data_3RMS
#
_model_server_result.job_id            eldoOG5ttyQdy-D8ueFhXA 
_model_server_result.datetime_utc      '2025-03-04 15:26:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":115}' 
#
_entry.id    3RMS 
#
_exptl.entry_id    3RMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.77 
_cell.angle_gamma         90 
_cell.entry_id            3RMS 
_cell.length_a            44.63 
_cell.length_b            60.968 
_cell.length_c            73.209 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,M 1 1 
B,F,G,H,I,J,N 2 1 
C,K,L,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 112 A ARG 109 1_555 A N MSE 113 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C MSE 4 B MSE 1 1_555 B N GLN 5 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 B C ARG 112 B ARG 109 1_555 B N MSE 113 B MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A ND1 HIS 17 A HIS 14 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc2 A SG CYS 36 A CYS 33 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 A SG CYS 59 A CYS 56 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc4 A SG CYS 62 A CYS 59 1_555 D ZN ZN . A ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc5 B ND1 HIS 17 B HIS 14 1_555 F ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc6 B SG CYS 36 B CYS 33 1_555 F ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc7 B SG CYS 59 B CYS 56 1_555 F ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc8 B SG CYS 62 B CYS 59 1_555 F ZN ZN . B ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc9 C ND1 HIS 17 C HIS 14 1_555 K ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc10 C SG CYS 36 C CYS 33 1_555 K ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc11 C SG CYS 59 C CYS 56 1_555 K ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc12 C SG CYS 62 C CYS 59 1_555 K ZN ZN . C ZN 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3RMS 
_atom_sites.fract_transf_matrix[1][1]    0.022406 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002658 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 114 1 ZN ZN . 
E 3 GOL A 1 115 11 GOL GOL . 
F 2 ZN B 1 114 1 ZN ZN . 
G 3 GOL B 1 115 1 GOL GOL . 
H 3 GOL B 1 116 21 GOL GOL . 
I 3 GOL B 1 117 31 GOL GOL . 
J 3 GOL B 1 118 61 GOL GOL . 
K 2 ZN C 1 114 1 ZN ZN . 
L 3 GOL C 1 115 41 GOL GOL . 
M 4 HOH A 1 116 4 HOH HOH . 
M 4 HOH A 2 117 6 HOH HOH . 
M 4 HOH A 3 118 12 HOH HOH . 
M 4 HOH A 4 119 19 HOH HOH . 
M 4 HOH A 5 120 20 HOH HOH . 
M 4 HOH A 6 121 21 HOH HOH . 
M 4 HOH A 7 122 26 HOH HOH . 
M 4 HOH A 8 123 28 HOH HOH . 
M 4 HOH A 9 124 33 HOH HOH . 
M 4 HOH A 10 125 36 HOH HOH . 
M 4 HOH A 11 126 38 HOH HOH . 
M 4 HOH A 12 127 39 HOH HOH . 
M 4 HOH A 13 128 40 HOH HOH . 
M 4 HOH A 14 129 43 HOH HOH . 
M 4 HOH A 15 130 44 HOH HOH . 
M 4 HOH A 16 131 46 HOH HOH . 
M 4 HOH A 17 132 49 HOH HOH . 
M 4 HOH A 18 133 50 HOH HOH . 
M 4 HOH A 19 134 51 HOH HOH . 
M 4 HOH A 20 135 55 HOH HOH . 
M 4 HOH A 21 136 59 HOH HOH . 
M 4 HOH A 22 137 61 HOH HOH . 
M 4 HOH A 23 138 62 HOH HOH . 
N 4 HOH B 1 119 2 HOH HOH . 
N 4 HOH B 2 120 3 HOH HOH . 
N 4 HOH B 3 121 8 HOH HOH . 
N 4 HOH B 4 122 9 HOH HOH . 
N 4 HOH B 5 123 10 HOH HOH . 
N 4 HOH B 6 124 17 HOH HOH . 
N 4 HOH B 7 125 23 HOH HOH . 
N 4 HOH B 8 126 30 HOH HOH . 
N 4 HOH B 9 127 34 HOH HOH . 
N 4 HOH B 10 128 35 HOH HOH . 
N 4 HOH B 11 129 41 HOH HOH . 
N 4 HOH B 12 130 42 HOH HOH . 
N 4 HOH B 13 131 45 HOH HOH . 
N 4 HOH B 14 132 47 HOH HOH . 
N 4 HOH B 15 133 48 HOH HOH . 
N 4 HOH B 16 134 52 HOH HOH . 
N 4 HOH B 17 135 53 HOH HOH . 
N 4 HOH B 18 136 54 HOH HOH . 
N 4 HOH B 19 137 63 HOH HOH . 
N 4 HOH B 20 138 64 HOH HOH . 
N 4 HOH B 21 139 65 HOH HOH . 
N 4 HOH B 22 140 66 HOH HOH . 
N 4 HOH B 23 141 67 HOH HOH . 
O 4 HOH C 1 116 1 HOH HOH . 
O 4 HOH C 2 117 5 HOH HOH . 
O 4 HOH C 3 118 7 HOH HOH . 
O 4 HOH C 4 119 11 HOH HOH . 
O 4 HOH C 5 120 13 HOH HOH . 
O 4 HOH C 6 121 14 HOH HOH . 
O 4 HOH C 7 122 15 HOH HOH . 
O 4 HOH C 8 123 16 HOH HOH . 
O 4 HOH C 9 124 18 HOH HOH . 
O 4 HOH C 10 125 22 HOH HOH . 
O 4 HOH C 11 126 24 HOH HOH . 
O 4 HOH C 12 127 25 HOH HOH . 
O 4 HOH C 13 128 27 HOH HOH . 
O 4 HOH C 14 129 29 HOH HOH . 
O 4 HOH C 15 130 31 HOH HOH . 
O 4 HOH C 16 131 32 HOH HOH . 
O 4 HOH C 17 132 37 HOH HOH . 
O 4 HOH C 18 133 56 HOH HOH . 
O 4 HOH C 19 134 57 HOH HOH . 
O 4 HOH C 20 135 58 HOH HOH . 
O 4 HOH C 21 136 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -7.116 5.17 -22.973 1 56.47 ? C1 GOL 115 B 1 
HETATM 2 O O1 GOL . . . G 3 -6.019 5.201 -23.866 1 60.87 ? O1 GOL 115 B 1 
HETATM 3 C C2 GOL . . . G 3 -6.831 4.214 -21.829 1 55.62 ? C2 GOL 115 B 1 
HETATM 4 O O2 GOL . . . G 3 -7.588 3.044 -22.033 1 55.13 ? O2 GOL 115 B 1 
HETATM 5 C C3 GOL . . . G 3 -5.349 3.837 -21.737 1 54.59 ? C3 GOL 115 B 1 
HETATM 6 O O3 GOL . . . G 3 -4.538 4.946 -21.402 1 53.86 ? O3 GOL 115 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#