data_3RMV # _model_server_result.job_id VbKHrwEF9YNjm9bOUQI8_Q _model_server_result.datetime_utc '2024-11-16 07:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":265}' # _entry.id 3RMV # _exptl.entry_id 3RMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RMV _cell.length_a 56.68 _cell.length_b 100.72 _cell.length_c 48.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 56.68 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 103 A ASP 102 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc2 A OD1 ASP 105 A ASP 104 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD2 ASP 105 A ASP 104 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 A OE2 GLU 156 A GLU 155 1_555 F MG MG . A MG 267 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.917 ? metalc ? metalc5 A OE2 GLU 156 A GLU 155 1_555 F MG MG . A MG 267 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 A NE2 HIS 213 A HIS 212 1_555 B MN MN . A MN 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 B MN MN . A MN 263 1_555 C O1A UDP . A UDP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc8 B MN MN . A MN 263 1_555 C O3B UDP . A UDP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 F MG MG . A MG 267 1_555 G O HOH . A HOH 469 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc10 F MG MG . A MG 267 1_555 G O HOH . A HOH 472 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc11 F MG MG . A MG 267 1_555 G O HOH . A HOH 472 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3RMV _atom_sites.fract_transf_matrix[1][1] 0.017643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 263 1 MN MN . C 3 UDP A 1 264 1 UDP UDP . D 4 EDO A 1 265 1 EDO EDO . E 4 EDO A 1 266 1 EDO EDO . F 5 MG A 1 267 1 MG MG . G 6 HOH A 1 268 1 HOH HOH . G 6 HOH A 2 269 2 HOH HOH . G 6 HOH A 3 270 3 HOH HOH . G 6 HOH A 4 271 4 HOH HOH . G 6 HOH A 5 272 5 HOH HOH . G 6 HOH A 6 273 6 HOH HOH . G 6 HOH A 7 274 7 HOH HOH . G 6 HOH A 8 275 8 HOH HOH . G 6 HOH A 9 276 9 HOH HOH . G 6 HOH A 10 277 10 HOH HOH . G 6 HOH A 11 278 11 HOH HOH . G 6 HOH A 12 279 12 HOH HOH . G 6 HOH A 13 280 13 HOH HOH . G 6 HOH A 14 281 14 HOH HOH . G 6 HOH A 15 282 15 HOH HOH . G 6 HOH A 16 283 16 HOH HOH . G 6 HOH A 17 284 17 HOH HOH . G 6 HOH A 18 285 18 HOH HOH . G 6 HOH A 19 286 21 HOH HOH . G 6 HOH A 20 287 22 HOH HOH . G 6 HOH A 21 288 23 HOH HOH . G 6 HOH A 22 289 24 HOH HOH . G 6 HOH A 23 290 25 HOH HOH . G 6 HOH A 24 291 26 HOH HOH . G 6 HOH A 25 292 27 HOH HOH . G 6 HOH A 26 293 28 HOH HOH . G 6 HOH A 27 294 29 HOH HOH . G 6 HOH A 28 295 30 HOH HOH . G 6 HOH A 29 296 31 HOH HOH . G 6 HOH A 30 297 32 HOH HOH . G 6 HOH A 31 298 33 HOH HOH . G 6 HOH A 32 299 34 HOH HOH . G 6 HOH A 33 300 35 HOH HOH . G 6 HOH A 34 301 36 HOH HOH . G 6 HOH A 35 302 37 HOH HOH . G 6 HOH A 36 303 38 HOH HOH . G 6 HOH A 37 304 39 HOH HOH . G 6 HOH A 38 305 40 HOH HOH . G 6 HOH A 39 306 41 HOH HOH . G 6 HOH A 40 307 42 HOH HOH . G 6 HOH A 41 308 43 HOH HOH . G 6 HOH A 42 309 44 HOH HOH . G 6 HOH A 43 310 45 HOH HOH . G 6 HOH A 44 311 46 HOH HOH . G 6 HOH A 45 312 47 HOH HOH . G 6 HOH A 46 313 48 HOH HOH . G 6 HOH A 47 314 49 HOH HOH . G 6 HOH A 48 315 50 HOH HOH . G 6 HOH A 49 316 51 HOH HOH . G 6 HOH A 50 317 52 HOH HOH . G 6 HOH A 51 318 53 HOH HOH . G 6 HOH A 52 319 54 HOH HOH . G 6 HOH A 53 320 55 HOH HOH . G 6 HOH A 54 321 56 HOH HOH . G 6 HOH A 55 322 57 HOH HOH . G 6 HOH A 56 323 58 HOH HOH . G 6 HOH A 57 324 59 HOH HOH . G 6 HOH A 58 325 60 HOH HOH . G 6 HOH A 59 326 61 HOH HOH . G 6 HOH A 60 327 62 HOH HOH . G 6 HOH A 61 328 63 HOH HOH . G 6 HOH A 62 329 64 HOH HOH . G 6 HOH A 63 330 65 HOH HOH . G 6 HOH A 64 331 66 HOH HOH . G 6 HOH A 65 332 67 HOH HOH . G 6 HOH A 66 333 68 HOH HOH . G 6 HOH A 67 334 70 HOH HOH . G 6 HOH A 68 335 71 HOH HOH . G 6 HOH A 69 336 72 HOH HOH . G 6 HOH A 70 337 73 HOH HOH . G 6 HOH A 71 338 75 HOH HOH . G 6 HOH A 72 339 76 HOH HOH . G 6 HOH A 73 340 77 HOH HOH . G 6 HOH A 74 341 78 HOH HOH . G 6 HOH A 75 342 79 HOH HOH . G 6 HOH A 76 343 80 HOH HOH . G 6 HOH A 77 344 81 HOH HOH . G 6 HOH A 78 345 82 HOH HOH . G 6 HOH A 79 346 83 HOH HOH . G 6 HOH A 80 347 84 HOH HOH . G 6 HOH A 81 348 86 HOH HOH . G 6 HOH A 82 349 87 HOH HOH . G 6 HOH A 83 350 88 HOH HOH . G 6 HOH A 84 351 91 HOH HOH . G 6 HOH A 85 352 92 HOH HOH . G 6 HOH A 86 353 93 HOH HOH . G 6 HOH A 87 354 94 HOH HOH . G 6 HOH A 88 355 95 HOH HOH . G 6 HOH A 89 356 96 HOH HOH . G 6 HOH A 90 357 97 HOH HOH . G 6 HOH A 91 358 98 HOH HOH . G 6 HOH A 92 359 99 HOH HOH . G 6 HOH A 93 360 100 HOH HOH . G 6 HOH A 94 361 101 HOH HOH . G 6 HOH A 95 362 102 HOH HOH . G 6 HOH A 96 363 103 HOH HOH . G 6 HOH A 97 364 104 HOH HOH . G 6 HOH A 98 365 105 HOH HOH . G 6 HOH A 99 366 106 HOH HOH . G 6 HOH A 100 367 107 HOH HOH . G 6 HOH A 101 368 108 HOH HOH . G 6 HOH A 102 369 109 HOH HOH . G 6 HOH A 103 370 111 HOH HOH . G 6 HOH A 104 371 112 HOH HOH . G 6 HOH A 105 372 113 HOH HOH . G 6 HOH A 106 373 114 HOH HOH . G 6 HOH A 107 374 115 HOH HOH . G 6 HOH A 108 375 116 HOH HOH . G 6 HOH A 109 376 117 HOH HOH . G 6 HOH A 110 377 118 HOH HOH . G 6 HOH A 111 378 120 HOH HOH . G 6 HOH A 112 379 121 HOH HOH . G 6 HOH A 113 380 122 HOH HOH . G 6 HOH A 114 381 123 HOH HOH . G 6 HOH A 115 382 124 HOH HOH . G 6 HOH A 116 383 126 HOH HOH . G 6 HOH A 117 384 127 HOH HOH . G 6 HOH A 118 385 129 HOH HOH . G 6 HOH A 119 386 130 HOH HOH . G 6 HOH A 120 387 131 HOH HOH . G 6 HOH A 121 388 133 HOH HOH . G 6 HOH A 122 389 134 HOH HOH . G 6 HOH A 123 390 135 HOH HOH . G 6 HOH A 124 391 136 HOH HOH . G 6 HOH A 125 392 137 HOH HOH . G 6 HOH A 126 393 139 HOH HOH . G 6 HOH A 127 394 140 HOH HOH . G 6 HOH A 128 395 143 HOH HOH . G 6 HOH A 129 396 144 HOH HOH . G 6 HOH A 130 397 145 HOH HOH . G 6 HOH A 131 398 146 HOH HOH . G 6 HOH A 132 399 147 HOH HOH . G 6 HOH A 133 400 148 HOH HOH . G 6 HOH A 134 401 150 HOH HOH . G 6 HOH A 135 402 151 HOH HOH . G 6 HOH A 136 403 152 HOH HOH . G 6 HOH A 137 404 154 HOH HOH . G 6 HOH A 138 405 155 HOH HOH . G 6 HOH A 139 406 157 HOH HOH . G 6 HOH A 140 407 158 HOH HOH . G 6 HOH A 141 408 159 HOH HOH . G 6 HOH A 142 409 160 HOH HOH . G 6 HOH A 143 410 163 HOH HOH . G 6 HOH A 144 411 164 HOH HOH . G 6 HOH A 145 412 165 HOH HOH . G 6 HOH A 146 413 166 HOH HOH . G 6 HOH A 147 414 167 HOH HOH . G 6 HOH A 148 415 168 HOH HOH . G 6 HOH A 149 416 172 HOH HOH . G 6 HOH A 150 417 173 HOH HOH . G 6 HOH A 151 418 174 HOH HOH . G 6 HOH A 152 419 175 HOH HOH . G 6 HOH A 153 420 176 HOH HOH . G 6 HOH A 154 421 177 HOH HOH . G 6 HOH A 155 422 178 HOH HOH . G 6 HOH A 156 423 179 HOH HOH . G 6 HOH A 157 424 180 HOH HOH . G 6 HOH A 158 425 181 HOH HOH . G 6 HOH A 159 426 182 HOH HOH . G 6 HOH A 160 427 183 HOH HOH . G 6 HOH A 161 428 184 HOH HOH . G 6 HOH A 162 429 185 HOH HOH . G 6 HOH A 163 430 186 HOH HOH . G 6 HOH A 164 431 187 HOH HOH . G 6 HOH A 165 432 188 HOH HOH . G 6 HOH A 166 433 189 HOH HOH . G 6 HOH A 167 434 191 HOH HOH . G 6 HOH A 168 435 192 HOH HOH . G 6 HOH A 169 436 193 HOH HOH . G 6 HOH A 170 437 194 HOH HOH . G 6 HOH A 171 438 195 HOH HOH . G 6 HOH A 172 439 196 HOH HOH . G 6 HOH A 173 440 197 HOH HOH . G 6 HOH A 174 441 198 HOH HOH . G 6 HOH A 175 442 199 HOH HOH . G 6 HOH A 176 443 200 HOH HOH . G 6 HOH A 177 444 201 HOH HOH . G 6 HOH A 178 445 202 HOH HOH . G 6 HOH A 179 446 203 HOH HOH . G 6 HOH A 180 447 204 HOH HOH . G 6 HOH A 181 448 205 HOH HOH . G 6 HOH A 182 449 206 HOH HOH . G 6 HOH A 183 450 207 HOH HOH . G 6 HOH A 184 451 208 HOH HOH . G 6 HOH A 185 452 209 HOH HOH . G 6 HOH A 186 453 210 HOH HOH . G 6 HOH A 187 454 211 HOH HOH . G 6 HOH A 188 455 212 HOH HOH . G 6 HOH A 189 456 213 HOH HOH . G 6 HOH A 190 457 214 HOH HOH . G 6 HOH A 191 458 215 HOH HOH . G 6 HOH A 192 459 216 HOH HOH . G 6 HOH A 193 460 219 HOH HOH . G 6 HOH A 194 461 220 HOH HOH . G 6 HOH A 195 462 221 HOH HOH . G 6 HOH A 196 463 222 HOH HOH . G 6 HOH A 197 464 223 HOH HOH . G 6 HOH A 198 465 225 HOH HOH . G 6 HOH A 199 466 227 HOH HOH . G 6 HOH A 200 467 228 HOH HOH . G 6 HOH A 201 468 229 HOH HOH . G 6 HOH A 202 469 230 HOH HOH . G 6 HOH A 203 470 231 HOH HOH . G 6 HOH A 204 471 232 HOH HOH . G 6 HOH A 205 472 233 HOH HOH . G 6 HOH A 206 473 234 HOH HOH . G 6 HOH A 207 474 235 HOH HOH . G 6 HOH A 208 475 236 HOH HOH . G 6 HOH A 209 476 237 HOH HOH . G 6 HOH A 210 477 238 HOH HOH . G 6 HOH A 211 478 239 HOH HOH . G 6 HOH A 212 479 240 HOH HOH . G 6 HOH A 213 480 241 HOH HOH . G 6 HOH A 214 481 242 HOH HOH . G 6 HOH A 215 482 243 HOH HOH . G 6 HOH A 216 483 244 HOH HOH . G 6 HOH A 217 484 245 HOH HOH . G 6 HOH A 218 485 246 HOH HOH . G 6 HOH A 219 486 247 HOH HOH . G 6 HOH A 220 487 248 HOH HOH . G 6 HOH A 221 488 250 HOH HOH . G 6 HOH A 222 489 251 HOH HOH . G 6 HOH A 223 490 252 HOH HOH . G 6 HOH A 224 491 253 HOH HOH . G 6 HOH A 225 492 254 HOH HOH . G 6 HOH A 226 493 255 HOH HOH . G 6 HOH A 227 494 256 HOH HOH . G 6 HOH A 228 495 257 HOH HOH . G 6 HOH A 229 496 258 HOH HOH . G 6 HOH A 230 497 260 HOH HOH . G 6 HOH A 231 498 261 HOH HOH . G 6 HOH A 232 499 262 HOH HOH . G 6 HOH A 233 500 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 27.868 12.046 23.97 1 45.11 ? C1 EDO 265 A 1 HETATM 2 O O1 EDO . . . D 4 26.928 11.889 25.038 1 28.7 ? O1 EDO 265 A 1 HETATM 3 C C2 EDO . . . D 4 28.429 10.701 23.515 1 44.35 ? C2 EDO 265 A 1 HETATM 4 O O2 EDO . . . D 4 27.391 9.765 23.16 1 32.28 ? O2 EDO 265 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #