data_3RLB
#
_model_server_result.job_id            by1QuZ6zdZ7VGWpypIqStA 
_model_server_result.datetime_utc      '2024-11-26 18:08:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rlb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":184}' 
#
_entry.id    3RLB 
#
_exptl.entry_id    3RLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.81 
_cell.angle_gamma         90 
_cell.entry_id            3RLB 
_cell.length_a            61.654 
_cell.length_b            84.654 
_cell.length_c            127.301 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,P 1 1 
B,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 55 n n 
C1 O1 BNG sing 56 n n 
C1 O5 BNG sing 57 n n 
C1 H1 BNG sing 58 n n 
C2 C3 BNG sing 59 n n 
C2 O2 BNG sing 60 n n 
C2 H2 BNG sing 61 n n 
C3 C4 BNG sing 62 n n 
C3 O3 BNG sing 63 n n 
C3 H3 BNG sing 64 n n 
C4 C5 BNG sing 65 n n 
C4 O4 BNG sing 66 n n 
C4 H4 BNG sing 67 n n 
C5 C6 BNG sing 68 n n 
C5 O5 BNG sing 69 n n 
C5 H5 BNG sing 70 n n 
C6 O6 BNG sing 71 n n 
C6 H61 BNG sing 72 n n 
C6 H62 BNG sing 73 n n 
C1' C2' BNG sing 74 n n 
C1' O1 BNG sing 75 n n 
C1' "H1'1" BNG sing 76 n n 
C1' "H1'2" BNG sing 77 n n 
C2' C3' BNG sing 78 n n 
C2' "H2'1" BNG sing 79 n n 
C2' "H2'2" BNG sing 80 n n 
C3' C4' BNG sing 81 n n 
C3' "H3'1" BNG sing 82 n n 
C3' "H3'2" BNG sing 83 n n 
C4' C5' BNG sing 84 n n 
C4' "H4'1" BNG sing 85 n n 
C4' "H4'2" BNG sing 86 n n 
C5' C6' BNG sing 87 n n 
C5' "H5'1" BNG sing 88 n n 
C5' "H5'2" BNG sing 89 n n 
C6' C7' BNG sing 90 n n 
C6' "H6'1" BNG sing 91 n n 
C6' "H6'2" BNG sing 92 n n 
C7' C8' BNG sing 93 n n 
C7' "H7'1" BNG sing 94 n n 
C7' "H7'2" BNG sing 95 n n 
C8' C9' BNG sing 96 n n 
C8' "H8'1" BNG sing 97 n n 
C8' "H8'2" BNG sing 98 n n 
C9' "H9'1" BNG sing 99 n n 
C9' "H9'2" BNG sing 100 n n 
C9' "H9'3" BNG sing 101 n n 
O2 HO2 BNG sing 102 n n 
O3 HO3 BNG sing 103 n n 
O4 HO4 BNG sing 104 n n 
O6 HO6 BNG sing 105 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3RLB 
_atom_sites.fract_transf_matrix[1][1]    0.01622 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00165 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BNG A 1 183 183 BNG BNG . 
D 2 BNG A 1 184 184 BNG BNG . 
E 2 BNG A 1 185 185 BNG BNG . 
F 2 BNG A 1 186 186 BNG BNG . 
G 2 BNG A 1 187 187 BNG BNG . 
H 2 BNG A 1 188 188 BNG BNG . 
I 2 BNG A 1 189 189 BNG BNG . 
J 3 VIB A 1 191 191 VIB VIB . 
K 2 BNG B 1 183 183 BNG BNG . 
L 2 BNG B 1 184 184 BNG BNG . 
M 2 BNG B 1 185 185 BNG BNG . 
N 2 BNG B 1 186 186 BNG BNG . 
O 3 VIB B 1 187 187 VIB VIB . 
P 4 HOH A 1 192 192 HOH HOH . 
P 4 HOH A 2 193 193 HOH HOH . 
P 4 HOH A 3 194 194 HOH HOH . 
P 4 HOH A 4 195 195 HOH HOH . 
P 4 HOH A 5 196 196 HOH HOH . 
P 4 HOH A 6 197 197 HOH HOH . 
P 4 HOH A 7 198 198 HOH HOH . 
P 4 HOH A 8 199 199 HOH HOH . 
P 4 HOH A 9 200 200 HOH HOH . 
P 4 HOH A 10 201 201 HOH HOH . 
P 4 HOH A 11 202 202 HOH HOH . 
P 4 HOH A 12 203 203 HOH HOH . 
P 4 HOH A 13 204 204 HOH HOH . 
P 4 HOH A 14 205 205 HOH HOH . 
P 4 HOH A 15 206 206 HOH HOH . 
P 4 HOH A 16 207 207 HOH HOH . 
P 4 HOH A 17 208 208 HOH HOH . 
P 4 HOH A 18 209 209 HOH HOH . 
P 4 HOH A 19 210 210 HOH HOH . 
P 4 HOH A 20 211 211 HOH HOH . 
P 4 HOH A 21 212 212 HOH HOH . 
P 4 HOH A 22 213 213 HOH HOH . 
P 4 HOH A 23 214 214 HOH HOH . 
P 4 HOH A 24 215 215 HOH HOH . 
P 4 HOH A 25 216 216 HOH HOH . 
P 4 HOH A 26 217 217 HOH HOH . 
P 4 HOH A 27 218 218 HOH HOH . 
P 4 HOH A 28 219 219 HOH HOH . 
P 4 HOH A 29 220 220 HOH HOH . 
P 4 HOH A 30 221 221 HOH HOH . 
P 4 HOH A 31 222 222 HOH HOH . 
P 4 HOH A 32 223 223 HOH HOH . 
P 4 HOH A 33 224 224 HOH HOH . 
P 4 HOH A 34 225 225 HOH HOH . 
P 4 HOH A 35 226 226 HOH HOH . 
P 4 HOH A 36 227 227 HOH HOH . 
P 4 HOH A 37 228 228 HOH HOH . 
Q 4 HOH B 1 188 188 HOH HOH . 
Q 4 HOH B 2 189 189 HOH HOH . 
Q 4 HOH B 3 190 190 HOH HOH . 
Q 4 HOH B 4 191 191 HOH HOH . 
Q 4 HOH B 5 192 192 HOH HOH . 
Q 4 HOH B 6 193 193 HOH HOH . 
Q 4 HOH B 7 194 194 HOH HOH . 
Q 4 HOH B 8 195 195 HOH HOH . 
Q 4 HOH B 9 196 196 HOH HOH . 
Q 4 HOH B 10 197 197 HOH HOH . 
Q 4 HOH B 11 198 198 HOH HOH . 
Q 4 HOH B 12 199 199 HOH HOH . 
Q 4 HOH B 13 200 200 HOH HOH . 
Q 4 HOH B 14 201 201 HOH HOH . 
Q 4 HOH B 15 202 202 HOH HOH . 
Q 4 HOH B 16 203 203 HOH HOH . 
Q 4 HOH B 17 204 204 HOH HOH . 
Q 4 HOH B 18 205 205 HOH HOH . 
Q 4 HOH B 19 206 206 HOH HOH . 
Q 4 HOH B 20 207 207 HOH HOH . 
Q 4 HOH B 21 208 208 HOH HOH . 
Q 4 HOH B 22 209 209 HOH HOH . 
Q 4 HOH B 23 211 211 HOH HOH . 
Q 4 HOH B 24 212 212 HOH HOH . 
Q 4 HOH B 25 213 213 HOH HOH . 
Q 4 HOH B 26 214 214 HOH HOH . 
Q 4 HOH B 27 215 215 HOH HOH . 
Q 4 HOH B 28 216 216 HOH HOH . 
Q 4 HOH B 29 217 217 HOH HOH . 
Q 4 HOH B 30 218 218 HOH HOH . 
Q 4 HOH B 31 219 219 HOH HOH . 
Q 4 HOH B 32 220 220 HOH HOH . 
Q 4 HOH B 33 221 221 HOH HOH . 
Q 4 HOH B 34 222 222 HOH HOH . 
Q 4 HOH B 35 223 223 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' BNG . . . D 2 38.414 -23.082 30.797 0.7 40.84 ? C1' BNG 184 A 1 
HETATM 2 C C2' BNG . . . D 2 39.855 -23.235 31.241 0.7 43.67 ? C2' BNG 184 A 1 
HETATM 3 C C3' BNG . . . D 2 40.749 -23.298 30.018 0.7 43.94 ? C3' BNG 184 A 1 
HETATM 4 C C4' BNG . . . D 2 40.432 -24.568 29.233 0.7 44.22 ? C4' BNG 184 A 1 
HETATM 5 C C5' BNG . . . D 2 41.701 -25.36 29.012 0.7 43.83 ? C5' BNG 184 A 1 
HETATM 6 C C6' BNG . . . D 2 41.541 -26.856 29.235 0.7 45.55 ? C6' BNG 184 A 1 
HETATM 7 C C7' BNG . . . D 2 42.93 -27.478 29.353 0.7 46.87 ? C7' BNG 184 A 1 
HETATM 8 C C8' BNG . . . D 2 42.881 -28.921 29.854 0.7 48.75 ? C8' BNG 184 A 1 
HETATM 9 C C9' BNG . . . D 2 42.278 -29.858 28.841 0.7 49.45 ? C9' BNG 184 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#