data_3RLB # _model_server_result.job_id blwg-0VJHXTaXMPghp9Jfw _model_server_result.datetime_utc '2024-11-04 22:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":185}' # _entry.id 3RLB # _exptl.entry_id 3RLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.81 _cell.angle_gamma 90 _cell.entry_id 3RLB _cell.length_a 61.654 _cell.length_b 84.654 _cell.length_c 127.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,P 1 1 B,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 55 n n C1 O1 BNG sing 56 n n C1 O5 BNG sing 57 n n C1 H1 BNG sing 58 n n C2 C3 BNG sing 59 n n C2 O2 BNG sing 60 n n C2 H2 BNG sing 61 n n C3 C4 BNG sing 62 n n C3 O3 BNG sing 63 n n C3 H3 BNG sing 64 n n C4 C5 BNG sing 65 n n C4 O4 BNG sing 66 n n C4 H4 BNG sing 67 n n C5 C6 BNG sing 68 n n C5 O5 BNG sing 69 n n C5 H5 BNG sing 70 n n C6 O6 BNG sing 71 n n C6 H61 BNG sing 72 n n C6 H62 BNG sing 73 n n C1' C2' BNG sing 74 n n C1' O1 BNG sing 75 n n C1' "H1'1" BNG sing 76 n n C1' "H1'2" BNG sing 77 n n C2' C3' BNG sing 78 n n C2' "H2'1" BNG sing 79 n n C2' "H2'2" BNG sing 80 n n C3' C4' BNG sing 81 n n C3' "H3'1" BNG sing 82 n n C3' "H3'2" BNG sing 83 n n C4' C5' BNG sing 84 n n C4' "H4'1" BNG sing 85 n n C4' "H4'2" BNG sing 86 n n C5' C6' BNG sing 87 n n C5' "H5'1" BNG sing 88 n n C5' "H5'2" BNG sing 89 n n C6' C7' BNG sing 90 n n C6' "H6'1" BNG sing 91 n n C6' "H6'2" BNG sing 92 n n C7' C8' BNG sing 93 n n C7' "H7'1" BNG sing 94 n n C7' "H7'2" BNG sing 95 n n C8' C9' BNG sing 96 n n C8' "H8'1" BNG sing 97 n n C8' "H8'2" BNG sing 98 n n C9' "H9'1" BNG sing 99 n n C9' "H9'2" BNG sing 100 n n C9' "H9'3" BNG sing 101 n n O2 HO2 BNG sing 102 n n O3 HO3 BNG sing 103 n n O4 HO4 BNG sing 104 n n O6 HO6 BNG sing 105 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3RLB _atom_sites.fract_transf_matrix[1][1] 0.01622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNG A 1 183 183 BNG BNG . D 2 BNG A 1 184 184 BNG BNG . E 2 BNG A 1 185 185 BNG BNG . F 2 BNG A 1 186 186 BNG BNG . G 2 BNG A 1 187 187 BNG BNG . H 2 BNG A 1 188 188 BNG BNG . I 2 BNG A 1 189 189 BNG BNG . J 3 VIB A 1 191 191 VIB VIB . K 2 BNG B 1 183 183 BNG BNG . L 2 BNG B 1 184 184 BNG BNG . M 2 BNG B 1 185 185 BNG BNG . N 2 BNG B 1 186 186 BNG BNG . O 3 VIB B 1 187 187 VIB VIB . P 4 HOH A 1 192 192 HOH HOH . P 4 HOH A 2 193 193 HOH HOH . P 4 HOH A 3 194 194 HOH HOH . P 4 HOH A 4 195 195 HOH HOH . P 4 HOH A 5 196 196 HOH HOH . P 4 HOH A 6 197 197 HOH HOH . P 4 HOH A 7 198 198 HOH HOH . P 4 HOH A 8 199 199 HOH HOH . P 4 HOH A 9 200 200 HOH HOH . P 4 HOH A 10 201 201 HOH HOH . P 4 HOH A 11 202 202 HOH HOH . P 4 HOH A 12 203 203 HOH HOH . P 4 HOH A 13 204 204 HOH HOH . P 4 HOH A 14 205 205 HOH HOH . P 4 HOH A 15 206 206 HOH HOH . P 4 HOH A 16 207 207 HOH HOH . P 4 HOH A 17 208 208 HOH HOH . P 4 HOH A 18 209 209 HOH HOH . P 4 HOH A 19 210 210 HOH HOH . P 4 HOH A 20 211 211 HOH HOH . P 4 HOH A 21 212 212 HOH HOH . P 4 HOH A 22 213 213 HOH HOH . P 4 HOH A 23 214 214 HOH HOH . P 4 HOH A 24 215 215 HOH HOH . P 4 HOH A 25 216 216 HOH HOH . P 4 HOH A 26 217 217 HOH HOH . P 4 HOH A 27 218 218 HOH HOH . P 4 HOH A 28 219 219 HOH HOH . P 4 HOH A 29 220 220 HOH HOH . P 4 HOH A 30 221 221 HOH HOH . P 4 HOH A 31 222 222 HOH HOH . P 4 HOH A 32 223 223 HOH HOH . P 4 HOH A 33 224 224 HOH HOH . P 4 HOH A 34 225 225 HOH HOH . P 4 HOH A 35 226 226 HOH HOH . P 4 HOH A 36 227 227 HOH HOH . P 4 HOH A 37 228 228 HOH HOH . Q 4 HOH B 1 188 188 HOH HOH . Q 4 HOH B 2 189 189 HOH HOH . Q 4 HOH B 3 190 190 HOH HOH . Q 4 HOH B 4 191 191 HOH HOH . Q 4 HOH B 5 192 192 HOH HOH . Q 4 HOH B 6 193 193 HOH HOH . Q 4 HOH B 7 194 194 HOH HOH . Q 4 HOH B 8 195 195 HOH HOH . Q 4 HOH B 9 196 196 HOH HOH . Q 4 HOH B 10 197 197 HOH HOH . Q 4 HOH B 11 198 198 HOH HOH . Q 4 HOH B 12 199 199 HOH HOH . Q 4 HOH B 13 200 200 HOH HOH . Q 4 HOH B 14 201 201 HOH HOH . Q 4 HOH B 15 202 202 HOH HOH . Q 4 HOH B 16 203 203 HOH HOH . Q 4 HOH B 17 204 204 HOH HOH . Q 4 HOH B 18 205 205 HOH HOH . Q 4 HOH B 19 206 206 HOH HOH . Q 4 HOH B 20 207 207 HOH HOH . Q 4 HOH B 21 208 208 HOH HOH . Q 4 HOH B 22 209 209 HOH HOH . Q 4 HOH B 23 211 211 HOH HOH . Q 4 HOH B 24 212 212 HOH HOH . Q 4 HOH B 25 213 213 HOH HOH . Q 4 HOH B 26 214 214 HOH HOH . Q 4 HOH B 27 215 215 HOH HOH . Q 4 HOH B 28 216 216 HOH HOH . Q 4 HOH B 29 217 217 HOH HOH . Q 4 HOH B 30 218 218 HOH HOH . Q 4 HOH B 31 219 219 HOH HOH . Q 4 HOH B 32 220 220 HOH HOH . Q 4 HOH B 33 221 221 HOH HOH . Q 4 HOH B 34 222 222 HOH HOH . Q 4 HOH B 35 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2' BNG . . . M 2 44.676 -3.284 34.253 0.5 36.61 ? C2' BNG 185 B 1 HETATM 2 C C3' BNG . . . M 2 43.859 -4.575 34.292 0.5 39.34 ? C3' BNG 185 B 1 HETATM 3 C C4' BNG . . . M 2 42.477 -4.448 33.644 0.5 38.13 ? C4' BNG 185 B 1 HETATM 4 C C5' BNG . . . M 2 41.625 -5.697 33.882 0.5 37.74 ? C5' BNG 185 B 1 HETATM 5 C C6' BNG . . . M 2 40.394 -5.816 32.971 0.5 36.86 ? C6' BNG 185 B 1 HETATM 6 C C7' BNG . . . M 2 39.648 -7.102 33.305 0.5 39.08 ? C7' BNG 185 B 1 HETATM 7 C C8' BNG . . . M 2 38.743 -7.656 32.19 0.5 38.4 ? C8' BNG 185 B 1 HETATM 8 C C9' BNG . . . M 2 38.623 -9.171 32.314 0.5 39.26 ? C9' BNG 185 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #