data_3RN2
#
_model_server_result.job_id            bYF832xh1SLiosThj2RO3Q 
_model_server_result.datetime_utc      '2025-04-06 22:46:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rn2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3}' 
#
_entry.id    3RN2 
#
_exptl.entry_id    3RN2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.73 
_cell.angle_gamma         90 
_cell.entry_id            3RN2 
_cell.length_a            58.56 
_cell.length_b            74.77 
_cell.length_c            65.52 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RN2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 C N3 DC 1 K DC 1 1_555 D N1 DG 20 L DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 C N4 DC 1 K DC 1 1_555 D O6 DG 20 L DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 C O2 DC 1 K DC 1 1_555 D N2 DG 20 L DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 C N3 DC 2 K DC 2 1_555 D N1 DG 19 L DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 C N4 DC 2 K DC 2 1_555 D O6 DG 19 L DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 C O2 DC 2 K DC 2 1_555 D N2 DG 19 L DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 C N1 DA 3 K DA 3 1_555 D N3 DT 18 L DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 C N6 DA 3 K DA 3 1_555 D O4 DT 18 L DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 C N3 DT 4 K DT 4 1_555 D N1 DA 17 L DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 C O4 DT 4 K DT 4 1_555 D N6 DA 17 L DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 C N3 DC 5 K DC 5 1_555 D N1 DG 16 L DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 C N4 DC 5 K DC 5 1_555 D O6 DG 16 L DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 C O2 DC 5 K DC 5 1_555 D N2 DG 16 L DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 C N1 DA 6 K DA 6 1_555 D N3 DT 15 L DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 C N6 DA 6 K DA 6 1_555 D O4 DT 15 L DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 C N1 DA 7 K DA 7 1_555 D N3 DT 14 L DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 C N6 DA 7 K DA 7 1_555 D O4 DT 14 L DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 C N1 DA 8 K DA 8 1_555 D N3 DT 13 L DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 C N6 DA 8 K DA 8 1_555 D O4 DT 13 L DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 C N1 DG 9 K DG 9 1_555 D N3 DC 12 L DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 C N2 DG 9 K DG 9 1_555 D O2 DC 12 L DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 C O6 DG 9 K DG 9 1_555 D N4 DC 12 L DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 C N1 DA 10 K DA 10 1_555 D N3 DT 11 L DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 C N6 DA 10 K DA 10 1_555 D O4 DT 11 L DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 C N3 DT 11 K DT 11 1_555 D N1 DA 10 L DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 C O4 DT 11 K DT 11 1_555 D N6 DA 10 L DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 C N3 DC 12 K DC 12 1_555 D N1 DG 9 L DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 C N4 DC 12 K DC 12 1_555 D O6 DG 9 L DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 C O2 DC 12 K DC 12 1_555 D N2 DG 9 L DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 C N3 DT 13 K DT 13 1_555 D N1 DA 8 L DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 C O4 DT 13 K DT 13 1_555 D N6 DA 8 L DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 C N3 DT 14 K DT 14 1_555 D N1 DA 7 L DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 C O4 DT 14 K DT 14 1_555 D N6 DA 7 L DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 C N3 DT 15 K DT 15 1_555 D N1 DA 6 L DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 C O4 DT 15 K DT 15 1_555 D N6 DA 6 L DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 C N1 DG 16 K DG 16 1_555 D N3 DC 5 L DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 C N2 DG 16 K DG 16 1_555 D O2 DC 5 L DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 C O6 DG 16 K DG 16 1_555 D N4 DC 5 L DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 C N1 DA 17 K DA 17 1_555 D N3 DT 4 L DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 C N6 DA 17 K DA 17 1_555 D O4 DT 4 L DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 C N3 DT 18 K DT 18 1_555 D N1 DA 3 L DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog42 C O4 DT 18 K DT 18 1_555 D N6 DA 3 L DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog43 C N1 DG 19 K DG 19 1_555 D N3 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog44 C N2 DG 19 K DG 19 1_555 D O2 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog45 C O6 DG 19 K DG 19 1_555 D N4 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog46 C N1 DG 20 K DG 20 1_555 D N3 DC 1 L DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog47 C N2 DG 20 K DG 20 1_555 D O2 DC 1 L DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog48 C O6 DG 20 K DG 20 1_555 D N4 DC 1 L DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 232 n n 
C1 C2 EDO sing 233 n n 
C1 H11 EDO sing 234 n n 
C1 H12 EDO sing 235 n n 
O1 HO1 EDO sing 236 n n 
C2 O2 EDO sing 237 n n 
C2 H21 EDO sing 238 n n 
C2 H22 EDO sing 239 n n 
O2 HO2 EDO sing 240 n n 
#
_atom_sites.entry_id                     3RN2 
_atom_sites.fract_transf_matrix[1][1]    0.017077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.00008 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 1 1 EDO EDO . 
F 3 EDO A 1 3 3 EDO EDO . 
G 3 EDO B 1 2 2 EDO EDO . 
H 3 EDO B 1 5 5 EDO EDO . 
I 3 EDO B 1 6 6 EDO EDO . 
J 3 EDO L 1 21 4 EDO EDO . 
K 4 HOH A 1 10 10 HOH HOH . 
K 4 HOH A 2 20 20 HOH HOH . 
K 4 HOH A 3 22 22 HOH HOH . 
K 4 HOH A 4 23 23 HOH HOH . 
K 4 HOH A 5 25 25 HOH HOH . 
K 4 HOH A 6 29 29 HOH HOH . 
K 4 HOH A 7 35 35 HOH HOH . 
K 4 HOH A 8 41 41 HOH HOH . 
K 4 HOH A 9 348 1 HOH HOH . 
L 4 HOH B 1 3 3 HOH HOH . 
L 4 HOH B 2 7 7 HOH HOH . 
L 4 HOH B 3 8 8 HOH HOH . 
L 4 HOH B 4 11 11 HOH HOH . 
L 4 HOH B 5 12 12 HOH HOH . 
L 4 HOH B 6 14 14 HOH HOH . 
L 4 HOH B 7 15 15 HOH HOH . 
L 4 HOH B 8 16 16 HOH HOH . 
L 4 HOH B 9 17 17 HOH HOH . 
L 4 HOH B 10 19 19 HOH HOH . 
L 4 HOH B 11 21 21 HOH HOH . 
L 4 HOH B 12 24 24 HOH HOH . 
L 4 HOH B 13 27 27 HOH HOH . 
L 4 HOH B 14 28 28 HOH HOH . 
L 4 HOH B 15 30 30 HOH HOH . 
L 4 HOH B 16 33 33 HOH HOH . 
L 4 HOH B 17 40 40 HOH HOH . 
L 4 HOH B 18 348 2 HOH HOH . 
L 4 HOH B 19 349 5 HOH HOH . 
M 4 HOH K 1 21 4 HOH HOH . 
M 4 HOH K 2 22 9 HOH HOH . 
M 4 HOH K 3 23 18 HOH HOH . 
M 4 HOH K 4 26 26 HOH HOH . 
M 4 HOH K 5 34 34 HOH HOH . 
M 4 HOH K 6 36 36 HOH HOH . 
M 4 HOH K 7 37 37 HOH HOH . 
M 4 HOH K 8 38 38 HOH HOH . 
M 4 HOH K 9 39 39 HOH HOH . 
M 4 HOH K 10 43 43 HOH HOH . 
M 4 HOH K 11 45 45 HOH HOH . 
N 4 HOH L 1 22 6 HOH HOH . 
N 4 HOH L 2 23 13 HOH HOH . 
N 4 HOH L 3 31 31 HOH HOH . 
N 4 HOH L 4 32 32 HOH HOH . 
N 4 HOH L 5 42 42 HOH HOH . 
N 4 HOH L 6 44 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 -26.945 -12.922 -21.485 1 61.56 ? C1 EDO 3 A 1 
HETATM 2 O O1 EDO . . . F 3 -26.988 -12.802 -20.059 1 57.2 ? O1 EDO 3 A 1 
HETATM 3 C C2 EDO . . . F 3 -25.717 -13.728 -21.893 1 66.36 ? C2 EDO 3 A 1 
HETATM 4 O O2 EDO . . . F 3 -25.795 -15.039 -21.323 1 69.11 ? O2 EDO 3 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#