data_3RMI # _model_server_result.job_id bvbH5Mx-7BVF5v2H15QADg _model_server_result.datetime_utc '2024-11-26 01:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":113}' # _entry.id 3RMI # _exptl.entry_id 3RMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RMI _cell.length_a 71.32 _cell.length_b 71.32 _cell.length_c 145.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -48.613333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 259 n n C1 O2 MLT sing 260 n n C1 C2 MLT sing 261 n n C2 O3 MLT sing 262 n n C2 C3 MLT sing 263 n n C2 H2 MLT sing 264 n n O3 HO3 MLT sing 265 n n C3 C4 MLT sing 266 n n C3 H31 MLT sing 267 n n C3 H32 MLT sing 268 n n C4 O4 MLT doub 269 n n C4 O5 MLT sing 270 n n O5 HO5 MLT sing 271 n n O2 H6 MLT sing 272 n n # _atom_sites.entry_id 3RMI _atom_sites.fract_transf_matrix[1][1] 0.014021 _atom_sites.fract_transf_matrix[1][2] 0.008095 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 111 1 EDO EDO . C 3 GOL A 1 112 1 GOL GOL . D 4 MLT A 1 113 1 MLT MLT . E 5 HOH A 1 114 1 HOH HOH . E 5 HOH A 2 115 2 HOH HOH . E 5 HOH A 3 116 3 HOH HOH . E 5 HOH A 4 117 4 HOH HOH . E 5 HOH A 5 118 5 HOH HOH . E 5 HOH A 6 119 6 HOH HOH . E 5 HOH A 7 120 7 HOH HOH . E 5 HOH A 8 121 8 HOH HOH . E 5 HOH A 9 122 9 HOH HOH . E 5 HOH A 10 123 10 HOH HOH . E 5 HOH A 11 124 11 HOH HOH . E 5 HOH A 12 125 12 HOH HOH . E 5 HOH A 13 126 13 HOH HOH . E 5 HOH A 14 127 14 HOH HOH . E 5 HOH A 15 128 15 HOH HOH . E 5 HOH A 16 129 16 HOH HOH . E 5 HOH A 17 130 17 HOH HOH . E 5 HOH A 18 131 18 HOH HOH . E 5 HOH A 19 132 19 HOH HOH . E 5 HOH A 20 133 20 HOH HOH . E 5 HOH A 21 134 21 HOH HOH . E 5 HOH A 22 135 22 HOH HOH . E 5 HOH A 23 136 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 4 16.477 16.628 -39.143 1 52.29 ? C1 MLT 113 A 1 HETATM 2 O O1 MLT . . . D 4 16.711 16.082 -40.265 1 53.23 ? O1 MLT 113 A 1 HETATM 3 O O2 MLT . . . D 4 15.447 16.239 -38.612 1 57.74 ? O2 MLT 113 A 1 HETATM 4 C C2 MLT . . . D 4 17.347 17.689 -38.506 1 49.34 ? C2 MLT 113 A 1 HETATM 5 O O3 MLT . . . D 4 18.613 17.397 -39.013 1 47.98 ? O3 MLT 113 A 1 HETATM 6 C C3 MLT . . . D 4 17.568 17.847 -36.999 1 50.42 ? C3 MLT 113 A 1 HETATM 7 C C4 MLT . . . D 4 16.597 17.184 -36.001 1 54.93 ? C4 MLT 113 A 1 HETATM 8 O O4 MLT . . . D 4 16.381 15.916 -36.005 1 59.92 ? O4 MLT 113 A 1 HETATM 9 O O5 MLT . . . D 4 16.037 17.873 -35.102 1 48.46 ? O5 MLT 113 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #