data_3RN6
#
_model_server_result.job_id            dW0HT8GGJl1szUKjhDaAcQ 
_model_server_result.datetime_utc      '2024-10-11 14:19:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":427}' 
#
_entry.id    3RN6 
#
_exptl.entry_id    3RN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              368.463 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RN6 
_cell.length_a            147.181 
_cell.length_b            147.181 
_cell.length_c            199.747 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 62 A HIS 61 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc2 A NE2 HIS 64 A HIS 63 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 A NE2 HIS 98 A HIS 97 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc4 A OE2 GLU 139 A GLU 138 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc5 A OE1 GLU 139 A GLU 138 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc6 A NE2 HIS 215 A HIS 214 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc7 C ZN ZN . A ZN 428 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
#
_chem_comp.formula           'C17 H36 O8' 
_chem_comp.formula_weight    368.463 
_chem_comp.id                PXN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAA PXN sing 294 n n 
CAA HAA PXN sing 295 n n 
CAA HAAA PXN sing 296 n n 
CAA HAAB PXN sing 297 n n 
CAI CAB PXN sing 298 n n 
CAB HAB PXN sing 299 n n 
CAB HABA PXN sing 300 n n 
CAB HABB PXN sing 301 n n 
CAM CAC PXN sing 302 n n 
OAD CAC PXN sing 303 n n 
CAC HAC PXN sing 304 n n 
CAC HACA PXN sing 305 n n 
OAD CAE PXN sing 306 n n 
CAE CAF PXN sing 307 n n 
CAE HAE PXN sing 308 n n 
CAE HAEA PXN sing 309 n n 
CAF OAG PXN sing 310 n n 
CAF HAF PXN sing 311 n n 
OAG HOAG PXN sing 312 n n 
OAH CAI PXN sing 313 n n 
OAH HOAH PXN sing 314 n n 
CAI CAJ PXN sing 315 n n 
CAI HAI PXN sing 316 n n 
CAJ OAK PXN sing 317 n n 
CAJ HAJ PXN sing 318 n n 
CAJ HAJA PXN sing 319 n n 
OAK CAL PXN sing 320 n n 
CAL CAM PXN sing 321 n n 
CAL HAL PXN sing 322 n n 
CAL HALA PXN sing 323 n n 
CAM CAW PXN sing 324 n n 
CAM CAN PXN sing 325 n n 
OAO CAN PXN sing 326 n n 
CAN HAN PXN sing 327 n n 
CAN HANA PXN sing 328 n n 
OAO CAP PXN sing 329 n n 
CAQ CAP PXN sing 330 n n 
CAP HAP PXN sing 331 n n 
CAP HAPA PXN sing 332 n n 
CAX CAQ PXN sing 333 n n 
CAQ OAR PXN sing 334 n n 
CAQ HAQ PXN sing 335 n n 
OAR HOAR PXN sing 336 n n 
OAS CAT PXN sing 337 n n 
OAS HOAS PXN sing 338 n n 
CAU CAT PXN sing 339 n n 
CAT CAY PXN sing 340 n n 
CAT HAT PXN sing 341 n n 
OAV CAU PXN sing 342 n n 
CAU HAU PXN sing 343 n n 
CAU HAUA PXN sing 344 n n 
OAV CAW PXN sing 345 n n 
CAW HAW PXN sing 346 n n 
CAW HAWA PXN sing 347 n n 
CAX HAX PXN sing 348 n n 
CAX HAXA PXN sing 349 n n 
CAX HAXB PXN sing 350 n n 
CAY HAY PXN sing 351 n n 
CAY HAYA PXN sing 352 n n 
CAY HAYB PXN sing 353 n n 
#
_atom_sites.entry_id                     3RN6 
_atom_sites.fract_transf_matrix[1][1]    0.006794 
_atom_sites.fract_transf_matrix[1][2]    0.003923 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005006 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PXN A 1 427 427 PXN PXN . 
C 3 ZN A 1 428 428 ZN ZN . 
D 3 ZN A 1 429 429 ZN ZN . 
E 4 IGA A 1 430 1 IGA IGA . 
F 5 HOH A 1 431 0 HOH HOH . 
F 5 HOH A 2 432 1 HOH HOH . 
F 5 HOH A 3 433 2 HOH HOH . 
F 5 HOH A 4 434 4 HOH HOH . 
F 5 HOH A 5 435 5 HOH HOH . 
F 5 HOH A 6 436 6 HOH HOH . 
F 5 HOH A 7 437 7 HOH HOH . 
F 5 HOH A 8 438 8 HOH HOH . 
F 5 HOH A 9 439 9 HOH HOH . 
F 5 HOH A 10 440 10 HOH HOH . 
F 5 HOH A 11 441 11 HOH HOH . 
F 5 HOH A 12 442 12 HOH HOH . 
F 5 HOH A 13 443 13 HOH HOH . 
F 5 HOH A 14 444 14 HOH HOH . 
F 5 HOH A 15 445 15 HOH HOH . 
F 5 HOH A 16 446 16 HOH HOH . 
F 5 HOH A 17 447 17 HOH HOH . 
F 5 HOH A 18 448 18 HOH HOH . 
F 5 HOH A 19 449 19 HOH HOH . 
F 5 HOH A 20 450 21 HOH HOH . 
F 5 HOH A 21 451 22 HOH HOH . 
F 5 HOH A 22 452 23 HOH HOH . 
F 5 HOH A 23 453 24 HOH HOH . 
F 5 HOH A 24 454 25 HOH HOH . 
F 5 HOH A 25 455 26 HOH HOH . 
F 5 HOH A 26 456 27 HOH HOH . 
F 5 HOH A 27 457 28 HOH HOH . 
F 5 HOH A 28 458 29 HOH HOH . 
F 5 HOH A 29 459 30 HOH HOH . 
F 5 HOH A 30 460 31 HOH HOH . 
F 5 HOH A 31 461 32 HOH HOH . 
F 5 HOH A 32 462 33 HOH HOH . 
F 5 HOH A 33 463 34 HOH HOH . 
F 5 HOH A 34 464 35 HOH HOH . 
F 5 HOH A 35 465 36 HOH HOH . 
F 5 HOH A 36 466 37 HOH HOH . 
F 5 HOH A 37 467 38 HOH HOH . 
F 5 HOH A 38 468 39 HOH HOH . 
F 5 HOH A 39 469 40 HOH HOH . 
F 5 HOH A 40 470 41 HOH HOH . 
F 5 HOH A 41 471 42 HOH HOH . 
F 5 HOH A 42 472 43 HOH HOH . 
F 5 HOH A 43 473 44 HOH HOH . 
F 5 HOH A 44 474 45 HOH HOH . 
F 5 HOH A 45 475 46 HOH HOH . 
F 5 HOH A 46 476 47 HOH HOH . 
F 5 HOH A 47 477 48 HOH HOH . 
F 5 HOH A 48 478 49 HOH HOH . 
F 5 HOH A 49 479 50 HOH HOH . 
F 5 HOH A 50 480 51 HOH HOH . 
F 5 HOH A 51 481 52 HOH HOH . 
F 5 HOH A 52 482 53 HOH HOH . 
F 5 HOH A 53 483 54 HOH HOH . 
F 5 HOH A 54 484 55 HOH HOH . 
F 5 HOH A 55 485 57 HOH HOH . 
F 5 HOH A 56 486 58 HOH HOH . 
F 5 HOH A 57 487 59 HOH HOH . 
F 5 HOH A 58 488 60 HOH HOH . 
F 5 HOH A 59 489 61 HOH HOH . 
F 5 HOH A 60 490 62 HOH HOH . 
F 5 HOH A 61 491 63 HOH HOH . 
F 5 HOH A 62 492 64 HOH HOH . 
F 5 HOH A 63 493 65 HOH HOH . 
F 5 HOH A 64 494 66 HOH HOH . 
F 5 HOH A 65 495 67 HOH HOH . 
F 5 HOH A 66 496 68 HOH HOH . 
F 5 HOH A 67 497 69 HOH HOH . 
F 5 HOH A 68 498 70 HOH HOH . 
F 5 HOH A 69 499 71 HOH HOH . 
