOH A 124 373 130 HOH HOH . 
E 5 HOH A 125 374 131 HOH HOH . 
E 5 HOH A 126 375 132 HOH HOH . 
E 5 HOH A 127 376 133 HOH HOH . 
E 5 HOH A 128 377 134 HOH HOH . 
E 5 HOH A 129 378 135 HOH HOH . 
E 5 HOH A 130 379 136 HOH HOH . 
E 5 HOH A 131 380 137 HOH HOH . 
E 5 HOH A 132 381 138 HOH HOH . 
E 5 HOH A 133 382 139 HOH HOH . 
E 5 HOH A 134 383 140 HOH HOH . 
E 5 HOH A 135 384 141 HOH HOH . 
E 5 HOH A 136 385 145 HOH HOH . 
E 5 HOH A 137 386 146 HOH HOH . 
E 5 HOH A 138 387 147 HOH HOH . 
E 5 HOH A 139 388 1 HOH HOH . 
E 5 HOH A 140 389 2 HOH HOH . 
E 5 HOH A 141 390 3 HOH HOH . 
E 5 HOH A 142 391 4 HOH HOH . 
E 5 HOH A 143 392 5 HOH HOH . 
E 5 HOH A 144 393 6 HOH HOH . 
E 5 HOH A 145 394 7 HOH HOH . 
E 5 HOH A 146 395 8 HOH HOH . 
E 5 HOH A 147 396 9 HOH HOH . 
E 5 HOH A 148 397 10 HOH HOH . 
E 5 HOH A 149 398 11 HOH HOH . 
E 5 HOH A 150 399 12 HOH HOH . 
E 5 HOH A 151 400 13 HOH HOH . 
E 5 HOH A 152 401 14 HOH HOH . 
E 5 HOH A 153 402 15 HOH HOH . 
E 5 HOH A 154 403 16 HOH HOH . 
E 5 HOH A 155 404 17 HOH HOH . 
E 5 HOH A 156 405 18 HOH HOH . 
E 5 HOH A 157 406 19 HOH HOH . 
E 5 HOH A 158 407 20 HOH HOH . 
E 5 HOH A 159 408 22 HOH HOH . 
E 5 HOH A 160 409 23 HOH HOH . 
E 5 HOH A 161 410 24 HOH HOH . 
E 5 HOH A 162 411 25 HOH HOH . 
E 5 HOH A 163 412 26 HOH HOH . 
E 5 HOH A 164 413 27 HOH HOH . 
E 5 HOH A 165 414 28 HOH HOH . 
E 5 HOH A 166 415 29 HOH HOH . 
E 5 HOH A 167 416 30 HOH HOH . 
E 5 HOH A 168 417 31 HOH HOH . 
E 5 HOH A 169 418 32 HOH HOH . 
E 5 HOH A 170 419 33 HOH HOH . 
E 5 HOH A 171 420 34 HOH HOH . 
E 5 HOH A 172 421 1 HOH HOH . 
E 5 HOH A 173 422 2 HOH HOH . 
E 5 HOH A 174 423 1 HOH HOH . 
E 5 HOH A 175 424 2 HOH HOH . 
E 5 HOH A 176 425 3 HOH HOH . 
E 5 HOH A 177 426 4 HOH HOH . 
E 5 HOH A 178 427 5 HOH HOH . 
E 5 HOH A 179 428 7 HOH HOH . 
E 5 HOH A 180 429 8 HOH HOH . 
E 5 HOH A 181 430 9 HOH HOH . 
E 5 HOH A 182 431 10 HOH HOH . 
E 5 HOH A 183 432 12 HOH HOH . 
E 5 HOH A 184 433 13 HOH HOH . 
E 5 HOH A 185 434 14 HOH HOH . 
E 5 HOH A 186 435 15 HOH HOH . 
E 5 HOH A 187 436 16 HOH HOH . 
E 5 HOH A 188 437 17 HOH HOH . 
E 5 HOH A 189 438 18 HOH HOH . 
E 5 HOH A 190 439 19 HOH HOH . 
E 5 HOH A 191 440 20 HOH HOH . 
E 5 HOH A 192 441 21 HOH HOH . 
E 5 HOH A 193 442 22 HOH HOH . 
E 5 HOH A 194 443 24 HOH HOH . 
E 5 HOH A 195 444 25 HOH HOH . 
E 5 HOH A 196 445 26 HOH HOH . 
E 5 HOH A 197 446 27 HOH HOH . 
E 5 HOH A 198 447 28 HOH HOH . 
E 5 HOH A 199 448 30 HOH HOH . 
E 5 HOH A 200 449 31 HOH HOH . 
E 5 HOH A 201 450 32 HOH HOH . 
E 5 HOH A 202 451 33 HOH HOH . 
E 5 HOH A 203 452 34 HOH HOH . 
E 5 HOH A 204 453 36 HOH HOH . 
E 5 HOH A 205 454 37 HOH HOH . 
E 5 HOH A 206 455 38 HOH HOH . 
E 5 HOH A 207 456 39 HOH HOH . 
E 5 HOH A 208 457 40 HOH HOH . 
E 5 HOH A 209 458 41 HOH HOH . 
E 5 HOH A 210 459 42 HOH HOH . 
E 5 HOH A 211 460 43 HOH HOH . 
E 5 HOH A 212 461 44 HOH HOH . 
E 5 HOH A 213 462 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -18.06 3.796 -21.763 1 38.51 ? C1 GOL 249 A 1 
HETATM 2 O O1 GOL . . . C 3 -17.108 4.824 -21.938 1 39.14 ? O1 GOL 249 A 1 
HETATM 3 C C2 GOL . . . C 3 -18.672 3.406 -23.105 1 38.41 ? C2 GOL 249 A 1 
HETATM 4 O O2 GOL . . . C 3 -17.649 3.136 -24.041 1 37.98 ? O2 GOL 249 A 1 
HETATM 5 C C3 GOL . . . C 3 -19.574 4.531 -23.608 1 38.2 ? C3 GOL 249 A 1 
HETATM 6 O O3 GOL . . . C 3 -20.148 4.17 -24.843 1 38 ? O3 GOL 249 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#