data_3RN6
#
_model_server_result.job_id            9sT3-VeeZpXoBlFvgDY61g 
_model_server_result.datetime_utc      '2024-10-11 14:18:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":430}' 
#
_entry.id    3RN6 
#
_exptl.entry_id    3RN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              151.126 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-amino-3,7-dihydro-2H-purin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RN6 
_cell.length_a            147.181 
_cell.length_b            147.181 
_cell.length_c            199.747 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 62 A HIS 61 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc2 A NE2 HIS 64 A HIS 63 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 A NE2 HIS 98 A HIS 97 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc4 A OE2 GLU 139 A GLU 138 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc5 A OE1 GLU 139 A GLU 138 1_555 D ZN ZN . A ZN 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc6 A NE2 HIS 215 A HIS 214 1_555 C ZN ZN . A ZN 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc7 C ZN ZN . A ZN 428 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
#
_chem_comp.formula           'C5 H5 N5 O' 
_chem_comp.formula_weight    151.126 
_chem_comp.id                IGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-amino-3,7-dihydro-2H-purin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Isoguanine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N1 IGA doub 152 n n 
N1 C2 IGA sing 153 n n 
C2 N3 IGA sing 154 n n 
C2 O2 IGA doub 155 n n 
C4 N3 IGA sing 156 n n 
N3 HN3 IGA sing 157 n n 
C5 C4 IGA doub 158 n y 
C4 N9 IGA sing 159 n y 
C6 C5 IGA sing 160 n n 
N7 C5 IGA sing 161 n y 
N6 C6 IGA sing 162 n n 
N6 HN6 IGA sing 163 n n 
N6 HN6A IGA sing 164 n n 
N7 C8 IGA sing 165 n y 
C8 N9 IGA doub 166 n y 
C8 H8 IGA sing 167 n n 
N7 HN7 IGA sing 168 n n 
#
_atom_sites.entry_id                     3RN6 
_atom_sites.fract_transf_matrix[1][1]    0.006794 
_atom_sites.fract_transf_matrix[1][2]    0.003923 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005006 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PXN A 1 427 427 PXN PXN . 
C 3 ZN A 1 428 428 ZN ZN . 
D 3 ZN A 1 429 429 ZN ZN . 
E 4 IGA A 1 430 1 IGA IGA . 
F 5 HOH A 1 431 0 HOH HOH . 
F 5 HOH A 2 432 1 HOH HOH . 
F 5 HOH A 3 433 2 HOH HOH . 
F 5 HOH A 4 434 4 HOH HOH . 
F 5 HOH A 5 435 5 HOH HOH . 
F 5 HOH A 6 436 6 HOH HOH . 
F 5 HOH A 7 437 7 HOH HOH . 
F 5 HOH A 8 438 8 HOH HOH . 
F 5 HOH A 9 439 9 HOH HOH . 
F 5 HOH A 10 440 10 HOH HOH . 
F 5 HOH A 11 441 11 HOH HOH . 
F 5 HOH A 12 442 12 HOH HOH . 
F 5 HOH A 13 443 13 HOH HOH . 
F 5 HOH A 14 444 14 HOH HOH . 
F 5 HOH A 15 445 15 HOH HOH . 
F 5 HOH A 16 446 16 HOH HOH . 
F 5 HOH A 17 447 17 HOH HOH . 
F 5 HOH A 18 448 18 HOH HOH . 
F 5 HOH A 19 449 19 HOH HOH . 
F 5 HOH A 20 450 21 HOH HOH . 
F 5 HOH A 21 451 22 HOH HOH . 
F 5 HOH A 22 452 23 HOH HOH . 
F 5 HOH A 23 453 24 HOH HOH . 
F 5 HOH A 24 454 25 HOH HOH . 
F 5 HOH A 25 455 26 HOH HOH . 
F 5 HOH A 26 456 27 HOH HOH . 
F 5 HOH A 27 457 28 HOH HOH . 
F 5 HOH A 28 458 29 HOH HOH . 
F 5 HOH A 29 459 30 HOH HOH . 
F 5 HOH A 30 460 31 HOH HOH . 
F 5 HOH A 31 461 32 HOH HOH . 
F 5 HOH A 32 462 33 HOH HOH . 
F 5 HOH A 33 463 34 HOH HOH . 
F 5 HOH A 34 464 35 HOH HOH . 
F 5 HOH A 35 465 36 HOH HOH . 
F 5 HOH A 36 466 37 HOH HOH . 
F 5 HOH A 37 467 38 HOH HOH . 
F 5 HOH A 38 468 39 HOH HOH . 
F 5 HOH A 39 469 40 HOH HOH . 
F 5 HOH A 40 470 41 HOH HOH . 
F 5 HOH A 41 471 42 HOH HOH . 
F 5 HOH A 42 472 43 HOH HOH . 
F 5 HOH A 43 473 44 HOH HOH . 
F 5 HOH A 44 474 45 HOH HOH . 
F 5 HOH A 45 475 46 HOH HOH . 
F 5 HOH A 46 476 47 HOH HOH . 
F 5 HOH A 47 477 48 HOH HOH . 
F 5 HOH A 48 478 49 HOH HOH . 
F 5 HOH A 49 479 50 HOH HOH . 
F 5 HOH A 50 480 51 HOH HOH . 
F 5 HOH A 51 481 52 HOH HOH . 
F 5 HOH A 52 482 53 HOH HOH . 
F 5 HOH A 53 483 54 HOH HOH . 
F 5 HOH A 54 484 55 HOH HOH . 
F 5 HOH A 55 485 57 HOH HOH . 
F 5 HOH A 56 486 58 HOH HOH . 
F 5 HOH A 57 487 59 HOH HOH . 
F 5 HOH A 58 488 60 HOH HOH . 
F 5 HOH A 59 489 61 HOH HOH . 
F 5 HOH A 60 490 62 HOH HOH . 
F 5 HOH A 61 491 63 HOH HOH . 
F 5 HOH A 62 492 64 HOH HOH . 
F 5 HOH A 63 493 65 HOH HOH . 
F 5 HOH A 64 494 66 HOH HOH . 
F 5 HOH A 65 495 67 HOH HOH . 
F 5 HOH A 66 496 68 HOH HOH . 
F 5 HOH A 67 497 69 HOH HOH . 
F 5 HOH A 68 498 70 HOH HOH . 
F 5 HOH A 69 499 71 HOH HOH . 
F 5 HOH A 70 500 72 HOH HOH . 
F 5 HOH A 71 501 73 HOH HOH . 
F 5 HOH A 72 502 74 HOH HOH . 
F 5 HOH A 73 503 75 HOH HOH . 
F 5 HOH A 74 504 76 HOH HOH . 
F 5 HOH A 75 505 77 HOH HOH . 
F 5 HOH A 76 506 78 HOH HOH . 
F 5 HOH A 77 507 79 HOH HOH . 
F 5 HOH A 78 508 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IGA . . . E 4 -69.115 20.223 -16.565 0.74 48.14 ? N1 IGA 430 A 1 
HETATM 2 C C2 IGA . . . E 4 -69.736 19.962 -15.366 0.74 50.79 ? C2 IGA 430 A 1 
HETATM 3 O O2 IGA . . . E 4 -70.351 20.878 -14.754 0.74 44.32 ? O2 IGA 430 A 1 
HETATM 4 N N3 IGA . . . E 4 -69.727 18.736 -14.788 0.74 45.05 ? N3 IGA 430 A 1 
HETATM 5 C C4 IGA . . . E 4 -69.099 17.696 -15.37 0.74 51.25 ? C4 IGA 430 A 1 
HETATM 6 C C5 IGA . . . E 4 -68.406 17.901 -16.666 0.74 52.35 ? C5 IGA 430 A 1 
HETATM 7 C C6 IGA . . . E 4 -68.453 19.263 -17.26 0.74 50.52 ? C6 IGA 430 A 1 
HETATM 8 N N6 IGA . . . E 4 -67.877 19.478 -18.36 0.74 49.85 ? N6 IGA 430 A 1 
HETATM 9 N N7 IGA . . . E 4 -67.868 16.722 -17.016 0.74 45.45 ? N7 IGA 430 A 1 
HETATM 10 C C8 IGA . . . E 4 -68.179 15.824 -16.041 0.74 50.2 ? C8 IGA 430 A 1 
HETATM 11 N N9 IGA . . . E 4 -68.918 16.405 -15.055 0.74 50.67 ? N9 IGA 430 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#