F 5 HOH A 70 500 72 HOH HOH . 
F 5 HOH A 71 501 73 HOH HOH . 
F 5 HOH A 72 502 74 HOH HOH . 
F 5 HOH A 73 503 75 HOH HOH . 
F 5 HOH A 74 504 76 HOH HOH . 
F 5 HOH A 75 505 77 HOH HOH . 
F 5 HOH A 76 506 78 HOH HOH . 
F 5 HOH A 77 507 79 HOH HOH . 
F 5 HOH A 78 508 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA PXN . . . B 2 -62.862 -4.621 -6.852 1 72.27 ? CAA PXN 427 A 1 
HETATM 2 C CAB PXN . . . B 2 -56.088 -3.629 -5.311 1 62.73 ? CAB PXN 427 A 1 
HETATM 3 C CAC PXN . . . B 2 -60.589 -3.116 -9.668 1 59.17 ? CAC PXN 427 A 1 
HETATM 4 O OAD PXN . . . B 2 -61.859 -3.698 -9.702 1 62.42 ? OAD PXN 427 A 1 
HETATM 5 C CAE PXN . . . B 2 -62.864 -3.138 -8.913 1 67.04 ? CAE PXN 427 A 1 
HETATM 6 C CAF PXN . . . B 2 -63.635 -4.096 -8.055 1 74.46 ? CAF PXN 427 A 1 
HETATM 7 O OAG PXN . . . B 2 -64.931 -3.644 -7.852 1 63.97 ? OAG PXN 427 A 1 
HETATM 8 O OAH PXN . . . B 2 -57.91 -5.199 -4.94 1 73.69 ? OAH PXN 427 A 1 
HETATM 9 C CAI PXN . . . B 2 -57.521 -4.029 -5.565 1 66.24 ? CAI PXN 427 A 1 
HETATM 10 C CAJ PXN . . . B 2 -57.9 -3.97 -7.025 1 65.61 ? CAJ PXN 427 A 1 
HETATM 11 O OAK PXN . . . B 2 -59.193 -4.405 -7.379 1 70.62 ? OAK PXN 427 A 1 
HETATM 12 C CAL PXN . . . B 2 -59.36 -5.006 -8.646 1 65.92 ? CAL PXN 427 A 1 
HETATM 13 C CAM PXN . . . B 2 -59.437 -4.088 -9.856 1 61.06 ? CAM PXN 427 A 1 
HETATM 14 C CAN PXN . . . B 2 -58.145 -3.341 -10.064 1 57.35 ? CAN PXN 427 A 1 
HETATM 15 O OAO PXN . . . B 2 -57.278 -4.068 -10.863 1 56.27 ? OAO PXN 427 A 1 
HETATM 16 C CAP PXN . . . B 2 -55.949 -3.64 -10.921 1 61 ? CAP PXN 427 A 1 
HETATM 17 C CAQ PXN . . . B 2 -54.905 -4.599 -10.426 1 65.6 ? CAQ PXN 427 A 1 
HETATM 18 O OAR PXN . . . B 2 -53.894 -3.898 -9.811 1 61.29 ? OAR PXN 427 A 1 
HETATM 19 O OAS PXN . . . B 2 -60.073 -3.413 -15.71 1 63.42 ? OAS PXN 427 A 1 
HETATM 20 C CAT PXN . . . B 2 -60.761 -3.548 -14.506 1 69.95 ? CAT PXN 427 A 1 
HETATM 21 C CAU PXN . . . B 2 -59.883 -3.775 -13.282 1 69.73 ? CAU PXN 427 A 1 
HETATM 22 O OAV PXN . . . B 2 -60.466 -4.316 -12.113 1 69.99 ? OAV PXN 427 A 1 
HETATM 23 C CAW PXN . . . B 2 -59.643 -4.886 -11.126 1 63.03 ? CAW PXN 427 A 1 
HETATM 24 C CAX PXN . . . B 2 -54.481 -5.646 -11.45 1 64.39 ? CAX PXN 427 A 1 
HETATM 25 C CAY PXN . . . B 2 -61.858 -2.537 -14.302 1 53 ? CAY PXN 427 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#