data_3RMI # _model_server_result.job_id sVkGTAm8SOF-EIAaBlbZiA _model_server_result.datetime_utc '2024-11-29 14:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":112}' # _entry.id 3RMI # _exptl.entry_id 3RMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RMI _cell.length_a 71.32 _cell.length_b 71.32 _cell.length_c 145.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -48.613333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 3RMI _atom_sites.fract_transf_matrix[1][1] 0.014021 _atom_sites.fract_transf_matrix[1][2] 0.008095 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 111 1 EDO EDO . C 3 GOL A 1 112 1 GOL GOL . D 4 MLT A 1 113 1 MLT MLT . E 5 HOH A 1 114 1 HOH HOH . E 5 HOH A 2 115 2 HOH HOH . E 5 HOH A 3 116 3 HOH HOH . E 5 HOH A 4 117 4 HOH HOH . E 5 HOH A 5 118 5 HOH HOH . E 5 HOH A 6 119 6 HOH HOH . E 5 HOH A 7 120 7 HOH HOH . E 5 HOH A 8 121 8 HOH HOH . E 5 HOH A 9 122 9 HOH HOH . E 5 HOH A 10 123 10 HOH HOH . E 5 HOH A 11 124 11 HOH HOH . E 5 HOH A 12 125 12 HOH HOH . E 5 HOH A 13 126 13 HOH HOH . E 5 HOH A 14 127 14 HOH HOH . E 5 HOH A 15 128 15 HOH HOH . E 5 HOH A 16 129 16 HOH HOH . E 5 HOH A 17 130 17 HOH HOH . E 5 HOH A 18 131 18 HOH HOH . E 5 HOH A 19 132 19 HOH HOH . E 5 HOH A 20 133 20 HOH HOH . E 5 HOH A 21 134 21 HOH HOH . E 5 HOH A 22 135 22 HOH HOH . E 5 HOH A 23 136 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 21.011 14.518 -52.152 1 73.08 ? C1 GOL 112 A 1 HETATM 2 O O1 GOL . . . C 3 20.684 15.696 -52.854 1 71.26 ? O1 GOL 112 A 1 HETATM 3 C C2 GOL . . . C 3 22.193 13.804 -52.813 1 73.37 ? C2 GOL 112 A 1 HETATM 4 O O2 GOL . . . C 3 21.992 13.782 -54.221 1 73.94 ? O2 GOL 112 A 1 HETATM 5 C C3 GOL . . . C 3 22.333 12.385 -52.249 1 72.4 ? C3 GOL 112 A 1 HETATM 6 O O3 GOL . . . C 3 23.186 12.383 -51.135 1 71.31 ? O3 GOL 112 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #