data_3RLB
#
_model_server_result.job_id            VgbqaECiuSLWzSmUhtcbKg 
_model_server_result.datetime_utc      '2024-11-04 22:36:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rlb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":187}' 
#
_entry.id    3RLB 
#
_exptl.entry_id    3RLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              265.355 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.81 
_cell.angle_gamma         90 
_cell.entry_id            3RLB 
_cell.length_a            61.654 
_cell.length_b            84.654 
_cell.length_c            127.301 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,P 1 1 
B,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 O N N 
#
_chem_comp.formula           'C12 H17 N4 O S 1' 
_chem_comp.formula_weight    265.355 
_chem_comp.id                VIB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'THIAMIN;VITAMIN B1' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM2 C2A VIB sing 412 n n 
CM2 HM21 VIB sing 413 n n 
CM2 HM22 VIB sing 414 n n 
CM2 HM23 VIB sing 415 n n 
N4A C4A VIB sing 416 n n 
N4A H4A1 VIB sing 417 n n 
N4A H4A2 VIB sing 418 n n 
CM4 C4 VIB sing 419 n n 
CM4 HM41 VIB sing 420 n n 
CM4 HM42 VIB sing 421 n n 
CM4 HM43 VIB sing 422 n n 
O1 C7 VIB sing 423 n n 
O1 HO1 VIB sing 424 n n 
C7 C6 VIB sing 425 n n 
C7 HC71 VIB sing 426 n n 
C7 HC72 VIB sing 427 n n 
C6 C5 VIB sing 428 n n 
C6 HC61 VIB sing 429 n n 
C6 HC62 VIB sing 430 n n 
C2 S1 VIB sing 431 n y 
C2 N3 VIB doub 432 n y 
C2 HC2 VIB sing 433 n n 
S1 C5 VIB sing 434 n y 
C5 C4 VIB doub 435 n y 
C4 N3 VIB sing 436 n y 
N3 C7A VIB sing 437 n n 
C7A C5A VIB sing 438 n n 
C7A H7A1 VIB sing 439 n n 
C7A H7A2 VIB sing 440 n n 
C4A N3A VIB sing 441 n y 
C4A C5A VIB doub 442 n y 
N3A C2A VIB doub 443 n y 
C2A N1A VIB sing 444 n y 
N1A C6A VIB doub 445 n y 
C6A C5A VIB sing 446 n y 
C6A H6AC VIB sing 447 n n 
#
_atom_sites.entry_id                     3RLB 
_atom_sites.fract_transf_matrix[1][1]    0.01622 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00165 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BNG A 1 183 183 BNG BNG . 
D 2 BNG A 1 184 184 BNG BNG . 
E 2 BNG A 1 185 185 BNG BNG . 
F 2 BNG A 1 186 186 BNG BNG . 
G 2 BNG A 1 187 187 BNG BNG . 
H 2 BNG A 1 188 188 BNG BNG . 
I 2 BNG A 1 189 189 BNG BNG . 
J 3 VIB A 1 191 191 VIB VIB . 
K 2 BNG B 1 183 183 BNG BNG . 
L 2 BNG B 1 184 184 BNG BNG . 
M 2 BNG B 1 185 185 BNG BNG . 
N 2 BNG B 1 186 186 BNG BNG . 
O 3 VIB B 1 187 187 VIB VIB . 
P 4 HOH A 1 192 192 HOH HOH . 
P 4 HOH A 2 193 193 HOH HOH . 
P 4 HOH A 3 194 194 HOH HOH . 
P 4 HOH A 4 195 195 HOH HOH . 
P 4 HOH A 5 196 196 HOH HOH . 
P 4 HOH A 6 197 197 HOH HOH . 
P 4 HOH A 7 198 198 HOH HOH . 
P 4 HOH A 8 199 199 HOH HOH . 
P 4 HOH A 9 200 200 HOH HOH . 
P 4 HOH A 10 201 201 HOH HOH . 
P 4 HOH A 11 202 202 HOH HOH . 
P 4 HOH A 12 203 203 HOH HOH . 
P 4 HOH A 13 204 204 HOH HOH . 
P 4 HOH A 14 205 205 HOH HOH . 
P 4 HOH A 15 206 206 HOH HOH . 
P 4 HOH A 16 207 207 HOH HOH . 
P 4 HOH A 17 208 208 HOH HOH . 
P 4 HOH A 18 209 209 HOH HOH . 
P 4 HOH A 19 210 210 HOH HOH . 
P 4 HOH A 20 211 211 HOH HOH . 
P 4 HOH A 21 212 212 HOH HOH . 
P 4 HOH A 22 213 213 HOH HOH . 
P 4 HOH A 23 214 214 HOH HOH . 
P 4 HOH A 24 215 215 HOH HOH . 
P 4 HOH A 25 216 216 HOH HOH . 
P 4 HOH A 26 217 217 HOH HOH . 
P 4 HOH A 27 218 218 HOH HOH . 
P 4 HOH A 28 219 219 HOH HOH . 
P 4 HOH A 29 220 220 HOH HOH . 
P 4 HOH A 30 221 221 HOH HOH . 
P 4 HOH A 31 222 222 HOH HOH . 
P 4 HOH A 32 223 223 HOH HOH . 
P 4 HOH A 33 224 224 HOH HOH . 
P 4 HOH A 34 225 225 HOH HOH . 
P 4 HOH A 35 226 226 HOH HOH . 
P 4 HOH A 36 227 227 HOH HOH . 
P 4 HOH A 37 228 228 HOH HOH . 
Q 4 HOH B 1 188 188 HOH HOH . 
Q 4 HOH B 2 189 189 HOH HOH . 
Q 4 HOH B 3 190 190 HOH HOH . 
Q 4 HOH B 4 191 191 HOH HOH . 
Q 4 HOH B 5 192 192 HOH HOH . 
Q 4 HOH B 6 193 193 HOH HOH . 
Q 4 HOH B 7 194 194 HOH HOH . 
Q 4 HOH B 8 195 195 HOH HOH . 
Q 4 HOH B 9 196 196 HOH HOH . 
Q 4 HOH B 10 197 197 HOH HOH . 
Q 4 HOH B 11 198 198 HOH HOH . 
Q 4 HOH B 12 199 199 HOH HOH . 
Q 4 HOH B 13 200 200 HOH HOH . 
Q 4 HOH B 14 201 201 HOH HOH . 
Q 4 HOH B 15 202 202 HOH HOH . 
Q 4 HOH B 16 203 203 HOH HOH . 
Q 4 HOH B 17 204 204 HOH HOH . 
Q 4 HOH B 18 205 205 HOH HOH . 
Q 4 HOH B 19 206 206 HOH HOH . 
Q 4 HOH B 20 207 207 HOH HOH . 
Q 4 HOH B 21 208 208 HOH HOH . 
Q 4 HOH B 22 209 209 HOH HOH . 
Q 4 HOH B 23 211 211 HOH HOH . 
Q 4 HOH B 24 212 212 HOH HOH . 
Q 4 HOH B 25 213 213 HOH HOH . 
Q 4 HOH B 26 214 214 HOH HOH . 
Q 4 HOH B 27 215 215 HOH HOH . 
Q 4 HOH B 28 216 216 HOH HOH . 
Q 4 HOH B 29 217 217 HOH HOH . 
Q 4 HOH B 30 218 218 HOH HOH . 
Q 4 HOH B 31 219 219 HOH HOH . 
Q 4 HOH B 32 220 220 HOH HOH . 
Q 4 HOH B 33 221 221 HOH HOH . 
Q 4 HOH B 34 222 222 HOH HOH . 
Q 4 HOH B 35 223 223 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM2 VIB . . . O 3 41.646 -3.866 21.683 1 30.45 ? CM2 VIB 187 B 1 
HETATM 2 N N4A VIB . . . O 3 41.186 -7.661 18.888 1 29.55 ? N4A VIB 187 B 1 
HETATM 3 C CM4 VIB . . . O 3 38.48 -7.826 14.642 1 34.5 ? CM4 VIB 187 B 1 
HETATM 4 O O1 VIB . . . O 3 33.963 -9.577 16.416 1 50.13 ? O1 VIB 187 B 1 
HETATM 5 C C7 VIB . . . O 3 34.872 -9.243 15.371 1 44.11 ? C7 VIB 187 B 1 
HETATM 6 C C6 VIB . . . O 3 36.181 -9.9 15.781 1 39.56 ? C6 VIB 187 B 1 
HETATM 7 C C2 VIB . . . O 3 37.952 -7.511 18.251 1 30.65 ? C2 VIB 187 B 1 
HETATM 8 S S1 VIB . . . O 3 36.737 -8.741 18.202 1 35.18 ? S1 VIB 187 B 1 
HETATM 9 C C5 VIB . . . O 3 37.007 -8.861 16.505 1 33.93 ? C5 VIB 187 B 1 
HETATM 10 C C4 VIB . . . O 3 38.035 -7.939 16.06 1 33.96 ? C4 VIB 187 B 1 
HETATM 11 N N3 VIB . . . O 3 38.513 -7.207 17.087 1 32.76 ? N3 VIB 187 B 1 
HETATM 12 C C7A VIB . . . O 3 39.54 -6.204 16.901 1 31.52 ? C7A VIB 187 B 1 
HETATM 13 C C4A VIB . . . O 3 40.891 -6.361 19.049 1 31.69 ? C4A VIB 187 B 1 
HETATM 14 N N3A VIB . . . O 3 41.329 -5.781 20.153 1 33.5 ? N3A VIB 187 B 1 
HETATM 15 C C2A VIB . . . O 3 41.09 -4.47 20.418 1 35.75 ? C2A VIB 187 B 1 
HETATM 16 N N1A VIB . . . O 3 40.342 -3.726 19.567 1 34.94 ? N1A VIB 187 B 1 
HETATM 17 C C6A VIB . . . O 3 39.834 -4.277 18.452 1 34.21 ? C6A VIB 187 B 1 
HETATM 18 C C5A VIB . . . O 3 40.086 -5.621 18.167 1 33.5 ? C5A VIB 187 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#