data_3RLI # _model_server_result.job_id p-cFHa-cN4fwqTN4uKhPrw _model_server_result.datetime_utc '2025-06-23 18:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":5276}' # _entry.id 3RLI # _exptl.entry_id 3RLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.65 _cell.angle_gamma 90 _cell.entry_id 3RLI _cell.length_a 38.05 _cell.length_b 70.69 _cell.length_c 43.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 117 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 97 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id PMS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PMS _struct_conn.ptnr2_auth_seq_id 400 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.641 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 237 n n C1 H1C1 MRD sing 238 n n C1 H1C2 MRD sing 239 n n C1 H1C3 MRD sing 240 n n C2 O2 MRD sing 241 n n C2 CM MRD sing 242 n n C2 C3 MRD sing 243 n n O2 H2 MRD sing 244 n n CM HMC1 MRD sing 245 n n CM HMC2 MRD sing 246 n n CM HMC3 MRD sing 247 n n C3 C4 MRD sing 248 n n C3 H3C1 MRD sing 249 n n C3 H3C2 MRD sing 250 n n C4 O4 MRD sing 251 n n C4 C5 MRD sing 252 n n C4 H4 MRD sing 253 n n O4 HA MRD sing 254 n n C5 H5C1 MRD sing 255 n n C5 H5C2 MRD sing 256 n n C5 H5C3 MRD sing 257 n n # _atom_sites.entry_id 3RLI _atom_sites.fract_transf_matrix[1][1] 0.026281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010432 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD A 1 5276 5276 MRD MPD . C 3 PMS A 1 400 400 PMS PMS . D 4 HOH A 1 251 1 HOH HOH . D 4 HOH A 2 252 2 HOH HOH . D 4 HOH A 3 253 3 HOH HOH . D 4 HOH A 4 254 4 HOH HOH . D 4 HOH A 5 255 5 HOH HOH . D 4 HOH A 6 256 6 HOH HOH . D 4 HOH A 7 257 7 HOH HOH . D 4 HOH A 8 258 8 HOH HOH . D 4 HOH A 9 259 9 HOH HOH . D 4 HOH A 10 260 10 HOH HOH . D 4 HOH A 11 261 11 HOH HOH . D 4 HOH A 12 262 12 HOH HOH . D 4 HOH A 13 263 13 HOH HOH . D 4 HOH A 14 264 14 HOH HOH . D 4 HOH A 15 265 15 HOH HOH . D 4 HOH A 16 266 16 HOH HOH . D 4 HOH A 17 267 17 HOH HOH . D 4 HOH A 18 268 18 HOH HOH . D 4 HOH A 19 269 19 HOH HOH . D 4 HOH A 20 270 20 HOH HOH . D 4 HOH A 21 271 21 HOH HOH . D 4 HOH A 22 272 22 HOH HOH . D 4 HOH A 23 273 23 HOH HOH . D 4 HOH A 24 274 24 HOH HOH . D 4 HOH A 25 275 25 HOH HOH . D 4 HOH A 26 276 26 HOH HOH . D 4 HOH A 27 277 27 HOH HOH . D 4 HOH A 28 278 28 HOH HOH . D 4 HOH A 29 279 29 HOH HOH . D 4 HOH A 30 280 30 HOH HOH . D 4 HOH A 31 281 31 HOH HOH . D 4 HOH A 32 282 32 HOH HOH . D 4 HOH A 33 283 33 HOH HOH . D 4 HOH A 34 284 34 HOH HOH . D 4 HOH A 35 285 35 HOH HOH . D 4 HOH A 36 286 36 HOH HOH . D 4 HOH A 37 287 37 HOH HOH . D 4 HOH A 38 288 38 HOH HOH . D 4 HOH A 39 289 39 HOH HOH . D 4 HOH A 40 290 40 HOH HOH . D 4 HOH A 41 291 41 HOH HOH . D 4 HOH A 42 292 42 HOH HOH . D 4 HOH A 43 293 43 HOH HOH . D 4 HOH A 44 294 44 HOH HOH . D 4 HOH A 45 295 45 HOH HOH . D 4 HOH A 46 296 46 HOH HOH . D 4 HOH A 47 297 47 HOH HOH . D 4 HOH A 48 298 48 HOH HOH . D 4 HOH A 49 299 49 HOH HOH . D 4 HOH A 50 300 50 HOH HOH . D 4 HOH A 51 301 51 HOH HOH . D 4 HOH A 52 302 52 HOH HOH . D 4 HOH A 53 303 53 HOH HOH . D 4 HOH A 54 304 54 HOH HOH . D 4 HOH A 55 305 55 HOH HOH . D 4 HOH A 56 306 56 HOH HOH . D 4 HOH A 57 307 57 HOH HOH . D 4 HOH A 58 308 58 HOH HOH . D 4 HOH A 59 309 59 HOH HOH . D 4 HOH A 60 310 60 HOH HOH . D 4 HOH A 61 311 61 HOH HOH . D 4 HOH A 62 312 62 HOH HOH . D 4 HOH A 63 313 63 HOH HOH . D 4 HOH A 64 314 64 HOH HOH . D 4 HOH A 65 315 65 HOH HOH . D 4 HOH A 66 316 66 HOH HOH . D 4 HOH A 67 317 67 HOH HOH . D 4 HOH A 68 318 68 HOH HOH . D 4 HOH A 69 319 69 HOH HOH . D 4 HOH A 70 320 70 HOH HOH . D 4 HOH A 71 321 71 HOH HOH . D 4 HOH A 72 322 72 HOH HOH . D 4 HOH A 73 323 73 HOH HOH . D 4 HOH A 74 324 74 HOH HOH . D 4 HOH A 75 325 75 HOH HOH . D 4 HOH A 76 326 76 HOH HOH . D 4 HOH A 77 327 77 HOH HOH . D 4 HOH A 78 328 78 HOH HOH . D 4 HOH A 79 329 79 HOH HOH . D 4 HOH A 80 330 80 HOH HOH . D 4 HOH A 81 331 81 HOH HOH . D 4 HOH A 82 332 82 HOH HOH . D 4 HOH A 83 333 83 HOH HOH . D 4 HOH A 84 334 84 HOH HOH . D 4 HOH A 85 335 85 HOH HOH . D 4 HOH A 86 336 86 HOH HOH . D 4 HOH A 87 337 87 HOH HOH . D 4 HOH A 88 338 88 HOH HOH . D 4 HOH A 89 339 89 HOH HOH . D 4 HOH A 90 340 90 HOH HOH . D 4 HOH A 91 341 91 HOH HOH . D 4 HOH A 92 342 92 HOH HOH . D 4 HOH A 93 343 93 HOH HOH . D 4 HOH A 94 344 94 HOH HOH . D 4 HOH A 95 345 95 HOH HOH . D 4 HOH A 96 346 96 HOH HOH . D 4 HOH A 97 347 97 HOH HOH . D 4 HOH A 98 348 98 HOH HOH . D 4 HOH A 99 349 99 HOH HOH . D 4 HOH A 100 350 100 HOH HOH . D 4 HOH A 101 351 101 HOH HOH . D 4 HOH A 102 352 102 HOH HOH . D 4 HOH A 103 353 103 HOH HOH . D 4 HOH A 104 354 104 HOH HOH . D 4 HOH A 105 355 105 HOH HOH . D 4 HOH A 106 356 106 HOH HOH . D 4 HOH A 107 357 107 HOH HOH . D 4 HOH A 108 358 108 HOH HOH . D 4 HOH A 109 359 109 HOH HOH . D 4 HOH A 110 360 110 HOH HOH . D 4 HOH A 111 361 111 HOH HOH . D 4 HOH A 112 362 112 HOH HOH . D 4 HOH A 113 363 113 HOH HOH . D 4 HOH A 114 364 114 HOH HOH . D 4 HOH A 115 365 115 HOH HOH . D 4 HOH A 116 366 116 HOH HOH . D 4 HOH A 117 367 117 HOH HOH . D 4 HOH A 118 368 118 HOH HOH . D 4 HOH A 119 369 119 HOH HOH . D 4 HOH A 120 370 120 HOH HOH . D 4 HOH A 121 371 121 HOH HOH . D 4 HOH A 122 372 122 HOH HOH . D 4 HOH A 123 373 123 HOH HOH . D 4 HOH A 124 374 124 HOH HOH . D 4 HOH A 125 375 125 HOH HOH . D 4 HOH A 126 376 126 HOH HOH . D 4 HOH A 127 377 127 HOH HOH . D 4 HOH A 128 378 128 HOH HOH . D 4 HOH A 129 379 129 HOH HOH . D 4 HOH A 130 380 130 HOH HOH . D 4 HOH A 131 381 131 HOH HOH . D 4 HOH A 132 382 132 HOH HOH . D 4 HOH A 133 383 133 HOH HOH . D 4 HOH A 134 384 134 HOH HOH . D 4 HOH A 135 385 135 HOH HOH . D 4 HOH A 136 386 136 HOH HOH . D 4 HOH A 137 387 137 HOH HOH . D 4 HOH A 138 388 138 HOH HOH . D 4 HOH A 139 389 139 HOH HOH . D 4 HOH A 140 390 140 HOH HOH . D 4 HOH A 141 391 141 HOH HOH . D 4 HOH A 142 392 142 HOH HOH . D 4 HOH A 143 393 143 HOH HOH . D 4 HOH A 144 394 144 HOH HOH . D 4 HOH A 145 395 145 HOH HOH . D 4 HOH A 146 396 146 HOH HOH . D 4 HOH A 147 397 147 HOH HOH . D 4 HOH A 148 398 148 HOH HOH . D 4 HOH A 149 399 149 HOH HOH . D 4 HOH A 150 401 150 HOH HOH . D 4 HOH A 151 402 151 HOH HOH . D 4 HOH A 152 403 152 HOH HOH . D 4 HOH A 153 404 153 HOH HOH . D 4 HOH A 154 405 154 HOH HOH . D 4 HOH A 155 406 155 HOH HOH . D 4 HOH A 156 407 156 HOH HOH . D 4 HOH A 157 408 157 HOH HOH . D 4 HOH A 158 409 158 HOH HOH . D 4 HOH A 159 410 159 HOH HOH . D 4 HOH A 160 411 160 HOH HOH . D 4 HOH A 161 412 161 HOH HOH . D 4 HOH A 162 413 162 HOH HOH . D 4 HOH A 163 414 163 HOH HOH . D 4 HOH A 164 415 164 HOH HOH . D 4 HOH A 165 416 165 HOH HOH . D 4 HOH A 166 417 166 HOH HOH . D 4 HOH A 167 418 167 HOH HOH . D 4 HOH A 168 419 168 HOH HOH . D 4 HOH A 169 420 169 HOH HOH . D 4 HOH A 170 421 170 HOH HOH . D 4 HOH A 171 422 171 HOH HOH . D 4 HOH A 172 423 172 HOH HOH . D 4 HOH A 173 424 173 HOH HOH . D 4 HOH A 174 425 174 HOH HOH . D 4 HOH A 175 426 175 HOH HOH . D 4 HOH A 176 427 176 HOH HOH . D 4 HOH A 177 428 177 HOH HOH . D 4 HOH A 178 429 178 HOH HOH . D 4 HOH A 179 430 179 HOH HOH . D 4 HOH A 180 431 180 HOH HOH . D 4 HOH A 181 432 181 HOH HOH . D 4 HOH A 182 433 182 HOH HOH . D 4 HOH A 183 434 183 HOH HOH . D 4 HOH A 184 435 184 HOH HOH . D 4 HOH A 185 436 185 HOH HOH . D 4 HOH A 186 437 186 HOH HOH . D 4 HOH A 187 438 187 HOH HOH . D 4 HOH A 188 439 188 HOH HOH . D 4 HOH A 189 440 189 HOH HOH . D 4 HOH A 190 441 190 HOH HOH . D 4 HOH A 191 442 191 HOH HOH . D 4 HOH A 192 443 192 HOH HOH . D 4 HOH A 193 444 193 HOH HOH . D 4 HOH A 194 445 194 HOH HOH . D 4 HOH A 195 446 195 HOH HOH . D 4 HOH A 196 447 196 HOH HOH . D 4 HOH A 197 448 197 HOH HOH . D 4 HOH A 198 449 198 HOH HOH . D 4 HOH A 199 450 199 HOH HOH . D 4 HOH A 200 451 200 HOH HOH . D 4 HOH A 201 452 201 HOH HOH . D 4 HOH A 202 453 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . B 2 7.588 -16.045 24.58 1 8.88 ? C1 MRD 5276 A 1 HETATM 2 C C2 MRD . . . B 2 9.092 -15.958 24.509 1 16.8 ? C2 MRD 5276 A 1 HETATM 3 O O2 MRD . . . B 2 9.458 -14.559 24.675 1 24.77 ? O2 MRD 5276 A 1 HETATM 4 C CM MRD . . . B 2 9.694 -16.729 25.68 1 16.86 ? CM MRD 5276 A 1 HETATM 5 C C3 MRD . . . B 2 9.625 -16.544 23.195 1 15.28 ? C3 MRD 5276 A 1 HETATM 6 C C4 MRD . . . B 2 8.997 -16.049 21.892 1 12.71 ? C4 MRD 5276 A 1 HETATM 7 O O4 MRD . . . B 2 7.631 -16.382 21.807 1 10.76 ? O4 MRD 5276 A 1 HETATM 8 C C5 MRD . . . B 2 9.687 -16.672 20.688 1 10.19 ? C5 MRD 5276 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #